RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 ZNF589Q86UQ0 364 aaPredicted RBP8.34□□□□□ -1.07
HDAC3-207ENST00000475549 SMC5Q8IY18 1101 aa8.34□□□□□ -1.07
HDAC3-207ENST00000475549 MSL3Q8N5Y2 521 aaKnown RBP8.34□□□□□ -1.07
HDAC3-207ENST00000475549 STAG1Q8WVM7 1258 aa8.34□□□□□ -1.07
HDAC3-207ENST00000475549 BADQ92934 168 aa8.34□□□□□ -1.07
HDAC3-207ENST00000475549 DDX11Q96FC9 970 aa8.34□□□□□ -1.07
HDAC3-207ENST00000475549 PURBQ96QR8 312 aaKnown RBP8.34□□□□□ -1.07
HDAC3-207ENST00000475549 PDLIM7Q9NR12 457 aa8.34□□□□□ -1.07
HDAC3-207ENST00000475549 HELLSQ9NRZ9 838 aa8.34□□□□□ -1.07
HDAC3-207ENST00000475549 HOMER2Q9NSB8 354 aa8.34□□□□□ -1.07
HDAC3-207ENST00000475549 MTMR10Q9NXD2 777 aa8.34□□□□□ -1.07
HDAC3-207ENST00000475549 STX8Q9UNK0 236 aa8.34□□□□□ -1.07
HDAC3-207ENST00000475549 ZNF236Q9UL36 1845 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 SYNRGQ9UMZ2 1314 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 GREB1LQ9C091 1923 aaPredicted RBP8.33□□□□□ -1.08
HDAC3-207ENST00000475549 ORC4O43929 436 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 PLA2G6O60733 806 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 SLC3A2P08195 630 aaKnown RBP8.33□□□□□ -1.08
HDAC3-207ENST00000475549 HSPD1P10809 573 aaKnown RBP8.33□□□□□ -1.08
HDAC3-207ENST00000475549 SLC1A4P43007 532 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 FAAP100Q0VG06 881 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 NMIQ13287 307 aaPredicted RBP8.33□□□□□ -1.08
HDAC3-207ENST00000475549 ACVR2BQ13705 512 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 KCNA10Q16322 511 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 CCDC144BQ3MJ40 725 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 MCMDC2Q4G0Z9 681 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 MUM1L1Q5H9M0 696 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 TMEM63BQ5T3F8 832 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 B4GALNT3Q6L9W6 998 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 ARMCX2Q7L311 632 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 ZNF467Q7Z7K2 595 aaPredicted RBP8.33□□□□□ -1.08
HDAC3-207ENST00000475549 PLEKHM2Q8IWE5 1019 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 CCDC144CPQ8IYA2 1237 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 ANKRD35Q8N283 1001 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 FAM133AQ8N9E0 248 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 CHST13Q8NET6 341 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 LBHD1Q9BQE6 289 aaPredicted RBP8.33□□□□□ -1.08
HDAC3-207ENST00000475549 LNPKQ9C0E8 428 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 CDH23Q9H251 3354 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 A1CFQ9NQ94 594 aaKnown RBP8.33□□□□□ -1.08
HDAC3-207ENST00000475549 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.33□□□□□ -1.08
HDAC3-207ENST00000475549 ZHX1Q9UKY1 873 aaPredicted RBP8.33□□□□□ -1.08
HDAC3-207ENST00000475549 FAM184BQ9ULE4 1060 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 PRR12Q9ULL5 1215 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 CNPY2Q9Y2B0 182 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 EYSQ5T1H1 3165 aa8.33□□□□□ -1.08
HDAC3-207ENST00000475549 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.32□□□□□ -1.08
HDAC3-207ENST00000475549 TSPY2A6NKD2 308 aa8.32□□□□□ -1.08
HDAC3-207ENST00000475549 RANBP6O60518 1105 aaKnown RBP8.32□□□□□ -1.08
HDAC3-207ENST00000475549 PQBP1O60828 265 aaKnown RBP8.32□□□□□ -1.08
HDAC3-207ENST00000475549 DUSP11O75319 330 aaKnown RBP8.32□□□□□ -1.08
HDAC3-207ENST00000475549 SLC16A2P36021 539 aa8.32□□□□□ -1.08
HDAC3-207ENST00000475549 CDK7P50613 346 aa8.32□□□□□ -1.08
HDAC3-207ENST00000475549 STAT2P52630 851 aa8.32□□□□□ -1.08
HDAC3-207ENST00000475549 ACLYP53396 1101 aa8.32□□□□□ -1.08
HDAC3-207ENST00000475549 CCDC174Q6PII3 467 aa8.32□□□□□ -1.08
HDAC3-207ENST00000475549 ANKRD33Q7Z3H0 272 aa8.32□□□□□ -1.08
HDAC3-207ENST00000475549 RNF180Q86T96 592 aa8.32□□□□□ -1.08
HDAC3-207ENST00000475549 CHURC1Q8WUH1 139 aa8.32□□□□□ -1.08
HDAC3-207ENST00000475549 YTHDC1Q96MU7 727 aaKnown RBP8.32□□□□□ -1.08
HDAC3-207ENST00000475549 TRERF1Q96PN7 1200 aa8.32□□□□□ -1.08
HDAC3-207ENST00000475549 TMEM47Q9BQJ4 181 aa8.32□□□□□ -1.08
HDAC3-207ENST00000475549 TSEN34Q9BSV6 310 aaKnown RBP8.32□□□□□ -1.08
HDAC3-207ENST00000475549 ABHD16BQ9H3Z7 469 aa8.32□□□□□ -1.08
HDAC3-207ENST00000475549 PRDM5Q9NQX1 630 aaPredicted RBP8.32□□□□□ -1.08
HDAC3-207ENST00000475549 PDGFCQ9NRA1 345 aa8.32□□□□□ -1.08
HDAC3-207ENST00000475549 TCP11L1Q9NUJ3 509 aa8.32□□□□□ -1.08
HDAC3-207ENST00000475549 FBXO40Q9UH90 709 aa8.32□□□□□ -1.08
HDAC3-207ENST00000475549 UNC80Q8N2C7 3258 aa8.32□□□□□ -1.08
HDAC3-207ENST00000475549 VCANP13611 3396 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 KIAA0355O15063 1070 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 CLTBP09497 229 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 FDX1P10109 184 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 SDSP20132 328 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 CST5P28325 142 aaPredicted RBP8.31□□□□□ -1.08
HDAC3-207ENST00000475549 GJA9P57773 515 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 HAND2P61296 217 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 NKX3-2P78367 333 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 NUCB1Q02818 461 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 FAM109BQ6ICB4 259 aaPredicted RBP8.31□□□□□ -1.08
HDAC3-207ENST00000475549 TAPT1Q6NXT6 567 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 BTNL9Q6UXG8 535 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 C16orf59Q7L2K0 433 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 FAM160B2Q86V87 743 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 CHD1LQ86WJ1 897 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 TBC1D10CQ8IV04 446 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 SLC17A8Q8NDX2 589 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 EXOC6Q8TAG9 804 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 TOX2Q96NM4 488 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 GUCD1Q96NT3 240 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 UPF3AQ9H1J1 476 aaKnown RBP8.31□□□□□ -1.08
HDAC3-207ENST00000475549 ACAD9Q9H845 621 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 RNF146Q9NTX7 359 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 CYP39A1Q9NYL5 469 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 PRKAG2Q9UGJ0 569 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 MTMR7Q9Y216 660 aa8.31□□□□□ -1.08
HDAC3-207ENST00000475549 GNEQ9Y223 722 aaKnown RBP8.31□□□□□ -1.08
HDAC3-207ENST00000475549 CTDP1Q9Y5B0 961 aaPredicted RBP8.31□□□□□ -1.08
HDAC3-207ENST00000475549 ICAM1P05362 532 aa8.3□□□□□ -1.08
HDAC3-207ENST00000475549 ASGR1P07306 291 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms