RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 SGSM2O43147 1006 aa21.09■□□□□ 0.97
UPF3A-203ENST00000474056 TAL1P17542 331 aaPredicted RBP21.09■□□□□ 0.97
UPF3A-203ENST00000474056 NT5C2P49902 561 aa21.09■□□□□ 0.97
UPF3A-203ENST00000474056 IQCA1Q86XH1 822 aa21.09■□□□□ 0.97
UPF3A-203ENST00000474056 ANKRD35Q8N283 1001 aa21.09■□□□□ 0.97
UPF3A-203ENST00000474056 ACAD9Q9H845 621 aa21.09■□□□□ 0.97
UPF3A-203ENST00000474056 GPCPD1Q9NPB8 672 aa21.09■□□□□ 0.97
UPF3A-203ENST00000474056 RNF146Q9NTX7 359 aa21.09■□□□□ 0.97
UPF3A-203ENST00000474056 ZSWIM5Q9P217 1185 aa21.09■□□□□ 0.97
UPF3A-203ENST00000474056 EVI5O60447 810 aa21.08■□□□□ 0.97
UPF3A-203ENST00000474056 SNHG28P0DPA3 235 aa21.08■□□□□ 0.97
UPF3A-203ENST00000474056 COL6A1P12109 1028 aa21.08■□□□□ 0.97
UPF3A-203ENST00000474056 ALAS1P13196 640 aa21.08■□□□□ 0.97
UPF3A-203ENST00000474056 SYDE2Q5VT97 1194 aa21.08■□□□□ 0.97
UPF3A-203ENST00000474056 CENPQQ7L2Z9 268 aaPredicted RBP21.08■□□□□ 0.97
UPF3A-203ENST00000474056 DGKHQ86XP1 1220 aa21.08■□□□□ 0.97
UPF3A-203ENST00000474056 FGD4Q96M96 766 aa21.08■□□□□ 0.97
UPF3A-203ENST00000474056 RANBP17Q9H2T7 1088 aaKnown RBP21.08■□□□□ 0.97
UPF3A-203ENST00000474056 LRRC37A2A6NM11 1700 aa21.07■□□□□ 0.96
UPF3A-203ENST00000474056 ZNF543Q08ER8 600 aa21.07■□□□□ 0.96
UPF3A-203ENST00000474056 TKFCQ3LXA3 575 aa21.07■□□□□ 0.96
UPF3A-203ENST00000474056 TRERF1Q96PN7 1200 aa21.07■□□□□ 0.96
UPF3A-203ENST00000474056 ZSCAN10Q96SZ4 725 aaPredicted RBP21.07■□□□□ 0.96
UPF3A-203ENST00000474056 KRT23Q9C075 422 aa21.07■□□□□ 0.96
UPF3A-203ENST00000474056 A1CFQ9NQ94 594 aaKnown RBP21.07■□□□□ 0.96
UPF3A-203ENST00000474056 NRBP1Q9UHY1 535 aa21.07■□□□□ 0.96
UPF3A-203ENST00000474056 TNKSO95271 1327 aa21.06■□□□□ 0.96
UPF3A-203ENST00000474056 CYP21A2P08686 494 aa21.06■□□□□ 0.96
UPF3A-203ENST00000474056 ZNF865P0CJ78 1059 aaPredicted RBP21.06■□□□□ 0.96
UPF3A-203ENST00000474056 CCDC178Q5BJE1 867 aa21.06■□□□□ 0.96
UPF3A-203ENST00000474056 MUM1L1Q5H9M0 696 aa21.06■□□□□ 0.96
UPF3A-203ENST00000474056 MSL3Q8N5Y2 521 aaKnown RBP21.06■□□□□ 0.96
UPF3A-203ENST00000474056 ENAHQ8N8S7 591 aaPredicted RBP21.06■□□□□ 0.96
UPF3A-203ENST00000474056 PNMA1Q8ND90 353 aa21.06■□□□□ 0.96
UPF3A-203ENST00000474056 CNNM2Q9H8M5 875 aa21.06■□□□□ 0.96
UPF3A-203ENST00000474056 CCPG1Q9ULG6 757 aa21.06■□□□□ 0.96
UPF3A-203ENST00000474056 NR2E3Q9Y5X4 410 aa21.06■□□□□ 0.96
UPF3A-203ENST00000474056 SYNGAP1Q96PV0 1343 aa21.05■□□□□ 0.96
UPF3A-203ENST00000474056 SNAI1O95863 264 aaPredicted RBP21.05■□□□□ 0.96
UPF3A-203ENST00000474056 ICAM1P05362 532 aa21.05■□□□□ 0.96
UPF3A-203ENST00000474056 GJC2Q5T442 439 aaPredicted RBP21.05■□□□□ 0.96
UPF3A-203ENST00000474056 MAMDC4Q6UXC1 1216 aa21.05■□□□□ 0.96
UPF3A-203ENST00000474056 ZNF467Q7Z7K2 595 aaPredicted RBP21.05■□□□□ 0.96
UPF3A-203ENST00000474056 C7orf61Q8IZ16 206 aa21.05■□□□□ 0.96
UPF3A-203ENST00000474056 ANKS1AQ92625 1134 aa21.05■□□□□ 0.96
UPF3A-203ENST00000474056 TRIOBPQ9H2D6 2365 aa21.05■□□□□ 0.96
UPF3A-203ENST00000474056 DNM1LO00429 736 aa21.04■□□□□ 0.96
UPF3A-203ENST00000474056 GOLGA8HP0CJ92 632 aa21.04■□□□□ 0.96
UPF3A-203ENST00000474056 CNTN2Q02246 1040 aa21.04■□□□□ 0.96
UPF3A-203ENST00000474056 CYB5R4Q7L1T6 521 aa21.04■□□□□ 0.96
UPF3A-203ENST00000474056 KAT14Q9H8E8 782 aa21.04■□□□□ 0.96
UPF3A-203ENST00000474056 COLQQ9Y215 455 aaPredicted RBP21.04■□□□□ 0.96
UPF3A-203ENST00000474056 CNPY2Q9Y2B0 182 aa21.04■□□□□ 0.96
UPF3A-203ENST00000474056 TAF6LQ9Y6J9 622 aa21.04■□□□□ 0.96
UPF3A-203ENST00000474056 U3KPZ7 1027 aaPredicted RBP21.04■□□□□ 0.96
UPF3A-203ENST00000474056 LRRC26Q2I0M4 334 aa21.03■□□□□ 0.96
UPF3A-203ENST00000474056 HABP4Q5JVS0 413 aaKnown RBP21.03■□□□□ 0.96
UPF3A-203ENST00000474056 CHRDL2Q6WN34 429 aa21.03■□□□□ 0.96
UPF3A-203ENST00000474056 FAM133AQ8N9E0 248 aa21.03■□□□□ 0.96
UPF3A-203ENST00000474056 LENG1Q96BZ8 264 aaPredicted RBP21.03■□□□□ 0.96
UPF3A-203ENST00000474056 SENP6Q9GZR1 1112 aaPredicted RBP21.03■□□□□ 0.96
UPF3A-203ENST00000474056 CPVLQ9H3G5 476 aa21.03■□□□□ 0.96
UPF3A-203ENST00000474056 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.03■□□□□ 0.96
UPF3A-203ENST00000474056 BAZ2BQ9UIF8 2168 aaKnown RBP21.02■□□□□ 0.96
UPF3A-203ENST00000474056 POTEB2H3BUK9 544 aa21.02■□□□□ 0.96
UPF3A-203ENST00000474056 AKR1A1P14550 325 aa21.02■□□□□ 0.96
UPF3A-203ENST00000474056 LRRC41Q15345 812 aa21.02■□□□□ 0.96
UPF3A-203ENST00000474056 GPATCH4Q5T3I0 446 aaKnown RBP21.02■□□□□ 0.96
UPF3A-203ENST00000474056 ARMCX2Q7L311 632 aa21.02■□□□□ 0.96
UPF3A-203ENST00000474056 ARRDC4Q8NCT1 418 aa21.02■□□□□ 0.96
UPF3A-203ENST00000474056 MAP4K1Q92918 833 aa21.02■□□□□ 0.96
UPF3A-203ENST00000474056 UBAC1Q9BSL1 405 aa21.02■□□□□ 0.96
UPF3A-203ENST00000474056 UBA5Q9GZZ9 404 aa21.02■□□□□ 0.96
UPF3A-203ENST00000474056 ZHX1Q9UKY1 873 aaPredicted RBP21.02■□□□□ 0.96
UPF3A-203ENST00000474056 SOWAHBA6NEL2 793 aa21.01■□□□□ 0.95
UPF3A-203ENST00000474056 KBTBD13C9JR72 458 aa21.01■□□□□ 0.95
UPF3A-203ENST00000474056 MYCNP04198 464 aaPredicted RBP21.01■□□□□ 0.95
UPF3A-203ENST00000474056 RARBP10826 455 aa21.01■□□□□ 0.95
UPF3A-203ENST00000474056 SEC23AQ15436 765 aa21.01■□□□□ 0.95
UPF3A-203ENST00000474056 NSMFQ6X4W1 530 aa21.01■□□□□ 0.95
UPF3A-203ENST00000474056 STOX1Q6ZVD7 989 aa21.01■□□□□ 0.95
UPF3A-203ENST00000474056 CCDC144CPQ8IYA2 1237 aa21.01■□□□□ 0.95
UPF3A-203ENST00000474056 XPNPEP3Q9NQH7 507 aa21.01■□□□□ 0.95
UPF3A-203ENST00000474056 CYP39A1Q9NYL5 469 aa21.01■□□□□ 0.95
UPF3A-203ENST00000474056 ZMYND8Q9ULU4 1186 aaPredicted RBP21.01■□□□□ 0.95
UPF3A-203ENST00000474056 RBM8AQ9Y5S9 174 aaKnown RBP21.01■□□□□ 0.95
UPF3A-203ENST00000474056 E7EWF7 191 aa21■□□□□ 0.95
UPF3A-203ENST00000474056 NFIBO00712 420 aa21■□□□□ 0.95
UPF3A-203ENST00000474056 TRDNQ13061 729 aa21■□□□□ 0.95
UPF3A-203ENST00000474056 IFIT1BQ5T764 474 aaKnown RBP21■□□□□ 0.95
UPF3A-203ENST00000474056 ASTN1O14525 1302 aa21■□□□□ 0.95
UPF3A-203ENST00000474056 PGK1P00558 417 aa20.99■□□□□ 0.95
UPF3A-203ENST00000474056 SYN1P17600 705 aa20.99■□□□□ 0.95
UPF3A-203ENST00000474056 ATN1P54259 1190 aaPredicted RBP20.99■□□□□ 0.95
UPF3A-203ENST00000474056 ACVR2BQ13705 512 aa20.99■□□□□ 0.95
UPF3A-203ENST00000474056 BMP2KLQ5H9B9 411 aa20.99■□□□□ 0.95
UPF3A-203ENST00000474056 ESYT1Q9BSJ8 1104 aa20.99■□□□□ 0.95
UPF3A-203ENST00000474056 KATNBL1Q9H079 304 aa20.99■□□□□ 0.95
UPF3A-203ENST00000474056 LSG1Q9H089 658 aaKnown RBP20.99■□□□□ 0.95
UPF3A-203ENST00000474056 ABHD16BQ9H3Z7 469 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms