RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 PLA2G1BP04054 148 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-212ENST00000474059 CAP1Q01518 475 aa6.52□□□□□ -1.37
CCDC88A-212ENST00000474059 LAPTM5Q13571 262 aa6.52□□□□□ -1.37
CCDC88A-212ENST00000474059 CWF19L2Q2TBE0 894 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-212ENST00000474059 DIEXFQ68CQ4 756 aaKnown RBP6.52□□□□□ -1.37
CCDC88A-212ENST00000474059 NLRC3Q7RTR2 1065 aa6.52□□□□□ -1.37
CCDC88A-212ENST00000474059 FRMD5Q7Z6J6 570 aa6.52□□□□□ -1.37
CCDC88A-212ENST00000474059 NUP43Q8NFH3 380 aa6.52□□□□□ -1.37
CCDC88A-212ENST00000474059 ADAMTS1Q9UHI8 967 aa6.52□□□□□ -1.37
CCDC88A-212ENST00000474059 A0A1W2PQ45 241 aaPredicted RBP6.51□□□□□ -1.37
CCDC88A-212ENST00000474059 A0A1W2PQY0 241 aa6.51□□□□□ -1.37
CCDC88A-212ENST00000474059 MEIS3P2A8K0S8 358 aa6.51□□□□□ -1.37
CCDC88A-212ENST00000474059 CLEC3AO75596 197 aa6.51□□□□□ -1.37
CCDC88A-212ENST00000474059 VAV1P15498 845 aa6.51□□□□□ -1.37
CCDC88A-212ENST00000474059 SLURP1P55000 103 aa6.51□□□□□ -1.37
CCDC88A-212ENST00000474059 CYP4F8P98187 520 aa6.51□□□□□ -1.37
CCDC88A-212ENST00000474059 RTP5Q14D33 572 aa6.51□□□□□ -1.37
CCDC88A-212ENST00000474059 OLFML2BQ68BL8 750 aa6.51□□□□□ -1.37
CCDC88A-212ENST00000474059 ROBO2Q9HCK4 1378 aa6.51□□□□□ -1.37
CCDC88A-212ENST00000474059 TNFRSF10CO14798 259 aa6.5□□□□□ -1.37
CCDC88A-212ENST00000474059 NME1P15531 152 aaKnown RBP6.5□□□□□ -1.37
CCDC88A-212ENST00000474059 EIF4A3P38919 411 aaKnown RBP6.5□□□□□ -1.37
CCDC88A-212ENST00000474059 CCNFP41002 786 aa6.5□□□□□ -1.37
CCDC88A-212ENST00000474059 ZNF200P98182 395 aaPredicted RBP6.5□□□□□ -1.37
CCDC88A-212ENST00000474059 DLX2Q07687 328 aaPredicted RBP6.5□□□□□ -1.37
CCDC88A-212ENST00000474059 RAD51AP2Q09MP3 1159 aa6.5□□□□□ -1.37
CCDC88A-212ENST00000474059 ADGRG2Q8IZP9 1017 aa6.5□□□□□ -1.37
CCDC88A-212ENST00000474059 SLC6A18Q96N87 628 aa6.5□□□□□ -1.37
CCDC88A-212ENST00000474059 SLC9A7Q96T83 725 aa6.5□□□□□ -1.37
CCDC88A-212ENST00000474059 CDADC1Q9BWV3 514 aa6.5□□□□□ -1.37
CCDC88A-212ENST00000474059 UBP1Q9NZI7 540 aa6.5□□□□□ -1.37
CCDC88A-212ENST00000474059 A0A1B0GTL3 188 aa6.49□□□□□ -1.37
CCDC88A-212ENST00000474059 C9IYK1 514 aa6.49□□□□□ -1.37
CCDC88A-212ENST00000474059 MAPKAPK2P49137 400 aa6.49□□□□□ -1.37
CCDC88A-212ENST00000474059 ZNF296Q8WUU4 475 aaPredicted RBP6.49□□□□□ -1.37
CCDC88A-212ENST00000474059 SLC12A9Q9BXP2 914 aa6.49□□□□□ -1.37
CCDC88A-212ENST00000474059 VTI1BQ9UEU0 232 aa6.49□□□□□ -1.37
CCDC88A-212ENST00000474059 SUPT16HQ9Y5B9 1047 aaKnown RBP6.49□□□□□ -1.37
CCDC88A-212ENST00000474059 ACRP10323 421 aa6.48□□□□□ -1.37
CCDC88A-212ENST00000474059 ATF2P15336 505 aa6.48□□□□□ -1.37
CCDC88A-212ENST00000474059 ARL4AP40617 200 aa6.48□□□□□ -1.37
CCDC88A-212ENST00000474059 CHMP4BP1P59074 171 aa6.48□□□□□ -1.37
CCDC88A-212ENST00000474059 HTRA3P83110 453 aa6.48□□□□□ -1.37
CCDC88A-212ENST00000474059 AUHQ13825 339 aaKnown RBP6.48□□□□□ -1.37
CCDC88A-212ENST00000474059 BDH2Q9BUT1 245 aa6.48□□□□□ -1.37
CCDC88A-212ENST00000474059 PRR13Q9NZ81 148 aa6.48□□□□□ -1.37
CCDC88A-212ENST00000474059 TIMELESSQ9UNS1 1208 aa6.48□□□□□ -1.37
CCDC88A-212ENST00000474059 DBHP09172 617 aa6.47□□□□□ -1.37
CCDC88A-212ENST00000474059 MLECQ14165 292 aa6.47□□□□□ -1.37
CCDC88A-212ENST00000474059 ZFYVE27Q5T4F4 411 aa6.47□□□□□ -1.37
CCDC88A-212ENST00000474059 GK5Q6ZS86 529 aa6.47□□□□□ -1.37
CCDC88A-212ENST00000474059 REXO1Q8N1G1 1221 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-212ENST00000474059 FNIP1Q8TF40 1166 aa6.47□□□□□ -1.37
CCDC88A-212ENST00000474059 SRRTQ9BXP5 876 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-212ENST00000474059 MKRN2Q9H000 416 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-212ENST00000474059 PCDHB12Q9Y5F1 795 aa6.47□□□□□ -1.37
CCDC88A-212ENST00000474059 SPATS1Q496A3 300 aa6.46□□□□□ -1.38
CCDC88A-212ENST00000474059 SEZ6Q53EL9 994 aa6.46□□□□□ -1.38
CCDC88A-212ENST00000474059 HHIPL2Q6UWX4 724 aa6.46□□□□□ -1.38
CCDC88A-212ENST00000474059 LIPIQ6XZB0 460 aa6.46□□□□□ -1.38
CCDC88A-212ENST00000474059 PPFIBP1Q86W92 1011 aa6.46□□□□□ -1.38
CCDC88A-212ENST00000474059 SRGAP3O43295 1099 aa6.45□□□□□ -1.38
CCDC88A-212ENST00000474059 KCNC1P48547 511 aa6.45□□□□□ -1.38
CCDC88A-212ENST00000474059 TMEM62Q0P6H9 643 aa6.45□□□□□ -1.38
CCDC88A-212ENST00000474059 ZC3H14Q6PJT7 736 aaKnown RBP6.45□□□□□ -1.38
CCDC88A-212ENST00000474059 DUSP10Q9Y6W6 482 aa6.45□□□□□ -1.38
CCDC88A-212ENST00000474059 H0Y8X5 98 aa6.44□□□□□ -1.38
CCDC88A-212ENST00000474059 FGF10O15520 208 aaPredicted RBP6.44□□□□□ -1.38
CCDC88A-212ENST00000474059 ENDOUP21128 410 aaKnown RBP6.44□□□□□ -1.38
CCDC88A-212ENST00000474059 MC3RP41968 323 aa6.44□□□□□ -1.38
CCDC88A-212ENST00000474059 NR1I3Q14994 352 aa6.44□□□□□ -1.38
CCDC88A-212ENST00000474059 SAPCD2Q86UD0 394 aa6.44□□□□□ -1.38
CCDC88A-212ENST00000474059 LSRQ86X29 649 aaPredicted RBP6.44□□□□□ -1.38
CCDC88A-212ENST00000474059 SLITRK4Q8IW52 837 aa6.44□□□□□ -1.38
CCDC88A-212ENST00000474059 ZNF526Q8TF50 670 aaPredicted RBP6.44□□□□□ -1.38
CCDC88A-212ENST00000474059 SPATA25Q9BR10 227 aa6.44□□□□□ -1.38
CCDC88A-212ENST00000474059 TMPRSS5Q9H3S3 457 aa6.44□□□□□ -1.38
CCDC88A-212ENST00000474059 SUCOQ9UBS9 1254 aaKnown RBP6.44□□□□□ -1.38
CCDC88A-212ENST00000474059 FBXL21Q9UKT6 434 aa6.44□□□□□ -1.38
CCDC88A-212ENST00000474059 PATL2C9JE40 543 aaKnown RBP6.43□□□□□ -1.38
CCDC88A-212ENST00000474059 CYBBP04839 570 aa6.43□□□□□ -1.38
CCDC88A-212ENST00000474059 GSNP06396 782 aa6.43□□□□□ -1.38
CCDC88A-212ENST00000474059 PLP2Q04941 152 aa6.43□□□□□ -1.38
CCDC88A-212ENST00000474059 C7orf61Q8IZ16 206 aa6.43□□□□□ -1.38
CCDC88A-212ENST00000474059 EAF1Q96JC9 268 aaPredicted RBP6.43□□□□□ -1.38
CCDC88A-212ENST00000474059 FBLN5Q9UBX5 448 aa6.43□□□□□ -1.38
CCDC88A-212ENST00000474059 SH3D21A4FU49 640 aa6.42□□□□□ -1.38
CCDC88A-212ENST00000474059 GSTM1P09488 218 aa6.42□□□□□ -1.38
CCDC88A-212ENST00000474059 ZNF445P59923 1031 aa6.42□□□□□ -1.38
CCDC88A-212ENST00000474059 FOXO4P98177 505 aa6.42□□□□□ -1.38
CCDC88A-212ENST00000474059 ZXDCQ2QGD7 858 aaPredicted RBP6.42□□□□□ -1.38
CCDC88A-212ENST00000474059 PAQR3Q6TCH7 311 aa6.42□□□□□ -1.38
CCDC88A-212ENST00000474059 KRTAP3-1Q9BYR8 98 aa6.42□□□□□ -1.38
CCDC88A-212ENST00000474059 MRS2Q9HD23 443 aa6.42□□□□□ -1.38
CCDC88A-212ENST00000474059 SUSD2Q9UGT4 822 aa6.42□□□□□ -1.38
CCDC88A-212ENST00000474059 FAM86C2PA6NEL3 165 aa6.41□□□□□ -1.38
CCDC88A-212ENST00000474059 INSRRP14616 1297 aa6.41□□□□□ -1.38
CCDC88A-212ENST00000474059 PRR5P85299 388 aa6.41□□□□□ -1.38
CCDC88A-212ENST00000474059 APOBRQ0VD83 1088 aa6.41□□□□□ -1.38
CCDC88A-212ENST00000474059 MRPL58Q14197 206 aaKnown RBP6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms