RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 DEFB128Q7Z7B8 93 aa11.19□□□□□ -0.62
COL17A1-207ENST00000488320 ZNF467Q7Z7K2 595 aaPredicted RBP11.19□□□□□ -0.62
COL17A1-207ENST00000488320 CPXCR1Q8N123 301 aa11.19□□□□□ -0.62
COL17A1-207ENST00000488320 SDR42E1Q8WUS8 393 aa11.19□□□□□ -0.62
COL17A1-207ENST00000488320 CCDC17Q96LX7 622 aa11.19□□□□□ -0.62
COL17A1-207ENST00000488320 NOC4LQ9BVI4 516 aaKnown RBP11.19□□□□□ -0.62
COL17A1-207ENST00000488320 TEX13BQ9BXU2 312 aa11.19□□□□□ -0.62
COL17A1-207ENST00000488320 AP5M1Q9H0R1 490 aa11.19□□□□□ -0.62
COL17A1-207ENST00000488320 DBNLQ9UJU6 430 aaKnown RBP11.19□□□□□ -0.62
COL17A1-207ENST00000488320 MUC6Q6W4X9 2439 aa11.19□□□□□ -0.62
COL17A1-207ENST00000488320 CHD7Q9P2D1 2997 aa11.19□□□□□ -0.62
COL17A1-207ENST00000488320 MCM3APO60318 1980 aa11.18□□□□□ -0.62
COL17A1-207ENST00000488320 EPOPA6NHQ4 379 aa11.18□□□□□ -0.62
COL17A1-207ENST00000488320 B4GALT4O60513 344 aa11.18□□□□□ -0.62
COL17A1-207ENST00000488320 ZBED4O75132 1171 aa11.18□□□□□ -0.62
COL17A1-207ENST00000488320 SSTR3P32745 418 aaPredicted RBP11.18□□□□□ -0.62
COL17A1-207ENST00000488320 TTLL4Q14679 1199 aa11.18□□□□□ -0.62
COL17A1-207ENST00000488320 ARMCX2Q7L311 632 aa11.18□□□□□ -0.62
COL17A1-207ENST00000488320 AMOTL1Q8IY63 956 aa11.18□□□□□ -0.62
COL17A1-207ENST00000488320 SLC43A3Q8NBI5 491 aa11.18□□□□□ -0.62
COL17A1-207ENST00000488320 REPS2Q8NFH8 660 aa11.18□□□□□ -0.62
COL17A1-207ENST00000488320 SEZ6LQ9BYH1 1024 aa11.18□□□□□ -0.62
COL17A1-207ENST00000488320 WNT8AQ9H1J5 351 aa11.18□□□□□ -0.62
COL17A1-207ENST00000488320 KANSL2Q9H9L4 492 aa11.18□□□□□ -0.62
COL17A1-207ENST00000488320 CD320Q9NPF0 282 aa11.18□□□□□ -0.62
COL17A1-207ENST00000488320 DCP1AQ9NPI6 582 aaPredicted RBP11.18□□□□□ -0.62
COL17A1-207ENST00000488320 TLR7Q9NYK1 1049 aaKnown RBP11.18□□□□□ -0.62
COL17A1-207ENST00000488320 RIPK3Q9Y572 518 aa11.18□□□□□ -0.62
COL17A1-207ENST00000488320 DNAJC25-GNG10A0A024R161 153 aa11.17□□□□□ -0.62
COL17A1-207ENST00000488320 DYNC1LI2O43237 492 aaPredicted RBP11.17□□□□□ -0.62
COL17A1-207ENST00000488320 BCAR3O75815 825 aa11.17□□□□□ -0.62
COL17A1-207ENST00000488320 PFKMP08237 780 aa11.17□□□□□ -0.62
COL17A1-207ENST00000488320 CT47B1P0C2W7 299 aaPredicted RBP11.17□□□□□ -0.62
COL17A1-207ENST00000488320 ALADP13716 330 aa11.17□□□□□ -0.62
COL17A1-207ENST00000488320 CDK8P49336 464 aa11.17□□□□□ -0.62
COL17A1-207ENST00000488320 GRB10Q13322 594 aa11.17□□□□□ -0.62
COL17A1-207ENST00000488320 SLC9C2Q5TAH2 1124 aa11.17□□□□□ -0.62
COL17A1-207ENST00000488320 CCDC144CPQ8IYA2 1237 aa11.17□□□□□ -0.62
COL17A1-207ENST00000488320 GJD3Q8N144 294 aa11.17□□□□□ -0.62
COL17A1-207ENST00000488320 ARHGAP45Q92619 1136 aa11.17□□□□□ -0.62
COL17A1-207ENST00000488320 SLF1Q9BQI6 1058 aa11.17□□□□□ -0.62
COL17A1-207ENST00000488320 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.16□□□□□ -0.62
COL17A1-207ENST00000488320 CTAGE5O15320 804 aa11.16□□□□□ -0.62
COL17A1-207ENST00000488320 IPO8O15397 1037 aaKnown RBP11.16□□□□□ -0.62
COL17A1-207ENST00000488320 PSMC6P62333 389 aa11.16□□□□□ -0.62
COL17A1-207ENST00000488320 NHLH1Q02575 133 aa11.16□□□□□ -0.62
COL17A1-207ENST00000488320 TAP1Q03518 808 aa11.16□□□□□ -0.62
COL17A1-207ENST00000488320 TTF1Q15361 905 aaPredicted RBP11.16□□□□□ -0.62
COL17A1-207ENST00000488320 FSCN1Q16658 493 aaKnown RBP11.16□□□□□ -0.62
COL17A1-207ENST00000488320 TLK2Q86UE8 772 aa11.16□□□□□ -0.62
COL17A1-207ENST00000488320 PRPF38AQ8NAV1 312 aaKnown RBP11.16□□□□□ -0.62
COL17A1-207ENST00000488320 PHOSPHO2Q8TCD6 241 aa11.16□□□□□ -0.62
COL17A1-207ENST00000488320 EAF2Q96CJ1 260 aaPredicted RBP11.16□□□□□ -0.62
COL17A1-207ENST00000488320 AGBL1Q96MI9 1066 aa11.16□□□□□ -0.62
COL17A1-207ENST00000488320 SLC9A7Q96T83 725 aa11.16□□□□□ -0.62
COL17A1-207ENST00000488320 FTOQ9C0B1 505 aaKnown RBP eCLIP11.16□□□□□ -0.62
COL17A1-207ENST00000488320 RAVER2Q9HCJ3 691 aaKnown RBP11.16□□□□□ -0.62
COL17A1-207ENST00000488320 FBXO40Q9UH90 709 aa11.16□□□□□ -0.62
COL17A1-207ENST00000488320 PIEZO1Q92508 2521 aa11.15□□□□□ -0.62
COL17A1-207ENST00000488320 GRIN2DO15399 1336 aa11.15□□□□□ -0.62
COL17A1-207ENST00000488320 ZNF532Q9HCE3 1301 aa11.15□□□□□ -0.62
COL17A1-207ENST00000488320 SUPT20HL2P0C7V6 817 aa11.15□□□□□ -0.62
COL17A1-207ENST00000488320 CYP2C9P11712 490 aa11.15□□□□□ -0.62
COL17A1-207ENST00000488320 PDE6AP16499 860 aa11.15□□□□□ -0.62
COL17A1-207ENST00000488320 ATP8B2P98198 1209 aa11.15□□□□□ -0.62
COL17A1-207ENST00000488320 POLA2Q14181 598 aa11.15□□□□□ -0.62
COL17A1-207ENST00000488320 LCORLQ8N3X6 602 aa11.15□□□□□ -0.62
COL17A1-207ENST00000488320 KIFC2Q96AC6 838 aa11.15□□□□□ -0.62
COL17A1-207ENST00000488320 NUP88Q99567 741 aaPredicted RBP11.15□□□□□ -0.62
COL17A1-207ENST00000488320 ARMT1Q9H993 441 aa11.15□□□□□ -0.62
COL17A1-207ENST00000488320 ASTN1O14525 1302 aa11.14□□□□□ -0.63
COL17A1-207ENST00000488320 CYP2D7A0A087X1C5 515 aa11.14□□□□□ -0.63
COL17A1-207ENST00000488320 RARSP54136 660 aaKnown RBP11.14□□□□□ -0.63
COL17A1-207ENST00000488320 NKX3-2P78367 333 aa11.14□□□□□ -0.63
COL17A1-207ENST00000488320 CNTN2Q02246 1040 aa11.14□□□□□ -0.63
COL17A1-207ENST00000488320 HERC6Q8IVU3 1022 aa11.14□□□□□ -0.63
COL17A1-207ENST00000488320 FAM178BQ8IXR5 827 aa11.14□□□□□ -0.63
COL17A1-207ENST00000488320 RETREG2Q8NC44 543 aa11.14□□□□□ -0.63
COL17A1-207ENST00000488320 CHST13Q8NET6 341 aa11.14□□□□□ -0.63
COL17A1-207ENST00000488320 SSH3Q8TE77 659 aa11.14□□□□□ -0.63
COL17A1-207ENST00000488320 FRAT1Q92837 279 aaPredicted RBP11.14□□□□□ -0.63
COL17A1-207ENST00000488320 CLUAP1Q96AJ1 413 aa11.14□□□□□ -0.63
COL17A1-207ENST00000488320 DDRGK1Q96HY6 314 aa11.14□□□□□ -0.63
COL17A1-207ENST00000488320 FBXL18Q96ME1 805 aa11.14□□□□□ -0.63
COL17A1-207ENST00000488320 ZBED2Q9BTP6 218 aa11.14□□□□□ -0.63
COL17A1-207ENST00000488320 ALDH8A1Q9H2A2 487 aaPredicted RBP11.14□□□□□ -0.63
COL17A1-207ENST00000488320 HOMER2Q9NSB8 354 aa11.14□□□□□ -0.63
COL17A1-207ENST00000488320 ATP8A2Q9NTI2 1148 aa11.14□□□□□ -0.63
COL17A1-207ENST00000488320 LMCD1Q9NZU5 365 aa11.14□□□□□ -0.63
COL17A1-207ENST00000488320 SCN5AQ14524 2016 aa11.14□□□□□ -0.63
COL17A1-207ENST00000488320 ASB14A6NK59 587 aa11.13□□□□□ -0.63
COL17A1-207ENST00000488320 F5H6K3 240 aa11.13□□□□□ -0.63
COL17A1-207ENST00000488320 ATP2A1O14983 1001 aa11.13□□□□□ -0.63
COL17A1-207ENST00000488320 PRKAB2O43741 272 aa11.13□□□□□ -0.63
COL17A1-207ENST00000488320 ARHGEF15O94989 841 aa11.13□□□□□ -0.63
COL17A1-207ENST00000488320 RFC2P35250 354 aa11.13□□□□□ -0.63
COL17A1-207ENST00000488320 KCNJ6P48051 423 aa11.13□□□□□ -0.63
COL17A1-207ENST00000488320 KLRC3Q07444 240 aa11.13□□□□□ -0.63
COL17A1-207ENST00000488320 FAM47CQ5HY64 1035 aa11.13□□□□□ -0.63
COL17A1-207ENST00000488320 C12orf60Q5U649 245 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms