RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 STXBP5LQ9Y2K9 1186 aa14.55□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 SYNRGQ9UMZ2 1314 aa14.55□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 UNC80Q8N2C7 3258 aa14.55□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 CDH23Q9H251 3354 aa14.55□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 KIAA0355O15063 1070 aa14.54□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 CTAGE5O15320 804 aa14.54□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 STAT2P52630 851 aa14.54□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 CTDSPL2Q05D32 466 aa14.54□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 ACVR2BQ13705 512 aa14.54□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 SHHQ15465 462 aa14.54□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 PPP4R3BQ5MIZ7 849 aa14.54□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 C9orf50Q5SZB4 431 aa14.54□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 RCSD1Q6JBY9 416 aa14.54□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 FAM160B2Q86V87 743 aa14.54□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 CHURC1Q8WUH1 139 aa14.54□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 BADQ92934 168 aa14.54□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 UPF3AQ9H1J1 476 aaKnown RBP14.54□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 ABHD16BQ9H3Z7 469 aa14.54□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.54□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 PRKAG2Q9UGJ0 569 aa14.54□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 LCTP09848 1927 aa14.54□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 CUL9Q8IWT3 2517 aa14.54□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 ZMYM6O95789 1325 aa14.53□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 MYADML2A6NDP7 307 aa14.53□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 MOXD2PA6NHM9 499 aa14.53□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 NMT2O60551 498 aa14.53□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 FGAP02671 866 aa14.53□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 MCCP23508 829 aa14.53□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 CDK7P50613 346 aa14.53□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 ACLYP53396 1101 aa14.53□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 CNTN2Q02246 1040 aa14.53□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 KCNA10Q16322 511 aa14.53□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 ARMCX2Q7L311 632 aa14.53□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 SMC5Q8IY18 1101 aa14.53□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 ANKRD35Q8N283 1001 aa14.53□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 AGBL1Q96MI9 1066 aa14.53□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 TCP11L1Q9NUJ3 509 aa14.53□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 EYSQ5T1H1 3165 aa14.53□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 ASTN1O14525 1302 aa14.52□□□□□ -0.08
MSH5-SAPCD1-205ENST00000476085 A0A0D9SFI3 127 aa14.52□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 SOWAHBA6NEL2 793 aa14.52□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 MYCNP04198 464 aaPredicted RBP14.52□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 SLC1A4P43007 532 aa14.52□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 GJA9P57773 515 aa14.52□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 IRX5P78411 483 aaPredicted RBP14.52□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 FAAP100Q0VG06 881 aa14.52□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 AAMPQ13685 434 aa14.52□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 TKFCQ3LXA3 575 aa14.52□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 CCDC144BQ3MJ40 725 aa14.52□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 BTNL9Q6UXG8 535 aa14.52□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 KCTD1Q719H9 257 aa14.52□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 CCDC144CPQ8IYA2 1237 aa14.52□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 FAM227BQ96M60 508 aa14.52□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 ACAD9Q9H845 621 aa14.52□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 A1CFQ9NQ94 594 aaKnown RBP14.52□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 ELP1O95163 1332 aa14.51□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 TSPY2A6NKD2 308 aa14.51□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 CLTBP09497 229 aa14.51□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 HSPD1P10809 573 aaKnown RBP14.51□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 EPHB4P54760 987 aa14.51□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 MCMDC2Q4G0Z9 681 aa14.51□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 RASGRP2Q7LDG7 609 aa14.51□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 ZNF589Q86UQ0 364 aaPredicted RBP14.51□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 SLC17A8Q8NDX2 589 aa14.51□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 MORC4Q8TE76 937 aa14.51□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 GUCD1Q96NT3 240 aa14.51□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 PRDM5Q9NQX1 630 aaPredicted RBP14.51□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 PRR12Q9ULL5 1215 aa14.51□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 STX8Q9UNK0 236 aa14.51□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 CTDP1Q9Y5B0 961 aaPredicted RBP14.51□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 PRUNE2Q8WUY3 3088 aa14.51□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 SLC4A3P48751 1232 aa14.5□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 NUP133Q8WUM0 1156 aa14.5□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 TRERF1Q96PN7 1200 aa14.5□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 OSBPL3Q9H4L5 887 aa14.5□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 RNF146Q9NTX7 359 aa14.5□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 ZHX1Q9UKY1 873 aaPredicted RBP14.5□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 TBX21Q9UL17 535 aa14.5□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 GNEQ9Y223 722 aaKnown RBP14.5□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 LRRC37A2A6NM11 1700 aa14.49□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 RANBP6O60518 1105 aaKnown RBP14.49□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 ASGR1P07306 291 aa14.49□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 SMAD3P84022 425 aaKnown RBP14.49□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 MUM1L1Q5H9M0 696 aa14.49□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 SLC43A3Q8NBI5 491 aa14.49□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 PCSK9Q8NBP7 692 aaKnown RBP14.49□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 DCAF4Q8WV16 495 aa14.49□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 TMEM47Q9BQJ4 181 aa14.49□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 RANBP17Q9H2T7 1088 aaKnown RBP14.49□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 STARD7Q9NQZ5 370 aa14.49□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 HOMER2Q9NSB8 354 aa14.49□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 CYP39A1Q9NYL5 469 aa14.49□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.48□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 ASB14A6NK59 587 aa14.48□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 PQBP1O60828 265 aaKnown RBP14.48□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 ICAM1P05362 532 aa14.48□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 C6orf222P0C671 652 aaPredicted RBP14.48□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 SNHG28P0DPA3 235 aa14.48□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 SNAP25P60880 206 aa14.48□□□□□ -0.09
MSH5-SAPCD1-205ENST00000476085 NMIQ13287 307 aaPredicted RBP14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms