RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 PPM1EQ8WY54 764 aa18.43■□□□□ 0.54
MCF2L-228ENST00000487354 VWCEQ96DN2 955 aa18.43■□□□□ 0.54
MCF2L-228ENST00000487354 DDX11Q96FC9 970 aa18.43■□□□□ 0.54
MCF2L-228ENST00000487354 ASB2Q96Q27 587 aa18.43■□□□□ 0.54
MCF2L-228ENST00000487354 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.43■□□□□ 0.54
MCF2L-228ENST00000487354 RAVER2Q9HCJ3 691 aaKnown RBP18.43■□□□□ 0.54
MCF2L-228ENST00000487354 THEGQ9P2T0 379 aa18.43■□□□□ 0.54
MCF2L-228ENST00000487354 ARPP21Q9UBL0 812 aaPredicted RBP18.43■□□□□ 0.54
MCF2L-228ENST00000487354 YBX2Q9Y2T7 364 aaKnown RBP18.43■□□□□ 0.54
MCF2L-228ENST00000487354 SCN5AQ14524 2016 aa18.43■□□□□ 0.54
MCF2L-228ENST00000487354 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.42■□□□□ 0.54
MCF2L-228ENST00000487354 CYP2C18P33260 490 aa18.42■□□□□ 0.54
MCF2L-228ENST00000487354 SBK1Q52WX2 424 aa18.42■□□□□ 0.54
MCF2L-228ENST00000487354 PSRC1Q6PGN9 363 aaPredicted RBP18.42■□□□□ 0.54
MCF2L-228ENST00000487354 AMOTL1Q8IY63 956 aa18.42■□□□□ 0.54
MCF2L-228ENST00000487354 CPXCR1Q8N123 301 aa18.42■□□□□ 0.54
MCF2L-228ENST00000487354 PRPF38AQ8NAV1 312 aaKnown RBP18.42■□□□□ 0.54
MCF2L-228ENST00000487354 HERVK_113Q902F9 699 aa18.42■□□□□ 0.54
MCF2L-228ENST00000487354 STRBPQ96SI9 672 aaKnown RBP18.42■□□□□ 0.54
MCF2L-228ENST00000487354 GAS2L1Q99501 681 aaPredicted RBP18.42■□□□□ 0.54
MCF2L-228ENST00000487354 ABHD16BQ9H3Z7 469 aa18.42■□□□□ 0.54
MCF2L-228ENST00000487354 EPB41L4AQ9HCS5 686 aaPredicted RBP18.42■□□□□ 0.54
MCF2L-228ENST00000487354 GRIN2DO15399 1336 aa18.42■□□□□ 0.54
MCF2L-228ENST00000487354 GSG1L2A8MUP6 293 aa18.41■□□□□ 0.54
MCF2L-228ENST00000487354 BEX3Q00994 111 aa18.41■□□□□ 0.54
MCF2L-228ENST00000487354 CCDC129Q6ZRS4 1044 aa18.41■□□□□ 0.54
MCF2L-228ENST00000487354 RPAP2Q8IXW5 612 aaPredicted RBP18.41■□□□□ 0.54
MCF2L-228ENST00000487354 CCDC144CPQ8IYA2 1237 aa18.41■□□□□ 0.54
MCF2L-228ENST00000487354 TMEM199Q8N511 208 aa18.41■□□□□ 0.54
MCF2L-228ENST00000487354 ADAMTS19Q8TE59 1207 aa18.41■□□□□ 0.54
MCF2L-228ENST00000487354 NKX2-4Q9H2Z4 354 aa18.41■□□□□ 0.54
MCF2L-228ENST00000487354 IL23AQ9NPF7 189 aa18.41■□□□□ 0.54
MCF2L-228ENST00000487354 ZBTB40Q9NUA8 1239 aa18.41■□□□□ 0.54
MCF2L-228ENST00000487354 RAB11FIP3O75154 756 aa18.4■□□□□ 0.54
MCF2L-228ENST00000487354 CNTN2Q02246 1040 aa18.4■□□□□ 0.54
MCF2L-228ENST00000487354 GNASQ5JWF2 1037 aa18.4■□□□□ 0.54
MCF2L-228ENST00000487354 STK11IPQ8N1F8 1099 aa18.4■□□□□ 0.54
MCF2L-228ENST00000487354 FAM133AQ8N9E0 248 aa18.4■□□□□ 0.54
MCF2L-228ENST00000487354 BCL11AQ9H165 835 aa18.4■□□□□ 0.54
MCF2L-228ENST00000487354 GNEQ9Y223 722 aaKnown RBP18.4■□□□□ 0.54
MCF2L-228ENST00000487354 DDX49Q9Y6V7 483 aaKnown RBP18.4■□□□□ 0.54
MCF2L-228ENST00000487354 TANC1Q9C0D5 1861 aa18.39■□□□□ 0.54
MCF2L-228ENST00000487354 PTPRSQ13332 1948 aa18.39■□□□□ 0.53
MCF2L-228ENST00000487354 SLC4A3P48751 1232 aa18.39■□□□□ 0.53
MCF2L-228ENST00000487354 CCDC174Q6PII3 467 aa18.39■□□□□ 0.53
MCF2L-228ENST00000487354 MKL1Q969V6 931 aa18.39■□□□□ 0.53
MCF2L-228ENST00000487354 KIFC2Q96AC6 838 aa18.39■□□□□ 0.53
MCF2L-228ENST00000487354 WNT8AQ9H1J5 351 aa18.39■□□□□ 0.53
MCF2L-228ENST00000487354 ZNF536O15090 1300 aa18.39■□□□□ 0.53
MCF2L-228ENST00000487354 PLIN4Q96Q06 1357 aa18.39■□□□□ 0.53
MCF2L-228ENST00000487354 SOWAHBA6NEL2 793 aa18.38■□□□□ 0.53
MCF2L-228ENST00000487354 ZBED4O75132 1171 aa18.38■□□□□ 0.53
MCF2L-228ENST00000487354 OAZ1P54368 228 aa18.38■□□□□ 0.53
MCF2L-228ENST00000487354 RAB30Q15771 203 aa18.38■□□□□ 0.53
MCF2L-228ENST00000487354 CCDC85BQ15834 202 aaPredicted RBP18.38■□□□□ 0.53
MCF2L-228ENST00000487354 CXCL17Q6UXB2 119 aa18.38■□□□□ 0.53
MCF2L-228ENST00000487354 LRRC47Q8N1G4 583 aaKnown RBP18.38■□□□□ 0.53
MCF2L-228ENST00000487354 ANKRD35Q8N283 1001 aa18.38■□□□□ 0.53
MCF2L-228ENST00000487354 CHST13Q8NET6 341 aa18.38■□□□□ 0.53
MCF2L-228ENST00000487354 CEP95Q96GE4 821 aa18.38■□□□□ 0.53
MCF2L-228ENST00000487354 DDRGK1Q96HY6 314 aa18.38■□□□□ 0.53
MCF2L-228ENST00000487354 CLIP2Q9UDT6 1046 aa18.38■□□□□ 0.53
MCF2L-228ENST00000487354 PRRC2BQ5JSZ5 2229 aaKnown RBP18.38■□□□□ 0.53
MCF2L-228ENST00000487354 TMEM63BQ5T3F8 832 aa18.37■□□□□ 0.53
MCF2L-228ENST00000487354 GIMAP6Q6P9H5 292 aa18.37■□□□□ 0.53
MCF2L-228ENST00000487354 GMCL1P1Q8NEA9 526 aa18.37■□□□□ 0.53
MCF2L-228ENST00000487354 OSBP2Q969R2 916 aa18.37■□□□□ 0.53
MCF2L-228ENST00000487354 VTI1AQ96AJ9 217 aa18.37■□□□□ 0.53
MCF2L-228ENST00000487354 NOC4LQ9BVI4 516 aaKnown RBP18.37■□□□□ 0.53
MCF2L-228ENST00000487354 SPC25Q9HBM1 224 aa18.37■□□□□ 0.53
MCF2L-228ENST00000487354 A1CFQ9NQ94 594 aaKnown RBP18.37■□□□□ 0.53
MCF2L-228ENST00000487354 MTMR4Q9NYA4 1195 aa18.37■□□□□ 0.53
MCF2L-228ENST00000487354 FBXO40Q9UH90 709 aa18.37■□□□□ 0.53
MCF2L-228ENST00000487354 TLR3O15455 904 aaKnown RBP18.36■□□□□ 0.53
MCF2L-228ENST00000487354 HMMRO75330 724 aa18.36■□□□□ 0.53
MCF2L-228ENST00000487354 PRDM1O75626 825 aa18.36■□□□□ 0.53
MCF2L-228ENST00000487354 COL4A4P53420 1690 aaPredicted RBP18.36■□□□□ 0.53
MCF2L-228ENST00000487354 MRPS5P82675 430 aaKnown RBP18.36■□□□□ 0.53
MCF2L-228ENST00000487354 HNRNPUQ00839 825 aaKnown RBP eCLIP18.36■□□□□ 0.53
MCF2L-228ENST00000487354 NECAB3Q96P71 396 aaPredicted RBP18.36■□□□□ 0.53
MCF2L-228ENST00000487354 UHRF1Q96T88 793 aaPredicted RBP18.36■□□□□ 0.53
MCF2L-228ENST00000487354 HIPK3Q9H422 1215 aa18.36■□□□□ 0.53
MCF2L-228ENST00000487354 HOMER2Q9NSB8 354 aa18.36■□□□□ 0.53
MCF2L-228ENST00000487354 MSRAQ9UJ68 235 aa18.36■□□□□ 0.53
MCF2L-228ENST00000487354 FEM1BQ9UK73 627 aa18.36■□□□□ 0.53
MCF2L-228ENST00000487354 SYNPO2Q9UMS6 1093 aa18.36■□□□□ 0.53
MCF2L-228ENST00000487354 SCN10AQ9Y5Y9 1956 aa18.36■□□□□ 0.53
MCF2L-228ENST00000487354 MINDY4BA8MYZ0 360 aa18.35■□□□□ 0.53
MCF2L-228ENST00000487354 SMARCA5O60264 1052 aaPredicted RBP18.35■□□□□ 0.53
MCF2L-228ENST00000487354 B4GALT4O60513 344 aa18.35■□□□□ 0.53
MCF2L-228ENST00000487354 MYOGP15173 224 aa18.35■□□□□ 0.53
MCF2L-228ENST00000487354 SMPD1P17405 629 aa18.35■□□□□ 0.53
MCF2L-228ENST00000487354 IGFBP4P22692 258 aa18.35■□□□□ 0.53
MCF2L-228ENST00000487354 RABGGTBP53611 331 aa18.35■□□□□ 0.53
MCF2L-228ENST00000487354 TNFAIP2Q03169 654 aa18.35■□□□□ 0.53
MCF2L-228ENST00000487354 ZSCAN25Q6NSZ9 544 aa18.35■□□□□ 0.53
MCF2L-228ENST00000487354 OTOP2Q7RTS6 562 aa18.35■□□□□ 0.53
MCF2L-228ENST00000487354 TLK2Q86UE8 772 aa18.35■□□□□ 0.53
MCF2L-228ENST00000487354 TRPV6Q9H1D0 765 aa18.35■□□□□ 0.53
MCF2L-228ENST00000487354 MKNK2Q9HBH9 465 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 145.1 ms