RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 COL9A3Q14050 684 aaPredicted RBP17.72■□□□□ 0.43
LIMS1-212ENST00000474038 RNF20Q5VTR2 975 aa17.72■□□□□ 0.43
LIMS1-212ENST00000474038 MFSD14CQ5VZR4 134 aa17.72■□□□□ 0.43
LIMS1-212ENST00000474038 SNRNP48Q6IEG0 339 aaKnown RBP17.72■□□□□ 0.43
LIMS1-212ENST00000474038 DPP9Q86TI2 863 aa17.72■□□□□ 0.43
LIMS1-212ENST00000474038 CPXCR1Q8N123 301 aa17.72■□□□□ 0.43
LIMS1-212ENST00000474038 RAVER2Q9HCJ3 691 aaKnown RBP17.72■□□□□ 0.43
LIMS1-212ENST00000474038 OGDHLQ9ULD0 1010 aa17.72■□□□□ 0.43
LIMS1-212ENST00000474038 CTDP1Q9Y5B0 961 aaPredicted RBP17.72■□□□□ 0.43
LIMS1-212ENST00000474038 ALPK3Q96L96 1907 aa17.71■□□□□ 0.43
LIMS1-212ENST00000474038 STRNO43815 780 aa17.71■□□□□ 0.43
LIMS1-212ENST00000474038 COBLO75128 1261 aa17.71■□□□□ 0.43
LIMS1-212ENST00000474038 CYP2C19P33261 490 aa17.71■□□□□ 0.43
LIMS1-212ENST00000474038 OAZ1P54368 228 aa17.71■□□□□ 0.43
LIMS1-212ENST00000474038 NECAB2Q7Z6G3 386 aa17.71■□□□□ 0.43
LIMS1-212ENST00000474038 RASEFQ8IZ41 740 aa17.71■□□□□ 0.43
LIMS1-212ENST00000474038 ANKLE1Q8NAG6 615 aa17.71■□□□□ 0.43
LIMS1-212ENST00000474038 IGDCC4Q8TDY8 1250 aa17.71■□□□□ 0.43
LIMS1-212ENST00000474038 SENP2Q9HC62 589 aa17.71■□□□□ 0.43
LIMS1-212ENST00000474038 RIPK3Q9Y572 518 aa17.71■□□□□ 0.43
LIMS1-212ENST00000474038 MCM3APO60318 1980 aa17.71■□□□□ 0.43
LIMS1-212ENST00000474038 REC8O95072 547 aa17.7■□□□□ 0.42
LIMS1-212ENST00000474038 GOLGA8HP0CJ92 632 aa17.7■□□□□ 0.42
LIMS1-212ENST00000474038 COPB2P35606 906 aa17.7■□□□□ 0.42
LIMS1-212ENST00000474038 SNAP25P60880 206 aa17.7■□□□□ 0.42
LIMS1-212ENST00000474038 SART3Q15020 963 aaKnown RBP17.7■□□□□ 0.42
LIMS1-212ENST00000474038 HABP4Q5JVS0 413 aaKnown RBP17.7■□□□□ 0.42
LIMS1-212ENST00000474038 SYDE2Q5VT97 1194 aa17.7■□□□□ 0.42
LIMS1-212ENST00000474038 LHX8Q68G74 356 aa17.7■□□□□ 0.42
LIMS1-212ENST00000474038 ZNF536O15090 1300 aa17.7■□□□□ 0.42
LIMS1-212ENST00000474038 ERICH2A1L162 156 aa17.69■□□□□ 0.42
LIMS1-212ENST00000474038 PRC1O43663 620 aa17.69■□□□□ 0.42
LIMS1-212ENST00000474038 IGHA2P01877 340 aa17.69■□□□□ 0.42
LIMS1-212ENST00000474038 FCER1AP12319 257 aa17.69■□□□□ 0.42
LIMS1-212ENST00000474038 MCM5P33992 734 aa17.69■□□□□ 0.42
LIMS1-212ENST00000474038 SLC4A3P48751 1232 aa17.69■□□□□ 0.42
LIMS1-212ENST00000474038 WTAPQ15007 396 aa17.69■□□□□ 0.42
LIMS1-212ENST00000474038 TSGA10IPQ3SY00 556 aa17.69■□□□□ 0.42
LIMS1-212ENST00000474038 TMEM67Q5HYA8 995 aa17.69■□□□□ 0.42
LIMS1-212ENST00000474038 GPATCH4Q5T3I0 446 aaKnown RBP17.69■□□□□ 0.42
LIMS1-212ENST00000474038 ABRAQ8N0Z2 381 aa17.69■□□□□ 0.42
LIMS1-212ENST00000474038 TRPV1Q8NER1 839 aa17.69■□□□□ 0.42
LIMS1-212ENST00000474038 COLQQ9Y215 455 aaPredicted RBP17.69■□□□□ 0.42
LIMS1-212ENST00000474038 FRMPD3Q5JV73 1810 aa17.69■□□□□ 0.42
LIMS1-212ENST00000474038 EVI5O60447 810 aa17.68■□□□□ 0.42
LIMS1-212ENST00000474038 CNGA1P29973 690 aa17.68■□□□□ 0.42
LIMS1-212ENST00000474038 HSPA4P34932 840 aa17.68■□□□□ 0.42
LIMS1-212ENST00000474038 ASPRV1Q53RT3 343 aa17.68■□□□□ 0.42
LIMS1-212ENST00000474038 OLFML2BQ68BL8 750 aa17.68■□□□□ 0.42
LIMS1-212ENST00000474038 CCDC174Q6PII3 467 aa17.68■□□□□ 0.42
LIMS1-212ENST00000474038 KCNB2Q92953 911 aa17.68■□□□□ 0.42
LIMS1-212ENST00000474038 AGBL1Q96MI9 1066 aa17.68■□□□□ 0.42
LIMS1-212ENST00000474038 MMP19Q99542 508 aa17.68■□□□□ 0.42
LIMS1-212ENST00000474038 MTA3Q9BTC8 594 aa17.68■□□□□ 0.42
LIMS1-212ENST00000474038 RANBP17Q9H2T7 1088 aaKnown RBP17.68■□□□□ 0.42
LIMS1-212ENST00000474038 CPVLQ9H3G5 476 aa17.68■□□□□ 0.42
LIMS1-212ENST00000474038 C11orf49Q9H6J7 331 aa17.68■□□□□ 0.42
LIMS1-212ENST00000474038 GPHNQ9NQX3 736 aaPredicted RBP17.68■□□□□ 0.42
LIMS1-212ENST00000474038 LCTP09848 1927 aa17.67■□□□□ 0.42
LIMS1-212ENST00000474038 PARP1P09874 1014 aaKnown RBP17.67■□□□□ 0.42
LIMS1-212ENST00000474038 CYBAP13498 195 aa17.67■□□□□ 0.42
LIMS1-212ENST00000474038 ADCK5Q3MIX3 580 aa17.67■□□□□ 0.42
LIMS1-212ENST00000474038 CHRDL2Q6WN34 429 aa17.67■□□□□ 0.42
LIMS1-212ENST00000474038 TMEM87BQ96K49 555 aa17.67■□□□□ 0.42
LIMS1-212ENST00000474038 NEK1Q96PY6 1258 aa17.67■□□□□ 0.42
LIMS1-212ENST00000474038 UBA5Q9GZZ9 404 aa17.67■□□□□ 0.42
LIMS1-212ENST00000474038 LY9Q9HBG7 655 aa17.67■□□□□ 0.42
LIMS1-212ENST00000474038 DDX20Q9UHI6 824 aaKnown RBP17.67■□□□□ 0.42
LIMS1-212ENST00000474038 NR2E3Q9Y5X4 410 aa17.67■□□□□ 0.42
LIMS1-212ENST00000474038 PFASO15067 1338 aa17.67■□□□□ 0.42
LIMS1-212ENST00000474038 SH2B2O14492 632 aaPredicted RBP17.66■□□□□ 0.42
LIMS1-212ENST00000474038 EPB41L2O43491 1005 aaKnown RBP17.66■□□□□ 0.42
LIMS1-212ENST00000474038 PGK2P07205 417 aa17.66■□□□□ 0.42
LIMS1-212ENST00000474038 KRT32Q14532 448 aa17.66■□□□□ 0.42
LIMS1-212ENST00000474038 KCTD2Q14681 263 aa17.66■□□□□ 0.42
LIMS1-212ENST00000474038 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.66■□□□□ 0.42
LIMS1-212ENST00000474038 STAG2Q8N3U4 1231 aa17.66■□□□□ 0.42
LIMS1-212ENST00000474038 CHST13Q8NET6 341 aa17.66■□□□□ 0.42
LIMS1-212ENST00000474038 MAML3Q96JK9 1138 aa17.66■□□□□ 0.42
LIMS1-212ENST00000474038 HOMER2Q9NSB8 354 aa17.66■□□□□ 0.42
LIMS1-212ENST00000474038 SLC5A4Q9NY91 659 aa17.66■□□□□ 0.42
LIMS1-212ENST00000474038 ICAM1P05362 532 aa17.65■□□□□ 0.42
LIMS1-212ENST00000474038 TROAPQ12815 778 aa17.65■□□□□ 0.42
LIMS1-212ENST00000474038 GRM4Q14833 912 aa17.65■□□□□ 0.42
LIMS1-212ENST00000474038 PRAMEF19Q5SWL8 479 aa17.65■□□□□ 0.42
LIMS1-212ENST00000474038 ANO1Q5XXA6 986 aa17.65■□□□□ 0.42
LIMS1-212ENST00000474038 USP26Q9BXU7 913 aa17.65■□□□□ 0.42
LIMS1-212ENST00000474038 LRRC2Q9BYS8 371 aa17.65■□□□□ 0.42
LIMS1-212ENST00000474038 RNF146Q9NTX7 359 aa17.65■□□□□ 0.42
LIMS1-212ENST00000474038 FBXO40Q9UH90 709 aa17.65■□□□□ 0.42
LIMS1-212ENST00000474038 MAD2L2Q9UI95 211 aa17.65■□□□□ 0.42
LIMS1-212ENST00000474038 SNX14Q9Y5W7 946 aa17.65■□□□□ 0.42
LIMS1-212ENST00000474038 TRIOBPQ9H2D6 2365 aa17.65■□□□□ 0.42
LIMS1-212ENST00000474038 PALM3A6NDB9 673 aaPredicted RBP17.64■□□□□ 0.41
LIMS1-212ENST00000474038 COL6A1P12109 1028 aa17.64■□□□□ 0.41
LIMS1-212ENST00000474038 ALAS1P13196 640 aa17.64■□□□□ 0.41
LIMS1-212ENST00000474038 TAL1P17542 331 aaPredicted RBP17.64■□□□□ 0.41
LIMS1-212ENST00000474038 EXOSC10Q01780 885 aaKnown RBP17.64■□□□□ 0.41
LIMS1-212ENST00000474038 TKFCQ3LXA3 575 aa17.64■□□□□ 0.41
LIMS1-212ENST00000474038 DHX32Q7L7V1 743 aaKnown RBP17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms