RNA–Protein interactions for RNA: ENST00000484112.5

CPSF4-213, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-213ENST00000484112 REPS2Q8NFH8 660 aa11.84□□□□□ -0.51
CPSF4-213ENST00000484112 RUFY2Q8WXA3 655 aa11.84□□□□□ -0.51
CPSF4-213ENST00000484112 TIFAQ96CG3 184 aa11.84□□□□□ -0.51
CPSF4-213ENST00000484112 GLT1D1Q96MS3 346 aa11.84□□□□□ -0.51
CPSF4-213ENST00000484112 TOX2Q96NM4 488 aa11.84□□□□□ -0.51
CPSF4-213ENST00000484112 SLF1Q9BQI6 1058 aa11.84□□□□□ -0.51
CPSF4-213ENST00000484112 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.84□□□□□ -0.512e-8■■■□□ 14.8
CPSF4-213ENST00000484112 TSEN34Q9BSV6 310 aaKnown RBP11.84□□□□□ -0.51
CPSF4-213ENST00000484112 ZNF576Q9H609 170 aa11.84□□□□□ -0.51
CPSF4-213ENST00000484112 EPB41L4AQ9HCS5 686 aaPredicted RBP11.84□□□□□ -0.51
CPSF4-213ENST00000484112 ANAPC4Q9UJX5 808 aa11.84□□□□□ -0.51
CPSF4-213ENST00000484112 ZNFX1Q9P2E3 1918 aaKnown RBP11.84□□□□□ -0.51
CPSF4-213ENST00000484112 BAZ2AQ9UIF9 1905 aaKnown RBP11.84□□□□□ -0.51
CPSF4-213ENST00000484112 A0A0D9SFI3 127 aa11.83□□□□□ -0.52
CPSF4-213ENST00000484112 GRXCR1A8MXD5 290 aa11.83□□□□□ -0.52
CPSF4-213ENST00000484112 SNAI1O95863 264 aaPredicted RBP11.83□□□□□ -0.52
CPSF4-213ENST00000484112 TIMP1P01033 207 aa11.83□□□□□ -0.52
CPSF4-213ENST00000484112 C6orf222P0C671 652 aaPredicted RBP11.83□□□□□ -0.52
CPSF4-213ENST00000484112 GSPT1P15170 499 aaKnown RBP11.83□□□□□ -0.52
CPSF4-213ENST00000484112 KLHDC9Q8NEP7 349 aa11.83□□□□□ -0.52
CPSF4-213ENST00000484112 FAM227BQ96M60 508 aa11.83□□□□□ -0.52
CPSF4-213ENST00000484112 TEX13BQ9BXU2 312 aa11.83□□□□□ -0.52
CPSF4-213ENST00000484112 MKNK2Q9HBH9 465 aa11.83□□□□□ -0.52
CPSF4-213ENST00000484112 SYNPO2Q9UMS6 1093 aa11.83□□□□□ -0.52
CPSF4-213ENST00000484112 RIPK3Q9Y572 518 aa11.83□□□□□ -0.52
CPSF4-213ENST00000484112 A0A0C4DFX4 3053 aa11.82□□□□□ -0.52
CPSF4-213ENST00000484112 MINDY4BA8MYZ0 360 aa11.82□□□□□ -0.52
CPSF4-213ENST00000484112 F5H6K3 240 aa11.82□□□□□ -0.52
CPSF4-213ENST00000484112 ZBED4O75132 1171 aa11.82□□□□□ -0.52
CPSF4-213ENST00000484112 ACRP10323 421 aa11.82□□□□□ -0.52
CPSF4-213ENST00000484112 HSPD1P10809 573 aaKnown RBP11.82□□□□□ -0.52
CPSF4-213ENST00000484112 PBX2P40425 430 aa11.82□□□□□ -0.52
CPSF4-213ENST00000484112 KLRC3Q07444 240 aa11.82□□□□□ -0.52
CPSF4-213ENST00000484112 PPARAQ07869 468 aa11.82□□□□□ -0.52
CPSF4-213ENST00000484112 ACVR2BQ13705 512 aa11.82□□□□□ -0.52
CPSF4-213ENST00000484112 TJAP1Q5JTD0 557 aa11.82□□□□□ -0.52
CPSF4-213ENST00000484112 MFSD5Q6N075 450 aa11.82□□□□□ -0.52
CPSF4-213ENST00000484112 ANKRD35Q8N283 1001 aa11.82□□□□□ -0.52
CPSF4-213ENST00000484112 MSL3Q8N5Y2 521 aaKnown RBP11.82□□□□□ -0.52
CPSF4-213ENST00000484112 KIFC2Q96AC6 838 aa11.82□□□□□ -0.52
CPSF4-213ENST00000484112 GAS2L1Q99501 681 aaPredicted RBP11.82□□□□□ -0.52
CPSF4-213ENST00000484112 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.82□□□□□ -0.52
CPSF4-213ENST00000484112 PPP1R12CQ9BZL4 782 aa11.82□□□□□ -0.52
CPSF4-213ENST00000484112 SPC25Q9HBM1 224 aa11.82□□□□□ -0.52
CPSF4-213ENST00000484112 RAVER2Q9HCJ3 691 aaKnown RBP11.82□□□□□ -0.52
CPSF4-213ENST00000484112 CLIP2Q9UDT6 1046 aa11.82□□□□□ -0.52
CPSF4-213ENST00000484112 SYNGAP1Q96PV0 1343 aa11.82□□□□□ -0.52
CPSF4-213ENST00000484112 MYH8P13535 1937 aa11.82□□□□□ -0.52
CPSF4-213ENST00000484112 COL11A1P12107 1806 aaPredicted RBP11.81□□□□□ -0.52
CPSF4-213ENST00000484112 FOXP2O15409 715 aa11.81□□□□□ -0.52
CPSF4-213ENST00000484112 DUSP11O75319 330 aaKnown RBP11.81□□□□□ -0.52
CPSF4-213ENST00000484112 NDUFB10O96000 172 aa11.81□□□□□ -0.52
CPSF4-213ENST00000484112 ASGR1P07306 291 aa11.81□□□□□ -0.52
CPSF4-213ENST00000484112 FGRP09769 529 aa11.81□□□□□ -0.52
CPSF4-213ENST00000484112 CSF2RAP15509 400 aa11.81□□□□□ -0.52
CPSF4-213ENST00000484112 PPIGQ13427 754 aaKnown RBP eCLIP11.81□□□□□ -0.524e-6■□□□□ 10.4
CPSF4-213ENST00000484112 BMP2KLQ5H9B9 411 aa11.81□□□□□ -0.52
CPSF4-213ENST00000484112 GNASQ5JWF2 1037 aa11.81□□□□□ -0.52
CPSF4-213ENST00000484112 TMEM240Q5SV17 173 aa11.81□□□□□ -0.52
CPSF4-213ENST00000484112 CCSAPQ6IQ19 270 aaPredicted RBP11.81□□□□□ -0.52
CPSF4-213ENST00000484112 CCDC174Q6PII3 467 aa11.81□□□□□ -0.52
CPSF4-213ENST00000484112 CWC27Q6UX04 472 aaKnown RBP11.81□□□□□ -0.52
CPSF4-213ENST00000484112 C16orf59Q7L2K0 433 aa11.81□□□□□ -0.52
CPSF4-213ENST00000484112 ZNF444Q8N0Y2 327 aaPredicted RBP11.81□□□□□ -0.52
CPSF4-213ENST00000484112 TMEM199Q8N511 208 aa11.81□□□□□ -0.52
CPSF4-213ENST00000484112 PRPF38AQ8NAV1 312 aaKnown RBP11.81□□□□□ -0.52
CPSF4-213ENST00000484112 PCSK9Q8NBP7 692 aaKnown RBP11.81□□□□□ -0.52
CPSF4-213ENST00000484112 DSCC1Q9BVC3 393 aa11.81□□□□□ -0.52
CPSF4-213ENST00000484112 PBX4Q9BYU1 374 aa11.81□□□□□ -0.52
CPSF4-213ENST00000484112 PRDM12Q9H4Q4 367 aa11.81□□□□□ -0.52
CPSF4-213ENST00000484112 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.81□□□□□ -0.52
CPSF4-213ENST00000484112 PPP4R2Q9NY27 417 aa11.81□□□□□ -0.52
CPSF4-213ENST00000484112 CTNNA3Q9UI47 895 aa11.81□□□□□ -0.52
CPSF4-213ENST00000484112 TBX21Q9UL17 535 aa11.81□□□□□ -0.52
CPSF4-213ENST00000484112 ISY1Q9ULR0 285 aaKnown RBP11.81□□□□□ -0.52
CPSF4-213ENST00000484112 MROH7Q68CQ1 1323 aa11.81□□□□□ -0.52
CPSF4-213ENST00000484112 PLIN4Q96Q06 1357 aa11.8□□□□□ -0.52
CPSF4-213ENST00000484112 A0A0U1RQG5 324 aaPredicted RBP11.8□□□□□ -0.52
CPSF4-213ENST00000484112 ARVCFO00192 962 aa11.8□□□□□ -0.52
CPSF4-213ENST00000484112 TNFRSF10AO00220 468 aa11.8□□□□□ -0.52
CPSF4-213ENST00000484112 TLR3O15455 904 aaKnown RBP11.8□□□□□ -0.52
CPSF4-213ENST00000484112 FGAP02671 866 aa11.8□□□□□ -0.52
CPSF4-213ENST00000484112 RASA1P20936 1047 aa11.8□□□□□ -0.52
CPSF4-213ENST00000484112 CCDC85BQ15834 202 aaPredicted RBP11.8□□□□□ -0.52
CPSF4-213ENST00000484112 CCDC144BQ3MJ40 725 aa11.8□□□□□ -0.52
CPSF4-213ENST00000484112 MAMDC4Q6UXC1 1216 aa11.8□□□□□ -0.52
CPSF4-213ENST00000484112 ZNF365Q70YC5 407 aa11.8□□□□□ -0.52
CPSF4-213ENST00000484112 NOL8Q76FK4 1167 aaKnown RBP11.8□□□□□ -0.52
CPSF4-213ENST00000484112 ZNF589Q86UQ0 364 aaPredicted RBP11.8□□□□□ -0.52
CPSF4-213ENST00000484112 RNF41Q9H4P4 317 aaPredicted RBP11.8□□□□□ -0.52
CPSF4-213ENST00000484112 PLXNA1Q9UIW2 1896 aa11.8□□□□□ -0.52
CPSF4-213ENST00000484112 ELP1O95163 1332 aa11.8□□□□□ -0.52
CPSF4-213ENST00000484112 PARP14Q460N5 1801 aa11.79□□□□□ -0.52
CPSF4-213ENST00000484112 UNC80Q8N2C7 3258 aa11.79□□□□□ -0.52
CPSF4-213ENST00000484112 DNAJC25-GNG10A0A024R161 153 aa11.79□□□□□ -0.52
CPSF4-213ENST00000484112 ADCY6O43306 1168 aa11.79□□□□□ -0.52
CPSF4-213ENST00000484112 ORC4O43929 436 aa11.79□□□□□ -0.52
CPSF4-213ENST00000484112 IGFBP4P22692 258 aa11.79□□□□□ -0.52
CPSF4-213ENST00000484112 CHMLP26374 656 aa11.79□□□□□ -0.52
CPSF4-213ENST00000484112 CYP2C18P33260 490 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms