RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 SLC4A3P48751 1232 aa15.07■□□□□ 0
SKA3-206ENST00000475251 CCDC144BQ3MJ40 725 aa15.07■□□□□ 0
SKA3-206ENST00000475251 SBK1Q52WX2 424 aa15.07■□□□□ 0
SKA3-206ENST00000475251 GIMAP6Q6P9H5 292 aa15.07■□□□□ 0
SKA3-206ENST00000475251 FAM126BQ8IXS8 530 aa15.07■□□□□ 0
SKA3-206ENST00000475251 CPXCR1Q8N123 301 aa15.07■□□□□ 0
SKA3-206ENST00000475251 NUP88Q99567 741 aaPredicted RBP15.07■□□□□ 0
SKA3-206ENST00000475251 RIPK3Q9Y572 518 aa15.07■□□□□ 0
SKA3-206ENST00000475251 MYH7P12883 1935 aa15.07■□□□□ 0
SKA3-206ENST00000475251 GREB1LQ9C091 1923 aaPredicted RBP15.07■□□□□ 0
SKA3-206ENST00000475251 MYADML2A6NDP7 307 aa15.06■□□□□ 0
SKA3-206ENST00000475251 SMIM22K7EJ46 135 aa15.06■□□□□ 0
SKA3-206ENST00000475251 CABYRO75952 493 aa15.06■□□□□ 0
SKA3-206ENST00000475251 MRPS5P82675 430 aaKnown RBP15.06■□□□□ 0
SKA3-206ENST00000475251 SLFNL1Q499Z3 407 aa15.06■□□□□ 0
SKA3-206ENST00000475251 ZNF365Q70YC5 407 aa15.06■□□□□ 0
SKA3-206ENST00000475251 C16orf59Q7L2K0 433 aa15.06■□□□□ 0
SKA3-206ENST00000475251 ARMCX2Q7L311 632 aa15.06■□□□□ 0
SKA3-206ENST00000475251 PANK1Q8TE04 598 aa15.06■□□□□ 0
SKA3-206ENST00000475251 PPM1EQ8WY54 764 aa15.06■□□□□ 0
SKA3-206ENST00000475251 ASB2Q96Q27 587 aa15.06■□□□□ 0
SKA3-206ENST00000475251 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.06■□□□□ 0
SKA3-206ENST00000475251 PPP1R12CQ9BZL4 782 aa15.06■□□□□ 0
SKA3-206ENST00000475251 TSPYL2Q9H2G4 693 aaPredicted RBP15.06■□□□□ 0
SKA3-206ENST00000475251 PRDM12Q9H4Q4 367 aa15.06■□□□□ 0
SKA3-206ENST00000475251 SLC38A10Q9HBR0 1119 aa15.06■□□□□ 0
SKA3-206ENST00000475251 IL23AQ9NPF7 189 aa15.06■□□□□ 0
SKA3-206ENST00000475251 FEM1BQ9UK73 627 aa15.06■□□□□ 0
SKA3-206ENST00000475251 DDX19BQ9UMR2 479 aa15.06■□□□□ 0
SKA3-206ENST00000475251 RASA1P20936 1047 aa15.05■□□□□ -0
SKA3-206ENST00000475251 PBX2P40425 430 aa15.05■□□□□ -0
SKA3-206ENST00000475251 NKX3-2P78367 333 aa15.05■□□□□ -0
SKA3-206ENST00000475251 HERVK_113Q902F9 699 aa15.05■□□□□ -0
SKA3-206ENST00000475251 KIFC2Q96AC6 838 aa15.05■□□□□ -0
SKA3-206ENST00000475251 PUS7LQ9H0K6 701 aaKnown RBP15.05■□□□□ -0
SKA3-206ENST00000475251 SLC28A3Q9HAS3 691 aa15.05■□□□□ -0
SKA3-206ENST00000475251 RAVER2Q9HCJ3 691 aaKnown RBP15.05■□□□□ -0
SKA3-206ENST00000475251 GRXCR1A8MXD5 290 aa15.04■□□□□ -0
SKA3-206ENST00000475251 ZEB2O60315 1214 aa15.04■□□□□ -0
SKA3-206ENST00000475251 FGBP02675 491 aa15.04■□□□□ -0
SKA3-206ENST00000475251 ACRP10323 421 aa15.04■□□□□ -0
SKA3-206ENST00000475251 IGFBP4P22692 258 aa15.04■□□□□ -0
SKA3-206ENST00000475251 HNRNPUQ00839 825 aaKnown RBP eCLIP15.04■□□□□ -0
SKA3-206ENST00000475251 NOL8Q76FK4 1167 aaKnown RBP15.04■□□□□ -0
SKA3-206ENST00000475251 CCDC144CPQ8IYA2 1237 aa15.04■□□□□ -0
SKA3-206ENST00000475251 ZNF444Q8N0Y2 327 aaPredicted RBP15.04■□□□□ -0
SKA3-206ENST00000475251 HIPK3Q9H422 1215 aa15.04■□□□□ -0
SKA3-206ENST00000475251 CLIP2Q9UDT6 1046 aa15.04■□□□□ -0
SKA3-206ENST00000475251 ASB14A6NK59 587 aa15.03■□□□□ -0
SKA3-206ENST00000475251 MINDY4BA8MYZ0 360 aa15.03■□□□□ -0
SKA3-206ENST00000475251 ADCY6O43306 1168 aa15.03■□□□□ -0
SKA3-206ENST00000475251 CD4P01730 458 aa15.03■□□□□ -0
SKA3-206ENST00000475251 GNAT2P19087 354 aa15.03■□□□□ -0
SKA3-206ENST00000475251 TNFAIP2Q03169 654 aa15.03■□□□□ -0
SKA3-206ENST00000475251 GMCL1P1Q8NEA9 526 aa15.03■□□□□ -0
SKA3-206ENST00000475251 ADAMTS19Q8TE59 1207 aa15.03■□□□□ -0
SKA3-206ENST00000475251 MKL1Q969V6 931 aa15.03■□□□□ -0
SKA3-206ENST00000475251 STRBPQ96SI9 672 aaKnown RBP15.03■□□□□ -0
SKA3-206ENST00000475251 ACAD9Q9H845 621 aa15.03■□□□□ -0
SKA3-206ENST00000475251 TTLL1O95922 423 aa15.02■□□□□ -0
SKA3-206ENST00000475251 CYP2C18P33260 490 aa15.02■□□□□ -0
SKA3-206ENST00000475251 RPUSD2Q8IZ73 545 aaKnown RBP15.02■□□□□ -0
SKA3-206ENST00000475251 FGD4Q96M96 766 aa15.02■□□□□ -0
SKA3-206ENST00000475251 UHRF1Q96T88 793 aaPredicted RBP15.02■□□□□ -0
SKA3-206ENST00000475251 LRRCC1Q9C099 1032 aa15.02■□□□□ -0
SKA3-206ENST00000475251 AP5M1Q9H0R1 490 aa15.02■□□□□ -0
SKA3-206ENST00000475251 MYH4Q9Y623 1939 aa15.02□□□□□ -0.01
SKA3-206ENST00000475251 TTC28Q96AY4 2481 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 IGKV6D-41A0A0C4DH26 115 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 GSG1L2A8MUP6 293 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 CHGBP05060 677 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 BMP3P12645 472 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 TDO2P48775 406 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 STAT2P52630 851 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 IRX5P78411 483 aaPredicted RBP15.01□□□□□ -0.01
SKA3-206ENST00000475251 ITGA7Q13683 1181 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 CCDC85BQ15834 202 aaPredicted RBP15.01□□□□□ -0.01
SKA3-206ENST00000475251 FSCN1Q16658 493 aaKnown RBP15.01□□□□□ -0.01
SKA3-206ENST00000475251 AAK1Q2M2I8 961 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 TKFCQ3LXA3 575 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 PPP4R3BQ5MIZ7 849 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 TLK2Q86UE8 772 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 FAM160B2Q86V87 743 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 SIRT2Q8IXJ6 389 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 STK11IPQ8N1F8 1099 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 FAM133AQ8N9E0 248 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 SLC43A3Q8NBI5 491 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 CHURC1Q8WUH1 139 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 KATNBL1Q9H079 304 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 NKX2-4Q9H2Z4 354 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 HOMER2Q9NSB8 354 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 ZBTB40Q9NUA8 1239 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 MTMR4Q9NYA4 1195 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 COG6Q9Y2V7 657 aa15.01□□□□□ -0.01
SKA3-206ENST00000475251 MCM3APO60318 1980 aa15□□□□□ -0.01
SKA3-206ENST00000475251 CTAGE5O15320 804 aa15□□□□□ -0.01
SKA3-206ENST00000475251 ZFYP08048 801 aaPredicted RBP15□□□□□ -0.01
SKA3-206ENST00000475251 SLC3A2P08195 630 aaKnown RBP15□□□□□ -0.01
SKA3-206ENST00000475251 BEX3Q00994 111 aa15□□□□□ -0.01
SKA3-206ENST00000475251 ADGRE1Q14246 886 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms