RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, human

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13D-208	ENST00000481484	VCAM1	P19320	739 aa		4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	ERVK-9	P63128	1117 aa		4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	ERVK-24	P63145	666 aa		4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	USP17L24	Q0WX57	530 aa		4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	UBE3C	Q15386	1083 aa		4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	MTFR1	Q15390	333 aa		4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	ABCB5	Q2M3G0	1257 aa		4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	CERKL	Q49MI3	558 aa	Predicted RBP	4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	SLC9C2	Q5TAH2	1124 aa		4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	MAP3K21	Q5TCX8	1036 aa		4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	NECAB2	Q7Z6G3	386 aa		4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	ZNF511	Q8NB15	262 aa		4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	SHCBP1	Q8NEM2	672 aa		4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	CCDC17	Q96LX7	622 aa		4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	ARHGEF10L	Q9HCE6	1279 aa		4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	HMX1	Q9NP08	348 aa	Predicted RBP	4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	ZBTB40	Q9NUA8	1239 aa		4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	PAG1	Q9NWQ8	432 aa		4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	SLC5A4	Q9NY91	659 aa		4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	ARPP21	Q9UBL0	812 aa	Predicted RBP	4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	RCAN3	Q9UKA8	241 aa		4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	SYNPO2	Q9UMS6	1093 aa		4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	PLIN4	Q96Q06	1357 aa		4.99	□□□□□ -1.61
VPS13D-208	ENST00000481484	SLC15A5	A6NIM6	579 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	AXIN1	O15169	862 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	WDR46	O15213	610 aa	Known RBP	4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	POLR3D	P05423	398 aa	Predicted RBP	4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	ZFY	P08048	801 aa	Predicted RBP	4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	HOXC6	P09630	235 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	ELN	P15502	786 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	ATP5J	P18859	108 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	VARS	P26640	1264 aa	Known RBP	4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	CTH	P32929	405 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	SHMT1	P34896	483 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	ICA1	Q05084	483 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	GABPA	Q06546	454 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	PPP2R2D	Q66LE6	453 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	GIMAP6	Q6P9H5	292 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	GPR142	Q7Z601	462 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	PLEKHH3	Q7Z736	793 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	CCDC84	Q86UT8	332 aa	Predicted RBP	4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	ABRA	Q8N0Z2	381 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	MIGA1	Q8NAN2	632 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	EHBP1	Q8NDI1	1231 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	PANK1	Q8TE04	598 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	TRIB2	Q92519	343 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	DEFB118	Q96PH6	123 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	DNAJC2	Q99543	621 aa	Known RBP	4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	HAUS7	Q99871	368 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	LRRCC1	Q9C099	1032 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	CCDC8	Q9H0W5	538 aa	Predicted RBP	4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	ZNF287	Q9HBT7	754 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	MCM9	Q9NXL9	1143 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	MAP10	Q9P2G4	905 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	SAP30BP	Q9UHR5	308 aa	Known RBP	4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	NRBP1	Q9UHY1	535 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	DACH1	Q9UI36	760 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	PALD1	Q9ULE6	856 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	GABRQ	Q9UN88	632 aa		4.98	□□□□□ -1.61
VPS13D-208	ENST00000481484	ZNF532	Q9HCE3	1301 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	MYH6	P13533	1939 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	TCRBV5S4A2T	A0A5A2	114 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484		H0YGN5	161 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	GOLIM4	O00461	696 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	STRN	O43815	780 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	MBD4	O95243	580 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	MYC	P01106	439 aa	Predicted RBP	4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	TFRC	P02786	760 aa	Known RBP	4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	GNAT2	P19087	354 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	ADD2	P35612	726 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	FXR1	P51114	621 aa	Known RBP eCLIP	4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	DYNLL1	P63167	89 aa	Known RBP	4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	AAMP	Q13685	434 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	GRB14	Q14449	540 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	RAB3GAP1	Q15042	981 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	MFSD14C	Q5VZR4	134 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	CATSPERG	Q6ZRH7	1159 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	C16orf86	Q6ZW13	317 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	TICAM2	Q86XR7	235 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	USP6NL	Q92738	828 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	DPF3	Q92784	378 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	HPS1	Q92902	700 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	PAGR1	Q9BTK6	254 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	TANGO6	Q9C0B7	1094 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	MROH8	Q9H579	483 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	GOPC	Q9HD26	462 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	IL1RAPL2	Q9NP60	686 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	DCP1A	Q9NPI6	582 aa	Predicted RBP	4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	ECHDC1	Q9NTX5	307 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	OGDHL	Q9ULD0	1010 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	TTC41P	Q6P2S7	1318 aa		4.97	□□□□□ -1.61
VPS13D-208	ENST00000481484	SMCHD1	A6NHR9	2005 aa		4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	MPHOSPH10	O00566	681 aa	Known RBP	4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	ERC2	O15083	957 aa		4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	SLC25A27	O95847	323 aa		4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	NT5C2	P49902	561 aa		4.96	□□□□□ -1.62
VPS13D-208	ENST00000481484	CTDSPL2	Q05D32	466 aa		4.96	□□□□□ -1.62

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