RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 ZHX1Q9UKY1 873 aaPredicted RBP29.05■■■□□ 2.24
LIME1-206ENST00000487026 ZNF536O15090 1300 aa29.04■■■□□ 2.24
LIME1-206ENST00000487026 HAND2P61296 217 aa29.04■■■□□ 2.24
LIME1-206ENST00000487026 LRIT3Q3SXY7 679 aa29.04■■■□□ 2.24
LIME1-206ENST00000487026 DHX30Q7L2E3 1194 aaKnown RBP eCLIP29.04■■■□□ 2.24
LIME1-206ENST00000487026 RNF180Q86T96 592 aa29.04■■■□□ 2.24
LIME1-206ENST00000487026 PLEKHM2Q8IWE5 1019 aa29.04■■■□□ 2.24
LIME1-206ENST00000487026 FGD4Q96M96 766 aa29.04■■■□□ 2.24
LIME1-206ENST00000487026 PRDM5Q9NQX1 630 aaPredicted RBP29.04■■■□□ 2.24
LIME1-206ENST00000487026 PHF24Q9UPV7 400 aa29.04■■■□□ 2.24
LIME1-206ENST00000487026 FDX1P10109 184 aa29.03■■■□□ 2.24
LIME1-206ENST00000487026 CNTN2Q02246 1040 aa29.03■■■□□ 2.24
LIME1-206ENST00000487026 CCDC174Q6PII3 467 aa29.03■■■□□ 2.24
LIME1-206ENST00000487026 FAM184BQ9ULE4 1060 aa29.03■■■□□ 2.24
LIME1-206ENST00000487026 NUCB1Q02818 461 aa29.02■■■□□ 2.24
LIME1-206ENST00000487026 SNX17Q15036 470 aa29.02■■■□□ 2.24
LIME1-206ENST00000487026 ZNF467Q7Z7K2 595 aaPredicted RBP29.02■■■□□ 2.24
LIME1-206ENST00000487026 TICAM2Q86XR7 235 aa29.02■■■□□ 2.24
LIME1-206ENST00000487026 RNF146Q9NTX7 359 aa29.02■■■□□ 2.24
LIME1-206ENST00000487026 CDKN2AIPQ9NXV6 580 aaPredicted RBP29.02■■■□□ 2.24
LIME1-206ENST00000487026 PRR12Q9ULL5 1215 aa29.02■■■□□ 2.24
LIME1-206ENST00000487026 CCDC171Q6TFL3 1326 aa29.01■■■□□ 2.23
LIME1-206ENST00000487026 PLA2G6O60733 806 aa29.01■■■□□ 2.23
LIME1-206ENST00000487026 ADAMTS4O75173 837 aa29.01■■■□□ 2.23
LIME1-206ENST00000487026 SDSP20132 328 aa29.01■■■□□ 2.23
LIME1-206ENST00000487026 NOVP48745 357 aa29.01■■■□□ 2.23
LIME1-206ENST00000487026 ACVR2BQ13705 512 aa29.01■■■□□ 2.23
LIME1-206ENST00000487026 SH3RF1Q7Z6J0 888 aa29.01■■■□□ 2.23
LIME1-206ENST00000487026 TRERF1Q96PN7 1200 aa29.01■■■□□ 2.23
LIME1-206ENST00000487026 ACAD9Q9H845 621 aa29.01■■■□□ 2.23
LIME1-206ENST00000487026 ALAS1P13196 640 aa29■■■□□ 2.23
LIME1-206ENST00000487026 TLE2Q04725 743 aa29■■■□□ 2.23
LIME1-206ENST00000487026 CCDC96Q2M329 555 aa29■■■□□ 2.23
LIME1-206ENST00000487026 SYNRGQ9UMZ2 1314 aa28.99■■■□□ 2.23
LIME1-206ENST00000487026 A0A1W2PQ45 241 aaPredicted RBP28.99■■■□□ 2.23
LIME1-206ENST00000487026 A0A1W2PQY0 241 aa28.99■■■□□ 2.23
LIME1-206ENST00000487026 POTEB2H3BUK9 544 aa28.99■■■□□ 2.23
LIME1-206ENST00000487026 IRX5P78411 483 aaPredicted RBP28.99■■■□□ 2.23
LIME1-206ENST00000487026 TTBK2Q6IQ55 1244 aa28.99■■■□□ 2.23
LIME1-206ENST00000487026 ARMCX2Q7L311 632 aa28.99■■■□□ 2.23
LIME1-206ENST00000487026 CCDC144CPQ8IYA2 1237 aa28.99■■■□□ 2.23
LIME1-206ENST00000487026 TMEM47Q9BQJ4 181 aa28.99■■■□□ 2.23
LIME1-206ENST00000487026 A1CFQ9NQ94 594 aaKnown RBP28.99■■■□□ 2.23
LIME1-206ENST00000487026 PDLIM7Q9NR12 457 aa28.99■■■□□ 2.23
LIME1-206ENST00000487026 TRIM43BA6NCK2 446 aa28.98■■■□□ 2.23
LIME1-206ENST00000487026 ADCY6O43306 1168 aa28.98■■■□□ 2.23
LIME1-206ENST00000487026 SLC16A2P36021 539 aa28.98■■■□□ 2.23
LIME1-206ENST00000487026 CCDC144BQ3MJ40 725 aa28.98■■■□□ 2.23
LIME1-206ENST00000487026 C1orf53Q5VUE5 145 aa28.98■■■□□ 2.23
LIME1-206ENST00000487026 Q7L0L9 218 aa28.98■■■□□ 2.23
LIME1-206ENST00000487026 DCAF4Q8WV16 495 aa28.98■■■□□ 2.23
LIME1-206ENST00000487026 TRIM43Q96BQ3 446 aaPredicted RBP28.98■■■□□ 2.23
LIME1-206ENST00000487026 ABHD16BQ9H3Z7 469 aa28.98■■■□□ 2.23
LIME1-206ENST00000487026 OSBPL3Q9H4L5 887 aa28.98■■■□□ 2.23
LIME1-206ENST00000487026 MYADML2A6NDP7 307 aa28.97■■■□□ 2.23
LIME1-206ENST00000487026 MUM1L1Q5H9M0 696 aa28.97■■■□□ 2.23
LIME1-206ENST00000487026 FAM133AQ8N9E0 248 aa28.97■■■□□ 2.23
LIME1-206ENST00000487026 KLHDC9Q8NEP7 349 aa28.97■■■□□ 2.23
LIME1-206ENST00000487026 BADQ92934 168 aa28.97■■■□□ 2.23
LIME1-206ENST00000487026 MCM3APO60318 1980 aa28.97■■■□□ 2.23
LIME1-206ENST00000487026 ZMYM6O95789 1325 aa28.96■■■□□ 2.23
LIME1-206ENST00000487026 SOWAHBA6NEL2 793 aa28.96■■■□□ 2.23
LIME1-206ENST00000487026 DUSP11O75319 330 aaKnown RBP28.96■■■□□ 2.23
LIME1-206ENST00000487026 TOP1P11387 765 aaKnown RBP28.96■■■□□ 2.23
LIME1-206ENST00000487026 ACLYP53396 1101 aa28.96■■■□□ 2.23
LIME1-206ENST00000487026 KCNA10Q16322 511 aa28.96■■■□□ 2.23
LIME1-206ENST00000487026 TKFCQ3LXA3 575 aa28.96■■■□□ 2.23
LIME1-206ENST00000487026 AKNAD1Q5T1N1 836 aa28.96■■■□□ 2.23
LIME1-206ENST00000487026 MFSD6Q6ZSS7 791 aa28.96■■■□□ 2.23
LIME1-206ENST00000487026 TBC1D10CQ8IV04 446 aa28.96■■■□□ 2.23
LIME1-206ENST00000487026 DEFB123Q8N688 67 aa28.96■■■□□ 2.23
LIME1-206ENST00000487026 GPCPD1Q9NPB8 672 aa28.96■■■□□ 2.23
LIME1-206ENST00000487026 TCP11L1Q9NUJ3 509 aa28.96■■■□□ 2.23
LIME1-206ENST00000487026 DDX49Q9Y6V7 483 aaKnown RBP28.96■■■□□ 2.23
LIME1-206ENST00000487026 FRMPD2Q68DX3 1309 aaPredicted RBP28.95■■■□□ 2.23
LIME1-206ENST00000487026 GPR153Q6NV75 609 aa28.95■■■□□ 2.22
LIME1-206ENST00000487026 CWC27Q6UX04 472 aaKnown RBP28.95■■■□□ 2.22
LIME1-206ENST00000487026 TSEN34Q9BSV6 310 aaKnown RBP28.95■■■□□ 2.22
LIME1-206ENST00000487026 KATNBL1Q9H079 304 aa28.95■■■□□ 2.22
LIME1-206ENST00000487026 CCPG1Q9ULG6 757 aa28.95■■■□□ 2.22
LIME1-206ENST00000487026 PQBP1O60828 265 aaKnown RBP28.94■■■□□ 2.22
LIME1-206ENST00000487026 C6orf222P0C671 652 aaPredicted RBP28.94■■■□□ 2.22
LIME1-206ENST00000487026 CCSAPQ6IQ19 270 aaPredicted RBP28.94■■■□□ 2.22
LIME1-206ENST00000487026 LTBP2Q14767 1821 aa28.93■■■□□ 2.22
LIME1-206ENST00000487026 MFAP1P55081 439 aaKnown RBP28.93■■■□□ 2.22
LIME1-206ENST00000487026 STARD7Q9NQZ5 370 aa28.93■■■□□ 2.22
LIME1-206ENST00000487026 SUPT16HQ9Y5B9 1047 aaKnown RBP28.93■■■□□ 2.22
LIME1-206ENST00000487026 ITGB8P26012 769 aa28.92■■■□□ 2.22
LIME1-206ENST00000487026 SHHQ15465 462 aa28.92■■■□□ 2.22
LIME1-206ENST00000487026 SYDE2Q5VT97 1194 aa28.92■■■□□ 2.22
LIME1-206ENST00000487026 BTNL9Q6UXG8 535 aa28.92■■■□□ 2.22
LIME1-206ENST00000487026 NSMFQ6X4W1 530 aa28.92■■■□□ 2.22
LIME1-206ENST00000487026 PURBQ96QR8 312 aaKnown RBP28.92■■■□□ 2.22
LIME1-206ENST00000487026 ZKSCAN3Q9BRR0 538 aa28.92■■■□□ 2.22
LIME1-206ENST00000487026 RANBP17Q9H2T7 1088 aaKnown RBP28.92■■■□□ 2.22
LIME1-206ENST00000487026 DIAPH3Q9NSV4 1193 aa28.92■■■□□ 2.22
LIME1-206ENST00000487026 CYP39A1Q9NYL5 469 aa28.92■■■□□ 2.22
LIME1-206ENST00000487026 ASTN1O14525 1302 aa28.92■■■□□ 2.22
LIME1-206ENST00000487026 C11orf97A0A1B0GVM6 126 aaPredicted RBP28.91■■■□□ 2.22
LIME1-206ENST00000487026 ICAM1P05362 532 aa28.91■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms