RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 MYBL2P10244 700 aa14.87□□□□□ -0.03
USP40-214ENST00000483519 IDEP14735 1019 aa14.87□□□□□ -0.03
USP40-214ENST00000483519 EEF1GP26641 437 aaKnown RBP14.87□□□□□ -0.03
USP40-214ENST00000483519 PHKA1P46020 1223 aa14.87□□□□□ -0.03
USP40-214ENST00000483519 LIG3P49916 1009 aa14.87□□□□□ -0.03
USP40-214ENST00000483519 PDXDC2PQ6P474 469 aa14.87□□□□□ -0.03
USP40-214ENST00000483519 MAGEB6Q8N7X4 407 aa14.87□□□□□ -0.03
USP40-214ENST00000483519 VGLL2Q8N8G2 317 aa14.87□□□□□ -0.03
USP40-214ENST00000483519 ARMT1Q9H993 441 aa14.87□□□□□ -0.03
USP40-214ENST00000483519 PDE8BO95263 885 aa14.87□□□□□ -0.03
USP40-214ENST00000483519 RPN1P04843 607 aaKnown RBP14.87□□□□□ -0.03
USP40-214ENST00000483519 ZNF174Q15697 407 aa14.87□□□□□ -0.03
USP40-214ENST00000483519 MEA1Q16626 185 aa14.87□□□□□ -0.03
USP40-214ENST00000483519 EARS2Q5JPH6 523 aaKnown RBP14.87□□□□□ -0.03
USP40-214ENST00000483519 JADE2Q9NQC1 790 aa14.87□□□□□ -0.03
USP40-214ENST00000483519 PES1O00541 588 aaKnown RBP14.86□□□□□ -0.03
USP40-214ENST00000483519 PTGDRQ13258 359 aa14.86□□□□□ -0.03
USP40-214ENST00000483519 WDR59Q6PJI9 974 aa14.86□□□□□ -0.03
USP40-214ENST00000483519 KIF6Q6ZMV9 814 aa14.86□□□□□ -0.03
USP40-214ENST00000483519 CCDC170Q8IYT3 715 aa14.86□□□□□ -0.03
USP40-214ENST00000483519 TSGA10Q9BZW7 698 aa14.86□□□□□ -0.03
USP40-214ENST00000483519 RREB1Q92766 1687 aa14.86□□□□□ -0.03
USP40-214ENST00000483519 PDS5AQ29RF7 1337 aaKnown RBP14.86□□□□□ -0.03
USP40-214ENST00000483519 GNGT1P63211 74 aa14.86□□□□□ -0.03
USP40-214ENST00000483519 CCDC125Q86Z20 511 aa14.86□□□□□ -0.03
USP40-214ENST00000483519 MMGT1Q8N4V1 131 aa14.86□□□□□ -0.03
USP40-214ENST00000483519 MAGEC2Q9UBF1 373 aaPredicted RBP14.86□□□□□ -0.03
USP40-214ENST00000483519 MYH2Q9UKX2 1941 aa14.86□□□□□ -0.03
USP40-214ENST00000483519 PRPF3O43395 683 aaKnown RBP14.86□□□□□ -0.03
USP40-214ENST00000483519 INPP5BP32019 993 aa14.86□□□□□ -0.03
USP40-214ENST00000483519 ITIH3Q06033 890 aa14.86□□□□□ -0.03
USP40-214ENST00000483519 C2orf54Q08AI8 447 aa14.86□□□□□ -0.03
USP40-214ENST00000483519 PKN1Q16512 942 aa14.86□□□□□ -0.03
USP40-214ENST00000483519 SND1Q7KZF4 910 aaKnown RBP eCLIP14.86□□□□□ -0.03
USP40-214ENST00000483519 SHISA4Q96DD7 197 aa14.86□□□□□ -0.03
USP40-214ENST00000483519 RUFY1Q96T51 708 aa14.86□□□□□ -0.03
USP40-214ENST00000483519 NUP58Q9BVL2 599 aa14.86□□□□□ -0.03
USP40-214ENST00000483519 GREM2Q9H772 168 aa14.86□□□□□ -0.03
USP40-214ENST00000483519 MTMR7Q9Y216 660 aa14.86□□□□□ -0.03
USP40-214ENST00000483519 ATXN2Q99700 1313 aaKnown RBP14.85□□□□□ -0.03
USP40-214ENST00000483519 PRCPP42785 496 aa14.85□□□□□ -0.03
USP40-214ENST00000483519 DNM2P50570 870 aa14.85□□□□□ -0.03
USP40-214ENST00000483519 FAM182BQ5T319 152 aa14.85□□□□□ -0.03
USP40-214ENST00000483519 ILDR2Q71H61 639 aa14.85□□□□□ -0.03
USP40-214ENST00000483519 SPATA5Q8NB90 893 aa14.85□□□□□ -0.03
USP40-214ENST00000483519 RETREG2Q8NC44 543 aa14.85□□□□□ -0.03
USP40-214ENST00000483519 ZNF507Q8TCN5 953 aa14.85□□□□□ -0.03
USP40-214ENST00000483519 SH3GL2Q99962 352 aa14.85□□□□□ -0.03
USP40-214ENST00000483519 THAP9Q9H5L6 903 aa14.85□□□□□ -0.03
USP40-214ENST00000483519 SLC4A4Q9Y6R1 1079 aa14.85□□□□□ -0.03
USP40-214ENST00000483519 GRIN2DO15399 1336 aa14.85□□□□□ -0.03
USP40-214ENST00000483519 DOCK2Q92608 1830 aa14.85□□□□□ -0.03
USP40-214ENST00000483519 PDE2AO00408 941 aaPredicted RBP14.85□□□□□ -0.03
USP40-214ENST00000483519 ZNF185O15231 689 aa14.85□□□□□ -0.03
USP40-214ENST00000483519 KIF5AQ12840 1032 aa14.85□□□□□ -0.03
USP40-214ENST00000483519 ANKRD18AQ8IVF6 992 aa14.85□□□□□ -0.03
USP40-214ENST00000483519 TEX2Q8IWB9 1127 aa14.85□□□□□ -0.03
USP40-214ENST00000483519 PURBQ96QR8 312 aaKnown RBP14.85□□□□□ -0.03
USP40-214ENST00000483519 TFR2Q9UP52 801 aa14.85□□□□□ -0.03
USP40-214ENST00000483519 GDAQ9Y2T3 454 aa14.85□□□□□ -0.03
USP40-214ENST00000483519 ZNF330Q9Y3S2 320 aaPredicted RBP14.85□□□□□ -0.03
USP40-214ENST00000483519 TNKSO95271 1327 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 PNPLA7Q6ZV29 1317 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 KAT6BQ8WYB5 2073 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 WNT7AO00755 349 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 EPB41P11171 864 aaKnown RBP14.84□□□□□ -0.03
USP40-214ENST00000483519 TRIM21P19474 475 aaKnown RBP14.84□□□□□ -0.03
USP40-214ENST00000483519 CTSWP56202 376 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 PUM3Q15397 648 aaKnown RBP14.84□□□□□ -0.03
USP40-214ENST00000483519 B4GALNT4Q76KP1 1039 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 ZNF572Q7Z3I7 529 aaPredicted RBP14.84□□□□□ -0.03
USP40-214ENST00000483519 IRF2BP1Q8IU81 584 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 TRIM58Q8NG06 486 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 LPIN2Q92539 896 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 ESR2Q92731 530 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 KAT2BQ92831 832 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 MTRQ99707 1265 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 NHEJ1Q9H9Q4 299 aaPredicted RBP14.84□□□□□ -0.03
USP40-214ENST00000483519 RBM28Q9NW13 759 aaKnown RBP14.84□□□□□ -0.03
USP40-214ENST00000483519 MAPK8IP1Q9UQF2 711 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 PRDM1O75626 825 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 TRAPPC10P48553 1259 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 EPHB4P54760 987 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 ALS2CLQ60I27 953 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 SPATS2Q86XZ4 545 aaKnown RBP14.84□□□□□ -0.03
USP40-214ENST00000483519 ADSSL1Q8N142 457 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 NOC3LQ8WTT2 800 aaKnown RBP14.84□□□□□ -0.03
USP40-214ENST00000483519 TNFRSF25Q93038 417 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 LACRTQ9GZZ8 138 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 KCNG1Q9UIX4 513 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 SNX12Q9UMY4 172 aa14.84□□□□□ -0.03
USP40-214ENST00000483519 PRKAB2O43741 272 aa14.83□□□□□ -0.04
USP40-214ENST00000483519 MNAT1P51948 309 aa14.83□□□□□ -0.04
USP40-214ENST00000483519 SKOR1P84550 965 aa14.83□□□□□ -0.04
USP40-214ENST00000483519 SEC23AQ15436 765 aa14.83□□□□□ -0.04
USP40-214ENST00000483519 EMBQ6PCB8 327 aa14.83□□□□□ -0.04
USP40-214ENST00000483519 KCTD17Q8N5Z5 321 aa14.83□□□□□ -0.04
USP40-214ENST00000483519 ARAP2Q8WZ64 1704 aa14.83□□□□□ -0.04
USP40-214ENST00000483519 MACROD2A1Z1Q3 448 aa14.83□□□□□ -0.04
USP40-214ENST00000483519 HSF2BPO75031 334 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms