RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 SYNPO2Q9UMS6 1093 aa11.13□□□□□ -0.63
USP39-214ENST00000474572 PCDHAC2Q9Y5I4 1007 aa11.13□□□□□ -0.63
USP39-214ENST00000474572 PNMA6FA0A0J9YX94 578 aa11.12□□□□□ -0.63
USP39-214ENST00000474572 PPP1R3GB7ZBB8 358 aa11.12□□□□□ -0.63
USP39-214ENST00000474572 EDIL3O43854 480 aa11.12□□□□□ -0.63
USP39-214ENST00000474572 MYL1P05976 194 aa11.12□□□□□ -0.63
USP39-214ENST00000474572 OR52Z1P0C646 297 aa11.12□□□□□ -0.63
USP39-214ENST00000474572 CD44P16070 742 aaKnown RBP11.12□□□□□ -0.63
USP39-214ENST00000474572 AFMP43652 599 aa11.12□□□□□ -0.63
USP39-214ENST00000474572 ARID5BQ14865 1188 aa11.12□□□□□ -0.63
USP39-214ENST00000474572 CCDC93Q567U6 631 aa11.12□□□□□ -0.63
USP39-214ENST00000474572 NAALADL2Q58DX5 795 aa11.12□□□□□ -0.63
USP39-214ENST00000474572 HOMER1Q86YM7 354 aa11.12□□□□□ -0.63
USP39-214ENST00000474572 CLEC10AQ8IUN9 316 aa11.12□□□□□ -0.63
USP39-214ENST00000474572 VSTM4Q8IW00 320 aa11.12□□□□□ -0.63
USP39-214ENST00000474572 SLC16A10Q8TF71 515 aa11.12□□□□□ -0.63
USP39-214ENST00000474572 PRIMPOLQ96LW4 560 aa11.12□□□□□ -0.63
USP39-214ENST00000474572 VPS33BQ9H267 617 aa11.12□□□□□ -0.63
USP39-214ENST00000474572 CUEDC2Q9H467 287 aa11.12□□□□□ -0.63
USP39-214ENST00000474572 INTS13Q9NVM9 706 aa11.12□□□□□ -0.63
USP39-214ENST00000474572 MTMR7Q9Y216 660 aa11.12□□□□□ -0.63
USP39-214ENST00000474572 R3HCC1Q9Y3T6 440 aaKnown RBP11.12□□□□□ -0.63
USP39-214ENST00000474572 NFE2L3Q9Y4A8 694 aa11.12□□□□□ -0.63
USP39-214ENST00000474572 FER1L6Q2WGJ9 1857 aa11.12□□□□□ -0.63
USP39-214ENST00000474572 MYH7BA7E2Y1 1941 aa11.11□□□□□ -0.63
USP39-214ENST00000474572 PPIP5K2O43314 1243 aa11.11□□□□□ -0.63
USP39-214ENST00000474572 PPP1R11O60927 126 aaPredicted RBP11.11□□□□□ -0.63
USP39-214ENST00000474572 KCNA3P22001 575 aa11.11□□□□□ -0.63
USP39-214ENST00000474572 UBASH3AP57075 661 aa11.11□□□□□ -0.63
USP39-214ENST00000474572 TBX2Q13207 712 aaPredicted RBP11.11□□□□□ -0.63
USP39-214ENST00000474572 KCNB1Q14721 858 aa11.11□□□□□ -0.63
USP39-214ENST00000474572 CDKAL1Q5VV42 579 aa11.11□□□□□ -0.63
USP39-214ENST00000474572 SPATA1Q5VX52 437 aa11.11□□□□□ -0.63
USP39-214ENST00000474572 ARMCX5Q6P1M9 558 aa11.11□□□□□ -0.63
USP39-214ENST00000474572 TMEM179Q6ZVK1 233 aa11.11□□□□□ -0.63
USP39-214ENST00000474572 APTXQ7Z2E3 356 aaKnown RBP11.11□□□□□ -0.63
USP39-214ENST00000474572 TMC6Q7Z403 805 aa11.11□□□□□ -0.63
USP39-214ENST00000474572 FILIP1Q7Z7B0 1213 aa11.11□□□□□ -0.63
USP39-214ENST00000474572 ADGRF4Q8IZF3 695 aa11.11□□□□□ -0.63
USP39-214ENST00000474572 REXO1Q8N1G1 1221 aaKnown RBP11.11□□□□□ -0.63
USP39-214ENST00000474572 TBCKQ8TEA7 893 aa11.11□□□□□ -0.63
USP39-214ENST00000474572 MTMR9Q96QG7 549 aa11.11□□□□□ -0.63
USP39-214ENST00000474572 GMLQ99445 158 aa11.11□□□□□ -0.63
USP39-214ENST00000474572 KANSL2Q9H9L4 492 aa11.11□□□□□ -0.63
USP39-214ENST00000474572 RIC8AQ9NPQ8 531 aa11.11□□□□□ -0.63
USP39-214ENST00000474572 RMND1Q9NWS8 449 aa11.11□□□□□ -0.63
USP39-214ENST00000474572 SYNRGQ9UMZ2 1314 aa11.1□□□□□ -0.63
USP39-214ENST00000474572 ZBTB5O15062 677 aa11.1□□□□□ -0.63
USP39-214ENST00000474572 SERPINC1P01008 464 aa11.1□□□□□ -0.63
USP39-214ENST00000474572 VIL1P09327 827 aaKnown RBP11.1□□□□□ -0.63
USP39-214ENST00000474572 CASP1P29466 404 aa11.1□□□□□ -0.63
USP39-214ENST00000474572 FXR2P51116 673 aaKnown RBP eCLIP11.1□□□□□ -0.63
USP39-214ENST00000474572 ADCY7P51828 1080 aa11.1□□□□□ -0.63
USP39-214ENST00000474572 EIF6P56537 245 aaKnown RBP11.1□□□□□ -0.63
USP39-214ENST00000474572 KARSQ15046 597 aaKnown RBP11.1□□□□□ -0.63
USP39-214ENST00000474572 CFAP100Q494V2 611 aa11.1□□□□□ -0.63
USP39-214ENST00000474572 CERKLQ49MI3 558 aaPredicted RBP11.1□□□□□ -0.63
USP39-214ENST00000474572 ZNF658Q5TYW1 1059 aaPredicted RBP11.1□□□□□ -0.63
USP39-214ENST00000474572 RSBN1LQ6PCB5 846 aaPredicted RBP11.1□□□□□ -0.63
USP39-214ENST00000474572 SIAH1Q8IUQ4 282 aa11.1□□□□□ -0.63
USP39-214ENST00000474572 RTKN2Q8IZC4 609 aa11.1□□□□□ -0.63
USP39-214ENST00000474572 TTLL6Q8N841 843 aa11.1□□□□□ -0.63
USP39-214ENST00000474572 IGSF22Q8N9C0 903 aa11.1□□□□□ -0.63
USP39-214ENST00000474572 GMCL1P1Q8NEA9 526 aa11.1□□□□□ -0.63
USP39-214ENST00000474572 COA7Q96BR5 231 aa11.1□□□□□ -0.63
USP39-214ENST00000474572 TMX1Q9H3N1 280 aa11.1□□□□□ -0.63
USP39-214ENST00000474572 VAT1LQ9HCJ6 419 aa11.1□□□□□ -0.63
USP39-214ENST00000474572 GPCPD1Q9NPB8 672 aa11.1□□□□□ -0.63
USP39-214ENST00000474572 KBTBD4Q9NVX7 518 aa11.1□□□□□ -0.63
USP39-214ENST00000474572 A0A1B0GTH6 734 aa11.09□□□□□ -0.63
USP39-214ENST00000474572 C21orf2O43822 256 aa11.09□□□□□ -0.63
USP39-214ENST00000474572 KLRC4O43908 158 aa11.09□□□□□ -0.63
USP39-214ENST00000474572 CCNT1O60563 726 aaKnown RBP11.09□□□□□ -0.63
USP39-214ENST00000474572 RPN1P04843 607 aaKnown RBP11.09□□□□□ -0.63
USP39-214ENST00000474572 SLURP2P0DP57 97 aa11.09□□□□□ -0.63
USP39-214ENST00000474572 SKILP12757 684 aa11.09□□□□□ -0.63
USP39-214ENST00000474572 EEF2P13639 858 aaKnown RBP11.09□□□□□ -0.63
USP39-214ENST00000474572 GTF2F1P35269 517 aaKnown RBP eCLIP11.09□□□□□ -0.63
USP39-214ENST00000474572 STAT6P42226 847 aa11.09□□□□□ -0.63
USP39-214ENST00000474572 BAG6P46379 1132 aa11.09□□□□□ -0.63
USP39-214ENST00000474572 CACNB3P54284 484 aa11.09□□□□□ -0.63
USP39-214ENST00000474572 LETM2Q2VYF4 491 aa11.09□□□□□ -0.63
USP39-214ENST00000474572 RRAGBQ5VZM2 374 aa11.09□□□□□ -0.63
USP39-214ENST00000474572 PPP4R3AQ6IN85 833 aa11.09□□□□□ -0.63
USP39-214ENST00000474572 TTBK2Q6IQ55 1244 aa11.09□□□□□ -0.63
USP39-214ENST00000474572 TRMT44Q8IYL2 757 aaKnown RBP11.09□□□□□ -0.63
USP39-214ENST00000474572 MTMR14Q8NCE2 650 aa11.09□□□□□ -0.63
USP39-214ENST00000474572 CCDC112Q8NEF3 446 aa11.09□□□□□ -0.63
USP39-214ENST00000474572 MYRIPQ8NFW9 859 aa11.09□□□□□ -0.63
USP39-214ENST00000474572 LRRC15Q8TF66 581 aa11.09□□□□□ -0.63
USP39-214ENST00000474572 GMCL1Q96IK5 515 aa11.09□□□□□ -0.63
USP39-214ENST00000474572 PRMT6Q96LA8 375 aaPredicted RBP11.09□□□□□ -0.63
USP39-214ENST00000474572 GLT8D2Q9H1C3 349 aa11.09□□□□□ -0.63
USP39-214ENST00000474572 TDRD3Q9H7E2 651 aaKnown RBP11.09□□□□□ -0.63
USP39-214ENST00000474572 SAMSN1Q9NSI8 373 aaKnown RBP11.09□□□□□ -0.63
USP39-214ENST00000474572 TMEM260Q9NX78 707 aa11.09□□□□□ -0.63
USP39-214ENST00000474572 BIN2Q9UBW5 565 aaPredicted RBP11.09□□□□□ -0.63
USP39-214ENST00000474572 ATF5Q9Y2D1 282 aaPredicted RBP11.09□□□□□ -0.63
USP39-214ENST00000474572 ATAD5Q96QE3 1844 aa11.08□□□□□ -0.64
USP39-214ENST00000474572 PSDA5PKW4 1024 aaPredicted RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms