RNA–Protein interactions for RNA: ENST00000472563.2

SYNE1-221, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 525 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-221ENST00000472563 PFASO15067 1338 aa14.06□□□□□ -0.16
SYNE1-221ENST00000472563 SYNGAP1Q96PV0 1343 aa14.06□□□□□ -0.16
SYNE1-221ENST00000472563 B4E1Z4 1266 aa14.05□□□□□ -0.16
SYNE1-221ENST00000472563 DNM1LO00429 736 aa14.05□□□□□ -0.16
SYNE1-221ENST00000472563 SLC16A2P36021 539 aa14.05□□□□□ -0.16
SYNE1-221ENST00000472563 SNAP25P60880 206 aa14.05□□□□□ -0.16
SYNE1-221ENST00000472563 ZNF543Q08ER8 600 aa14.05□□□□□ -0.16
SYNE1-221ENST00000472563 GPATCH4Q5T3I0 446 aaKnown RBP14.05□□□□□ -0.16
SYNE1-221ENST00000472563 SYDE2Q5VT97 1194 aa14.05□□□□□ -0.16
SYNE1-221ENST00000472563 CCDC174Q6PII3 467 aa14.05□□□□□ -0.16
SYNE1-221ENST00000472563 ZSCAN10Q96SZ4 725 aaPredicted RBP14.05□□□□□ -0.16
SYNE1-221ENST00000472563 ZKSCAN3Q9BRR0 538 aa14.05□□□□□ -0.16
SYNE1-221ENST00000472563 RANBP17Q9H2T7 1088 aaKnown RBP14.05□□□□□ -0.16
SYNE1-221ENST00000472563 GPCPD1Q9NPB8 672 aa14.05□□□□□ -0.16
SYNE1-221ENST00000472563 PNMA2Q9UL42 364 aa14.05□□□□□ -0.16
SYNE1-221ENST00000472563 U3KPZ7 1027 aaPredicted RBP14.05□□□□□ -0.16
SYNE1-221ENST00000472563 MYH8P13535 1937 aa14.04□□□□□ -0.16
SYNE1-221ENST00000472563 SNAI1O95863 264 aaPredicted RBP14.04□□□□□ -0.16
SYNE1-221ENST00000472563 ICAM1P05362 532 aa14.04□□□□□ -0.16
SYNE1-221ENST00000472563 ZNF865P0CJ78 1059 aaPredicted RBP14.04□□□□□ -0.16
SYNE1-221ENST00000472563 ALAS1P13196 640 aa14.04□□□□□ -0.16
SYNE1-221ENST00000472563 TAL1P17542 331 aaPredicted RBP14.04□□□□□ -0.16
SYNE1-221ENST00000472563 PTH1RQ03431 593 aa14.04□□□□□ -0.16
SYNE1-221ENST00000472563 HABP4Q5JVS0 413 aaKnown RBP14.04□□□□□ -0.16
SYNE1-221ENST00000472563 ENAHQ8N8S7 591 aaPredicted RBP14.04□□□□□ -0.16
SYNE1-221ENST00000472563 FAM133AQ8N9E0 248 aa14.04□□□□□ -0.16
SYNE1-221ENST00000472563 PNMA1Q8ND90 353 aa14.04□□□□□ -0.16
SYNE1-221ENST00000472563 FGD4Q96M96 766 aa14.04□□□□□ -0.16
SYNE1-221ENST00000472563 TRERF1Q96PN7 1200 aa14.04□□□□□ -0.16
SYNE1-221ENST00000472563 KAT14Q9H8E8 782 aa14.04□□□□□ -0.16
SYNE1-221ENST00000472563 A1CFQ9NQ94 594 aaKnown RBP14.04□□□□□ -0.16
SYNE1-221ENST00000472563 CCPG1Q9ULG6 757 aa14.04□□□□□ -0.16
SYNE1-221ENST00000472563 COLQQ9Y215 455 aaPredicted RBP14.04□□□□□ -0.16
SYNE1-221ENST00000472563 FRMPD2Q68DX3 1309 aaPredicted RBP14.04□□□□□ -0.16
SYNE1-221ENST00000472563 POTEB2H3BUK9 544 aa14.03□□□□□ -0.16
SYNE1-221ENST00000472563 CYP21A2P08686 494 aa14.03□□□□□ -0.16
SYNE1-221ENST00000472563 AKR1A1P14550 325 aa14.03□□□□□ -0.16
SYNE1-221ENST00000472563 MAP4K1Q92918 833 aa14.03□□□□□ -0.16
SYNE1-221ENST00000472563 UBAC1Q9BSL1 405 aa14.03□□□□□ -0.16
SYNE1-221ENST00000472563 SENP6Q9GZR1 1112 aaPredicted RBP14.03□□□□□ -0.16
SYNE1-221ENST00000472563 TNKSO95271 1327 aa14.03□□□□□ -0.16
SYNE1-221ENST00000472563 CEP290O15078 2479 aa14.02□□□□□ -0.16
SYNE1-221ENST00000472563 KBTBD13C9JR72 458 aa14.02□□□□□ -0.17
SYNE1-221ENST00000472563 RARBP10826 455 aa14.02□□□□□ -0.17
SYNE1-221ENST00000472563 CNTN2Q02246 1040 aa14.02□□□□□ -0.17
SYNE1-221ENST00000472563 TRDNQ13061 729 aa14.02□□□□□ -0.17
SYNE1-221ENST00000472563 LRRC41Q15345 812 aa14.02□□□□□ -0.17
SYNE1-221ENST00000472563 MUM1L1Q5H9M0 696 aa14.02□□□□□ -0.17
SYNE1-221ENST00000472563 GJC2Q5T442 439 aaPredicted RBP14.02□□□□□ -0.17
SYNE1-221ENST00000472563 ANO1Q5XXA6 986 aa14.02□□□□□ -0.17
SYNE1-221ENST00000472563 CHRDL2Q6WN34 429 aa14.02□□□□□ -0.17
SYNE1-221ENST00000472563 C7orf61Q8IZ16 206 aa14.02□□□□□ -0.17
SYNE1-221ENST00000472563 ABHD16BQ9H3Z7 469 aa14.02□□□□□ -0.17
SYNE1-221ENST00000472563 XPNPEP3Q9NQH7 507 aa14.02□□□□□ -0.17
SYNE1-221ENST00000472563 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.02□□□□□ -0.17
SYNE1-221ENST00000472563 CYP39A1Q9NYL5 469 aa14.02□□□□□ -0.17
SYNE1-221ENST00000472563 FAM184BQ9ULE4 1060 aa14.02□□□□□ -0.17
SYNE1-221ENST00000472563 WDR19Q8NEZ3 1342 aa14.01□□□□□ -0.17
SYNE1-221ENST00000472563 SOWAHBA6NEL2 793 aa14.01□□□□□ -0.17
SYNE1-221ENST00000472563 GOLGA8HP0CJ92 632 aa14.01□□□□□ -0.17
SYNE1-221ENST00000472563 ACVR2BQ13705 512 aa14.01□□□□□ -0.17
SYNE1-221ENST00000472563 SEC23AQ15436 765 aa14.01□□□□□ -0.17
SYNE1-221ENST00000472563 LRRC26Q2I0M4 334 aa14.01□□□□□ -0.17
SYNE1-221ENST00000472563 BMP2KLQ5H9B9 411 aa14.01□□□□□ -0.17
SYNE1-221ENST00000472563 ARMCX2Q7L311 632 aa14.01□□□□□ -0.17
SYNE1-221ENST00000472563 PRO3102Q9H379 93 aa14.01□□□□□ -0.17
SYNE1-221ENST00000472563 ZHX1Q9UKY1 873 aaPredicted RBP14.01□□□□□ -0.17
SYNE1-221ENST00000472563 ASB14A6NK59 587 aa14□□□□□ -0.17
SYNE1-221ENST00000472563 SLC34A2O95436 690 aa14□□□□□ -0.17
SYNE1-221ENST00000472563 ASPRV1Q53RT3 343 aa14□□□□□ -0.17
SYNE1-221ENST00000472563 IFIT1BQ5T764 474 aaKnown RBP14□□□□□ -0.17
SYNE1-221ENST00000472563 NSMFQ6X4W1 530 aa14□□□□□ -0.17
SYNE1-221ENST00000472563 KIAA1211Q6ZU35 1233 aa14□□□□□ -0.17
SYNE1-221ENST00000472563 CYB5R4Q7L1T6 521 aa14□□□□□ -0.17
SYNE1-221ENST00000472563 RNF180Q86T96 592 aa14□□□□□ -0.17
SYNE1-221ENST00000472563 CCDC144CPQ8IYA2 1237 aa14□□□□□ -0.17
SYNE1-221ENST00000472563 UBA5Q9GZZ9 404 aa14□□□□□ -0.17
SYNE1-221ENST00000472563 E7EWF7 191 aa13.99□□□□□ -0.17
SYNE1-221ENST00000472563 DUSP11O75319 330 aaKnown RBP13.99□□□□□ -0.17
SYNE1-221ENST00000472563 PGK1P00558 417 aa13.99□□□□□ -0.17
SYNE1-221ENST00000472563 MYCNP04198 464 aaPredicted RBP13.99□□□□□ -0.17
SYNE1-221ENST00000472563 PARP1P09874 1014 aaKnown RBP13.99□□□□□ -0.17
SYNE1-221ENST00000472563 ADCYAP1R1P41586 468 aa13.99□□□□□ -0.17
SYNE1-221ENST00000472563 RALYLQ86SE5 291 aaKnown RBP13.99□□□□□ -0.17
SYNE1-221ENST00000472563 NCOA7Q8NI08 942 aa13.99□□□□□ -0.17
SYNE1-221ENST00000472563 CLEC4DQ8WXI8 215 aa13.99□□□□□ -0.17
SYNE1-221ENST00000472563 ESYT1Q9BSJ8 1104 aa13.99□□□□□ -0.17
SYNE1-221ENST00000472563 KATNBL1Q9H079 304 aa13.99□□□□□ -0.17
SYNE1-221ENST00000472563 RBM27Q9P2N5 1060 aaKnown RBP13.99□□□□□ -0.17
SYNE1-221ENST00000472563 ZMYND8Q9ULU4 1186 aaPredicted RBP13.99□□□□□ -0.17
SYNE1-221ENST00000472563 PHF24Q9UPV7 400 aa13.99□□□□□ -0.17
SYNE1-221ENST00000472563 RBM8AQ9Y5S9 174 aaKnown RBP13.99□□□□□ -0.17
SYNE1-221ENST00000472563 TAF6LQ9Y6J9 622 aa13.99□□□□□ -0.17
SYNE1-221ENST00000472563 PARP14Q460N5 1801 aa13.99□□□□□ -0.17
SYNE1-221ENST00000472563 ASTN1O14525 1302 aa13.98□□□□□ -0.17
SYNE1-221ENST00000472563 LOC102724159A0A0B4J2E5 919 aa13.98□□□□□ -0.17
SYNE1-221ENST00000472563 NFIBO00712 420 aa13.98□□□□□ -0.17
SYNE1-221ENST00000472563 ADAMTS4O75173 837 aa13.98□□□□□ -0.17
SYNE1-221ENST00000472563 ATN1P54259 1190 aaPredicted RBP13.98□□□□□ -0.17
SYNE1-221ENST00000472563 BAATQ14032 418 aaPredicted RBP13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms