RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-208ENST00000489247 NFKB1P19838 968 aa6.57□□□□□ -1.36
ATG4A-208ENST00000489247 MAPK1P28482 360 aa6.57□□□□□ -1.36
ATG4A-208ENST00000489247 EVCP57679 992 aa6.57□□□□□ -1.36
ATG4A-208ENST00000489247 EXOSC10Q01780 885 aaKnown RBP6.57□□□□□ -1.36
ATG4A-208ENST00000489247 ST3GAL1Q11201 340 aa6.57□□□□□ -1.36
ATG4A-208ENST00000489247 CCINQ13939 588 aa6.57□□□□□ -1.36
ATG4A-208ENST00000489247 UBE4AQ14139 1066 aa6.57□□□□□ -1.36
ATG4A-208ENST00000489247 TRIP4Q15650 581 aaPredicted RBP6.57□□□□□ -1.36
ATG4A-208ENST00000489247 ALX1Q15699 326 aa6.57□□□□□ -1.36
ATG4A-208ENST00000489247 GORABQ5T7V8 394 aa6.57□□□□□ -1.36
ATG4A-208ENST00000489247 TBC1D9BQ66K14 1250 aa6.57□□□□□ -1.36
ATG4A-208ENST00000489247 BLOC1S2Q6QNY1 142 aa6.57□□□□□ -1.36
ATG4A-208ENST00000489247 GPR152Q8TDT2 470 aa6.57□□□□□ -1.36
ATG4A-208ENST00000489247 SEC62Q99442 399 aaKnown RBP6.57□□□□□ -1.36
ATG4A-208ENST00000489247 MPHOSPH8Q99549 860 aa6.57□□□□□ -1.36
ATG4A-208ENST00000489247 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.57□□□□□ -1.36
ATG4A-208ENST00000489247 SEC31BQ9NQW1 1179 aa6.57□□□□□ -1.36
ATG4A-208ENST00000489247 ZFATQ9P243 1243 aa6.57□□□□□ -1.36
ATG4A-208ENST00000489247 CTNNA3Q9UI47 895 aa6.57□□□□□ -1.36
ATG4A-208ENST00000489247 ISY1Q9ULR0 285 aaKnown RBP6.57□□□□□ -1.36
ATG4A-208ENST00000489247 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.57□□□□□ -1.36
ATG4A-208ENST00000489247 MYH3P11055 1940 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 WDR33Q9C0J8 1336 aaKnown RBP6.56□□□□□ -1.36
ATG4A-208ENST00000489247 IRS2Q9Y4H2 1338 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 M0R2C6 588 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 CHGBP05060 677 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 EPB42P16452 691 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 TARSP26639 723 aaKnown RBP6.56□□□□□ -1.36
ATG4A-208ENST00000489247 TM4SF1P30408 202 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 DEKP35659 375 aaKnown RBP6.56□□□□□ -1.36
ATG4A-208ENST00000489247 PHKA1P46020 1223 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 EIF1AXP47813 144 aaKnown RBP6.56□□□□□ -1.36
ATG4A-208ENST00000489247 KCNJ4P48050 445 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 CHRNDQ07001 517 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 TOB2Q14106 344 aaPredicted RBP6.56□□□□□ -1.36
ATG4A-208ENST00000489247 TPTE2Q6XPS3 522 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 CCDC129Q6ZRS4 1044 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 STOX1Q6ZVD7 989 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 AMIGO3Q86WK7 504 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 ANKRD18AQ8IVF6 992 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 SPATA5Q8NB90 893 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 TMEM87AQ8NBN3 555 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 NEK1Q96PY6 1258 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 SETDB2Q96T68 719 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 MDFIQ99750 246 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 PIH1D3Q9NQM4 214 aaKnown RBP6.56□□□□□ -1.36
ATG4A-208ENST00000489247 AVENQ9NQS1 362 aaPredicted RBP6.56□□□□□ -1.36
ATG4A-208ENST00000489247 LRRC4BQ9NT99 713 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 DCTN4Q9UJW0 460 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 TPCN1Q9ULQ1 816 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 TAF6LQ9Y6J9 622 aa6.56□□□□□ -1.36
ATG4A-208ENST00000489247 PNPLA7Q6ZV29 1317 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 FSD2A1L4K1 749 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 KLRG2A4D1S0 409 aaPredicted RBP6.55□□□□□ -1.36
ATG4A-208ENST00000489247 ANKRD33BA6NCL7 494 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 GOLGA6L22H0YM25 854 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 GPAA1O43292 621 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 SIN3BO75182 1162 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 XYLBO75191 536 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 LARGE1O95461 756 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 PDE6AP16499 860 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 RBM6P78332 1123 aaKnown RBP6.55□□□□□ -1.36
ATG4A-208ENST00000489247 TBC1D8BQ0IIM8 1120 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 PKP1Q13835 747 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 RASGRF1Q13972 1273 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 ME3Q16798 604 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 KLHL40Q2TBA0 621 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 CRY2Q49AN0 593 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 TRAPPC3LQ5T215 181 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 ZNF772Q68DY9 489 aaPredicted RBP6.55□□□□□ -1.36
ATG4A-208ENST00000489247 C15orf52Q6ZUT6 534 aaKnown RBP6.55□□□□□ -1.36
ATG4A-208ENST00000489247 DHX32Q7L7V1 743 aaKnown RBP6.55□□□□□ -1.36
ATG4A-208ENST00000489247 KRT27Q7Z3Y8 459 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 FBXO33Q7Z6M2 555 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 CHMP4CQ96CF2 233 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 BTBD6Q96KE9 485 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 LLPHQ9BRT6 129 aaKnown RBP6.55□□□□□ -1.36
ATG4A-208ENST00000489247 ANKRD2Q9GZV1 360 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 IGFLR1Q9H665 355 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 SRP68Q9UHB9 627 aaKnown RBP6.55□□□□□ -1.36
ATG4A-208ENST00000489247 MINPP1Q9UNW1 487 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.55□□□□□ -1.36
ATG4A-208ENST00000489247 COL4A1P02462 1669 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 SBF2Q86WG5 1849 aa6.55□□□□□ -1.36
ATG4A-208ENST00000489247 SCO2A0A1W2PP80 73 aa6.54□□□□□ -1.36
ATG4A-208ENST00000489247 E7EWF7 191 aa6.54□□□□□ -1.36
ATG4A-208ENST00000489247 PLSCR1O15162 318 aa6.54□□□□□ -1.36
ATG4A-208ENST00000489247 PFKFB2O60825 505 aa6.54□□□□□ -1.36
ATG4A-208ENST00000489247 FGAP02671 866 aa6.54□□□□□ -1.36
ATG4A-208ENST00000489247 CPA1P15085 419 aa6.54□□□□□ -1.36
ATG4A-208ENST00000489247 HOXB4P17483 251 aaPredicted RBP6.54□□□□□ -1.36
ATG4A-208ENST00000489247 RPS8P62241 208 aaKnown RBP6.54□□□□□ -1.36
ATG4A-208ENST00000489247 SNRPNP63162 240 aaKnown RBP6.54□□□□□ -1.36
ATG4A-208ENST00000489247 MAP3K12Q12852 859 aa6.54□□□□□ -1.36
ATG4A-208ENST00000489247 COL9A3Q14050 684 aaPredicted RBP6.54□□□□□ -1.36
ATG4A-208ENST00000489247 NFIXQ14938 502 aa6.54□□□□□ -1.36
ATG4A-208ENST00000489247 SLC9C2Q5TAH2 1124 aa6.54□□□□□ -1.36
ATG4A-208ENST00000489247 PI16Q6UXB8 463 aa6.54□□□□□ -1.36
ATG4A-208ENST00000489247 NBPF5PQ86XG9 351 aaPredicted RBP6.54□□□□□ -1.36
ATG4A-208ENST00000489247 SMARCC2Q8TAQ2 1214 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms