RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 HSD3B7Q9H2F3 369 aa16.42■□□□□ 0.22
CHD3-211ENST00000481999 PI4KBQ9UBF8 816 aa16.42■□□□□ 0.22
CHD3-211ENST00000481999 SEC63Q9UGP8 760 aaKnown RBP16.42■□□□□ 0.22
CHD3-211ENST00000481999 USP17L10C9JJH3 530 aa16.41■□□□□ 0.22
CHD3-211ENST00000481999 CSRNP1Q96S65 589 aa16.41■□□□□ 0.22
CHD3-211ENST00000481999 ZMYND12Q9H0C1 365 aa16.41■□□□□ 0.22
CHD3-211ENST00000481999 JMJD4Q9H9V9 463 aa16.41■□□□□ 0.22
CHD3-211ENST00000481999 SWAP70Q9UH65 585 aa16.41■□□□□ 0.22
CHD3-211ENST00000481999 SNHG28P0DPA3 235 aa16.41■□□□□ 0.22
CHD3-211ENST00000481999 ZNF543Q08ER8 600 aa16.41■□□□□ 0.22
CHD3-211ENST00000481999 LETM2Q2VYF4 491 aa16.41■□□□□ 0.22
CHD3-211ENST00000481999 SMYD4Q8IYR2 804 aaPredicted RBP16.41■□□□□ 0.22
CHD3-211ENST00000481999 ZNF579Q8NAF0 562 aaKnown RBP16.41■□□□□ 0.22
CHD3-211ENST00000481999 RIOX1Q9H6W3 641 aa16.41■□□□□ 0.22
CHD3-211ENST00000481999 SH3GLB2Q9NR46 395 aa16.41■□□□□ 0.22
CHD3-211ENST00000481999 COBLO75128 1261 aa16.4■□□□□ 0.22
CHD3-211ENST00000481999 DHX8Q14562 1220 aaKnown RBP16.4■□□□□ 0.22
CHD3-211ENST00000481999 UBE2SQ16763 222 aa16.4■□□□□ 0.22
CHD3-211ENST00000481999 TRMT44Q8IYL2 757 aaKnown RBP16.4■□□□□ 0.22
CHD3-211ENST00000481999 SPICE1Q8N0Z3 855 aa16.4■□□□□ 0.22
CHD3-211ENST00000481999 BLZF1Q9H2G9 400 aa16.4■□□□□ 0.22
CHD3-211ENST00000481999 MAN1B1Q9UKM7 699 aa16.4■□□□□ 0.22
CHD3-211ENST00000481999 EGFRP00533 1210 aa16.4■□□□□ 0.22
CHD3-211ENST00000481999 CCZ1BP86790 482 aa16.4■□□□□ 0.22
CHD3-211ENST00000481999 CCZ1P86791 482 aaPredicted RBP16.4■□□□□ 0.22
CHD3-211ENST00000481999 SYCP1Q15431 976 aa16.4■□□□□ 0.22
CHD3-211ENST00000481999 RSBN1LQ6PCB5 846 aaPredicted RBP16.4■□□□□ 0.22
CHD3-211ENST00000481999 CCDC112Q8NEF3 446 aa16.4■□□□□ 0.22
CHD3-211ENST00000481999 ANKRD7Q92527 254 aa16.4■□□□□ 0.22
CHD3-211ENST00000481999 VEZTQ9HBM0 779 aa16.4■□□□□ 0.22
CHD3-211ENST00000481999 GH2P01242 217 aa16.39■□□□□ 0.21
CHD3-211ENST00000481999 KARSQ15046 597 aaKnown RBP16.39■□□□□ 0.21
CHD3-211ENST00000481999 CCDC148Q8NFR7 591 aa16.39■□□□□ 0.21
CHD3-211ENST00000481999 MTRQ99707 1265 aa16.39■□□□□ 0.21
CHD3-211ENST00000481999 KCND1Q9NSA2 647 aa16.39■□□□□ 0.21
CHD3-211ENST00000481999 SPDYE2BA6NHP3 402 aa16.39■□□□□ 0.21
CHD3-211ENST00000481999 CCNT1O60563 726 aaKnown RBP16.39■□□□□ 0.21
CHD3-211ENST00000481999 SPDYE6P0CI01 402 aa16.39■□□□□ 0.21
CHD3-211ENST00000481999 FKBP1AP62942 108 aaKnown RBP16.39■□□□□ 0.21
CHD3-211ENST00000481999 FMR1Q06787 632 aaKnown RBP eCLIP16.39■□□□□ 0.21
CHD3-211ENST00000481999 CEP135Q66GS9 1140 aa16.39■□□□□ 0.21
CHD3-211ENST00000481999 MIGA2Q7L4E1 593 aa16.39■□□□□ 0.21
CHD3-211ENST00000481999 CCDC84Q86UT8 332 aaPredicted RBP16.39■□□□□ 0.21
CHD3-211ENST00000481999 GJA10Q969M2 543 aa16.39■□□□□ 0.21
CHD3-211ENST00000481999 EHD4Q9H223 541 aa16.39■□□□□ 0.21
CHD3-211ENST00000481999 GREB1LQ9C091 1923 aaPredicted RBP16.38■□□□□ 0.21
CHD3-211ENST00000481999 IKBKBO14920 756 aa16.38■□□□□ 0.21
CHD3-211ENST00000481999 SMC2O95347 1197 aa16.38■□□□□ 0.21
CHD3-211ENST00000481999 NT5C2P49902 561 aa16.38■□□□□ 0.21
CHD3-211ENST00000481999 HDLBPQ00341 1268 aaKnown RBP16.38■□□□□ 0.21
CHD3-211ENST00000481999 PDCL2Q8N4E4 241 aa16.38■□□□□ 0.21
CHD3-211ENST00000481999 TBCKQ8TEA7 893 aa16.38■□□□□ 0.21
CHD3-211ENST00000481999 LRRC15Q8TF66 581 aa16.38■□□□□ 0.21
CHD3-211ENST00000481999 MED15Q96RN5 788 aa16.38■□□□□ 0.21
CHD3-211ENST00000481999 LZTS2Q9BRK4 669 aa16.38■□□□□ 0.21
CHD3-211ENST00000481999 TRIM34Q9BYJ4 488 aa16.38■□□□□ 0.21
CHD3-211ENST00000481999 TMEM39BQ9GZU3 492 aa16.38■□□□□ 0.21
CHD3-211ENST00000481999 DHX36Q9H2U1 1008 aaKnown RBP16.38■□□□□ 0.21
CHD3-211ENST00000481999 ECE1P42892 770 aa16.38■□□□□ 0.21
CHD3-211ENST00000481999 ICA1Q05084 483 aa16.38■□□□□ 0.21
CHD3-211ENST00000481999 PTPN14Q15678 1187 aa16.38■□□□□ 0.21
CHD3-211ENST00000481999 CC2D2BQ6DHV5 1058 aa16.38■□□□□ 0.21
CHD3-211ENST00000481999 RTKN2Q8IZC4 609 aa16.38■□□□□ 0.21
CHD3-211ENST00000481999 CCDC150Q8NCX0 1101 aa16.38■□□□□ 0.21
CHD3-211ENST00000481999 SUPT20HQ8NEM7 779 aa16.38■□□□□ 0.21
CHD3-211ENST00000481999 FERMT2Q96AC1 680 aa16.38■□□□□ 0.21
CHD3-211ENST00000481999 PAGE5Q96GU1 130 aa16.38■□□□□ 0.21
CHD3-211ENST00000481999 GMLQ99445 158 aa16.38■□□□□ 0.21
CHD3-211ENST00000481999 MRIQ9BWK5 157 aa16.38■□□□□ 0.21
CHD3-211ENST00000481999 XPO4Q9C0E2 1151 aaKnown RBP16.38■□□□□ 0.21
CHD3-211ENST00000481999 SMCHD1A6NHR9 2005 aa16.37■□□□□ 0.21
CHD3-211ENST00000481999 A0A1W2PRG0 241 aa16.37■□□□□ 0.21
CHD3-211ENST00000481999 EDIL3O43854 480 aa16.37■□□□□ 0.21
CHD3-211ENST00000481999 NBPF9Q3BBW0 867 aa16.37■□□□□ 0.21
CHD3-211ENST00000481999 ASPRV1Q53RT3 343 aa16.37■□□□□ 0.21
CHD3-211ENST00000481999 TATDN1Q6P1N9 297 aa16.37■□□□□ 0.21
CHD3-211ENST00000481999 NYAP1Q6ZVC0 841 aa16.37■□□□□ 0.21
CHD3-211ENST00000481999 PSMD1Q99460 953 aa16.37■□□□□ 0.21
CHD3-211ENST00000481999 ARID3AQ99856 593 aa16.37■□□□□ 0.21
CHD3-211ENST00000481999 IFNKQ9P0W0 207 aa16.37■□□□□ 0.21
CHD3-211ENST00000481999 SLC1A4P43007 532 aa16.37■□□□□ 0.21
CHD3-211ENST00000481999 TRAPPC10P48553 1259 aa16.37■□□□□ 0.21
CHD3-211ENST00000481999 CXCL9Q07325 125 aa16.37■□□□□ 0.21
CHD3-211ENST00000481999 DAGLBQ8NCG7 672 aa16.37■□□□□ 0.21
CHD3-211ENST00000481999 DPF2Q92785 391 aa16.37■□□□□ 0.21
CHD3-211ENST00000481999 VIL1P09327 827 aaKnown RBP16.36■□□□□ 0.21
CHD3-211ENST00000481999 SARSP49591 514 aaKnown RBP16.36■□□□□ 0.21
CHD3-211ENST00000481999 E2F4Q16254 413 aa16.36■□□□□ 0.21
CHD3-211ENST00000481999 ABCB5Q2M3G0 1257 aa16.36■□□□□ 0.21
CHD3-211ENST00000481999 SOGA3Q5TF21 947 aa16.36■□□□□ 0.21
CHD3-211ENST00000481999 CCAR2Q8N163 923 aaKnown RBP16.36■□□□□ 0.21
CHD3-211ENST00000481999 REXO1Q8N1G1 1221 aaKnown RBP16.36■□□□□ 0.21
CHD3-211ENST00000481999 SMARCE1Q969G3 411 aa16.36■□□□□ 0.21
CHD3-211ENST00000481999 FANCLQ9NW38 375 aa16.36■□□□□ 0.21
CHD3-211ENST00000481999 USP27XA6NNY8 438 aa16.36■□□□□ 0.21
CHD3-211ENST00000481999 DLGAP5Q15398 846 aa16.36■□□□□ 0.21
CHD3-211ENST00000481999 RBM26Q5T8P6 1007 aaKnown RBP16.36■□□□□ 0.21
CHD3-211ENST00000481999 KLHL10Q6JEL2 608 aa16.36■□□□□ 0.21
CHD3-211ENST00000481999 POTEDQ86YR6 584 aa16.36■□□□□ 0.21
CHD3-211ENST00000481999 C6orf50Q9HD87 102 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms