RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 TMEM105Q8N8V8 129 aa6□□□□□ -1.45
USP4-209ENST00000475873 PCSK9Q8NBP7 692 aaKnown RBP6□□□□□ -1.45
USP4-209ENST00000475873 PPP1R13LQ8WUF5 828 aa6□□□□□ -1.45
USP4-209ENST00000475873 NKD2Q969F2 451 aaPredicted RBP6□□□□□ -1.45
USP4-209ENST00000475873 NSUN4Q96CB9 384 aaKnown RBP6□□□□□ -1.45
USP4-209ENST00000475873 MRPL38Q96DV4 380 aaKnown RBP6□□□□□ -1.45
USP4-209ENST00000475873 TGS1Q96RS0 853 aaKnown RBP6□□□□□ -1.45
USP4-209ENST00000475873 FEZ1Q99689 392 aa6□□□□□ -1.45
USP4-209ENST00000475873 C17orf80Q9BSJ5 609 aa6□□□□□ -1.45
USP4-209ENST00000475873 MROH8Q9H579 483 aa6□□□□□ -1.45
USP4-209ENST00000475873 GINM1Q9NU53 330 aa6□□□□□ -1.45
USP4-209ENST00000475873 TRMT13Q9NUP7 481 aaKnown RBP6□□□□□ -1.45
USP4-209ENST00000475873 SLC5A4Q9NY91 659 aa6□□□□□ -1.45
USP4-209ENST00000475873 DLL3Q9NYJ7 618 aa6□□□□□ -1.45
USP4-209ENST00000475873 ZHX1Q9UKY1 873 aaPredicted RBP6□□□□□ -1.45
USP4-209ENST00000475873 DENND2AQ9ULE3 1009 aa6□□□□□ -1.45
USP4-209ENST00000475873 FAM184BQ9ULE4 1060 aa6□□□□□ -1.45
USP4-209ENST00000475873 CACNA1FO60840 1977 aa6□□□□□ -1.45
USP4-209ENST00000475873 FLT1P17948 1338 aa5.99□□□□□ -1.45
USP4-209ENST00000475873 ASH1LQ9NR48 2969 aaKnown RBP5.99□□□□□ -1.45
USP4-209ENST00000475873 TRIP12Q14669 1992 aaPredicted RBP5.99□□□□□ -1.45
USP4-209ENST00000475873 KDM4AO75164 1064 aa5.99□□□□□ -1.45
USP4-209ENST00000475873 GTF2F1P35269 517 aaKnown RBP eCLIP5.99□□□□□ -1.45
USP4-209ENST00000475873 SIGLEC14Q08ET2 396 aa5.99□□□□□ -1.45
USP4-209ENST00000475873 PLS1Q14651 629 aa5.99□□□□□ -1.45
USP4-209ENST00000475873 COG2Q14746 738 aa5.99□□□□□ -1.45
USP4-209ENST00000475873 TWISTNBQ3B726 338 aaPredicted RBP5.99□□□□□ -1.45
USP4-209ENST00000475873 CCDC144BQ3MJ40 725 aa5.99□□□□□ -1.45
USP4-209ENST00000475873 TMEM63BQ5T3F8 832 aa5.99□□□□□ -1.45
USP4-209ENST00000475873 CCDC102BQ68D86 513 aa5.99□□□□□ -1.45
USP4-209ENST00000475873 MAMDC4Q6UXC1 1216 aa5.99□□□□□ -1.45
USP4-209ENST00000475873 TBC1D9Q6ZT07 1266 aa5.99□□□□□ -1.45
USP4-209ENST00000475873 RPAINQ86UA6 219 aa5.99□□□□□ -1.45
USP4-209ENST00000475873 MAPKAPK5Q8IW41 473 aa5.99□□□□□ -1.45
USP4-209ENST00000475873 MMP19Q99542 508 aa5.99□□□□□ -1.45
USP4-209ENST00000475873 IRF2BPLQ9H1B7 796 aa5.99□□□□□ -1.45
USP4-209ENST00000475873 ALDH8A1Q9H2A2 487 aaPredicted RBP5.99□□□□□ -1.45
USP4-209ENST00000475873 CLDND1Q9NY35 253 aa5.99□□□□□ -1.45
USP4-209ENST00000475873 DAXXQ9UER7 740 aaPredicted RBP5.99□□□□□ -1.45
USP4-209ENST00000475873 ADAMTS8Q9UP79 889 aa5.99□□□□□ -1.45
USP4-209ENST00000475873 CNPY2Q9Y2B0 182 aa5.99□□□□□ -1.45
USP4-209ENST00000475873 DIS3Q9Y2L1 958 aaKnown RBP5.99□□□□□ -1.45
USP4-209ENST00000475873 NAV2Q8IVL1 2488 aa5.99□□□□□ -1.45
USP4-209ENST00000475873 DNAJC25-GNG10A0A024R161 153 aa5.98□□□□□ -1.45
USP4-209ENST00000475873 LOC730098B7Z3J9 87 aa5.98□□□□□ -1.45
USP4-209ENST00000475873 KIF28PB7ZC32 967 aa5.98□□□□□ -1.45
USP4-209ENST00000475873 EYA2O00167 538 aa5.98□□□□□ -1.45
USP4-209ENST00000475873 STXBP3O00186 592 aa5.98□□□□□ -1.45
USP4-209ENST00000475873 APAF1O14727 1248 aa5.98□□□□□ -1.45
USP4-209ENST00000475873 SEMA3EO15041 775 aa5.98□□□□□ -1.45
USP4-209ENST00000475873 LINC01565O15544 149 aa5.98□□□□□ -1.45
USP4-209ENST00000475873 GJB5O95377 273 aa5.98□□□□□ -1.45
USP4-209ENST00000475873 IQCF3P0C7M6 154 aa5.98□□□□□ -1.45
USP4-209ENST00000475873 EVX2Q03828 476 aa5.98□□□□□ -1.45
USP4-209ENST00000475873 ACVR2BQ13705 512 aa5.98□□□□□ -1.45
USP4-209ENST00000475873 PUM1Q14671 1186 aaKnown RBP eCLIP5.98□□□□□ -1.45
USP4-209ENST00000475873 CBX2Q14781 532 aaPredicted RBP5.98□□□□□ -1.45
USP4-209ENST00000475873 RAB3GAP1Q15042 981 aa5.98□□□□□ -1.45
USP4-209ENST00000475873 ATP2B3Q16720 1220 aa5.98□□□□□ -1.45
USP4-209ENST00000475873 TATDN1Q6P1N9 297 aa5.98□□□□□ -1.45
USP4-209ENST00000475873 EP400NLQ6ZTU2 488 aa5.98□□□□□ -1.45
USP4-209ENST00000475873 ADGRA1Q86SQ6 560 aa5.98□□□□□ -1.45
USP4-209ENST00000475873 FOXP4Q8IVH2 680 aaPredicted RBP5.98□□□□□ -1.45
USP4-209ENST00000475873 KIAA2013Q8IYS2 634 aa5.98□□□□□ -1.45
USP4-209ENST00000475873 BANK1Q8NDB2 785 aa5.98□□□□□ -1.45
USP4-209ENST00000475873 REPS2Q8NFH8 660 aa5.98□□□□□ -1.45
USP4-209ENST00000475873 TGFBRAP1Q8WUH2 860 aa5.98□□□□□ -1.45
USP4-209ENST00000475873 DHX36Q9H2U1 1008 aaKnown RBP5.98□□□□□ -1.45
USP4-209ENST00000475873 C9orf78Q9NZ63 289 aaPredicted RBP5.98□□□□□ -1.45
USP4-209ENST00000475873 SAP30BPQ9UHR5 308 aaKnown RBP5.98□□□□□ -1.45
USP4-209ENST00000475873 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.98□□□□□ -1.45
USP4-209ENST00000475873 DDX49Q9Y6V7 483 aaKnown RBP5.98□□□□□ -1.45
USP4-209ENST00000475873 PDS5AQ29RF7 1337 aaKnown RBP5.98□□□□□ -1.45
USP4-209ENST00000475873 SCN10AQ9Y5Y9 1956 aa5.97□□□□□ -1.45
USP4-209ENST00000475873 MYO5AQ9Y4I1 1855 aaKnown RBP5.97□□□□□ -1.45
USP4-209ENST00000475873 USP14P54578 494 aa5.97□□□□□ -1.45
USP4-209ENST00000475873 HYAL1Q12794 435 aa5.97□□□□□ -1.45
USP4-209ENST00000475873 SMAD4Q13485 552 aaKnown RBP5.97□□□□□ -1.45
USP4-209ENST00000475873 RIOX2Q8IUF8 465 aa5.97□□□□□ -1.45
USP4-209ENST00000475873 CLEC10AQ8IUN9 316 aa5.97□□□□□ -1.45
USP4-209ENST00000475873 SIAH1Q8IUQ4 282 aa5.97□□□□□ -1.45
USP4-209ENST00000475873 SLF2Q8IX21 1173 aa5.97□□□□□ -1.45
USP4-209ENST00000475873 ZGPATQ8N5A5 531 aaKnown RBP5.97□□□□□ -1.45
USP4-209ENST00000475873 MB21D1Q8N884 522 aa5.97□□□□□ -1.45
USP4-209ENST00000475873 FBXO22Q8NEZ5 403 aa5.97□□□□□ -1.45
USP4-209ENST00000475873 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.97□□□□□ -1.45
USP4-209ENST00000475873 CTAGE1Q96RT6 745 aa5.97□□□□□ -1.45
USP4-209ENST00000475873 POP1Q99575 1024 aaKnown RBP5.97□□□□□ -1.45
USP4-209ENST00000475873 TANGO6Q9C0B7 1094 aa5.97□□□□□ -1.45
USP4-209ENST00000475873 FBXO28Q9NVF7 368 aa5.97□□□□□ -1.45
USP4-209ENST00000475873 CDKN2AIPQ9NXV6 580 aaPredicted RBP5.97□□□□□ -1.45
USP4-209ENST00000475873 HOXC10Q9NYD6 342 aa5.97□□□□□ -1.45
USP4-209ENST00000475873 ZNF214Q9UL59 606 aaPredicted RBP5.97□□□□□ -1.45
USP4-209ENST00000475873 ADAMTS5Q9UNA0 930 aa5.97□□□□□ -1.45
USP4-209ENST00000475873 GNEQ9Y223 722 aaKnown RBP5.97□□□□□ -1.45
USP4-209ENST00000475873 FAM50BQ9Y247 325 aa5.97□□□□□ -1.45
USP4-209ENST00000475873 GCN1Q92616 2671 aaKnown RBP5.97□□□□□ -1.45
USP4-209ENST00000475873 SMG1Q96Q15 3661 aaKnown RBP5.97□□□□□ -1.45
USP4-209ENST00000475873 MYO10Q9HD67 2058 aa5.97□□□□□ -1.45
USP4-209ENST00000475873 MICAL3Q7RTP6 2002 aa5.96□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms