RNA–Protein interactions for RNA: ENST00000472490.1

BRCA1-211, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-211ENST00000472490 A0A0G2JMZ2 1700 aa16.56■□□□□ 0.24
BRCA1-211ENST00000472490 SH2B2O14492 632 aaPredicted RBP16.56■□□□□ 0.24
BRCA1-211ENST00000472490 DHX16O60231 1041 aaKnown RBP16.56■□□□□ 0.24
BRCA1-211ENST00000472490 ICAM1P05362 532 aa16.56■□□□□ 0.24
BRCA1-211ENST00000472490 HOXC6P09630 235 aa16.56■□□□□ 0.24
BRCA1-211ENST00000472490 ADORA2AP29274 412 aa16.56■□□□□ 0.24
BRCA1-211ENST00000472490 KIF5BP33176 963 aa16.56■□□□□ 0.24
BRCA1-211ENST00000472490 TROAPQ12815 778 aa16.56■□□□□ 0.24
BRCA1-211ENST00000472490 CCDC174Q6PII3 467 aa16.56■□□□□ 0.24
BRCA1-211ENST00000472490 CTCFLQ8NI51 663 aaPredicted RBP16.56■□□□□ 0.24
BRCA1-211ENST00000472490 SH3TC2Q8TF17 1288 aa16.56■□□□□ 0.24
BRCA1-211ENST00000472490 USP6NLQ92738 828 aa16.56■□□□□ 0.24
BRCA1-211ENST00000472490 ZNF333Q96JL9 665 aa16.56■□□□□ 0.24
BRCA1-211ENST00000472490 JAKMIP1Q96N16 626 aaKnown RBP16.56■□□□□ 0.24
BRCA1-211ENST00000472490 FOXD4L1Q9NU39 408 aa16.56■□□□□ 0.24
BRCA1-211ENST00000472490 CCPG1Q9ULG6 757 aa16.56■□□□□ 0.24
BRCA1-211ENST00000472490 SLC12A7Q9Y666 1083 aa16.56■□□□□ 0.24
BRCA1-211ENST00000472490 KLRF2D3W0D1 207 aa16.55■□□□□ 0.24
BRCA1-211ENST00000472490 HMGCRP04035 888 aa16.55■□□□□ 0.24
BRCA1-211ENST00000472490 GNAQP50148 359 aa16.55■□□□□ 0.24
BRCA1-211ENST00000472490 ADCK5Q3MIX3 580 aa16.55■□□□□ 0.24
BRCA1-211ENST00000472490 SGMS1Q86VZ5 419 aa16.55■□□□□ 0.24
BRCA1-211ENST00000472490 ZNF654Q8IZM8 581 aa16.55■□□□□ 0.24
BRCA1-211ENST00000472490 NUP133Q8WUM0 1156 aa16.55■□□□□ 0.24
BRCA1-211ENST00000472490 DDX11Q96FC9 970 aa16.55■□□□□ 0.24
BRCA1-211ENST00000472490 TMEM106CQ9BVX2 250 aa16.55■□□□□ 0.24
BRCA1-211ENST00000472490 ACAD9Q9H845 621 aa16.55■□□□□ 0.24
BRCA1-211ENST00000472490 ZNF536O15090 1300 aa16.54■□□□□ 0.24
BRCA1-211ENST00000472490 PALM3A6NDB9 673 aaPredicted RBP16.54■□□□□ 0.24
BRCA1-211ENST00000472490 ELNP15502 786 aa16.54■□□□□ 0.24
BRCA1-211ENST00000472490 EXOSC10Q01780 885 aaKnown RBP16.54■□□□□ 0.24
BRCA1-211ENST00000472490 TRAF1Q13077 416 aa16.54■□□□□ 0.24
BRCA1-211ENST00000472490 GRM4Q14833 912 aa16.54■□□□□ 0.24
BRCA1-211ENST00000472490 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.54■□□□□ 0.24
BRCA1-211ENST00000472490 ADGRF4Q8IZF3 695 aa16.54■□□□□ 0.24
BRCA1-211ENST00000472490 ANKRD35Q8N283 1001 aa16.54■□□□□ 0.24
BRCA1-211ENST00000472490 AGBL1Q96MI9 1066 aa16.54■□□□□ 0.24
BRCA1-211ENST00000472490 TRERF1Q96PN7 1200 aa16.54■□□□□ 0.24
BRCA1-211ENST00000472490 LZTS2Q9BRK4 669 aa16.54■□□□□ 0.24
BRCA1-211ENST00000472490 UBA5Q9GZZ9 404 aa16.54■□□□□ 0.24
BRCA1-211ENST00000472490 MAD2L2Q9UI95 211 aa16.54■□□□□ 0.24
BRCA1-211ENST00000472490 DIS3Q9Y2L1 958 aaKnown RBP16.54■□□□□ 0.24
BRCA1-211ENST00000472490 RIPK3Q9Y572 518 aa16.54■□□□□ 0.24
BRCA1-211ENST00000472490 RLFQ13129 1914 aa16.53■□□□□ 0.24
BRCA1-211ENST00000472490 INHAP05111 366 aa16.53■□□□□ 0.24
BRCA1-211ENST00000472490 ALAS1P13196 640 aa16.53■□□□□ 0.24
BRCA1-211ENST00000472490 IFFO2Q5TF58 517 aa16.53■□□□□ 0.24
BRCA1-211ENST00000472490 MFSD14CQ5VZR4 134 aa16.53■□□□□ 0.24
BRCA1-211ENST00000472490 SENP2Q9HC62 589 aa16.53■□□□□ 0.24
BRCA1-211ENST00000472490 HOMER2Q9NSB8 354 aa16.53■□□□□ 0.24
BRCA1-211ENST00000472490 RNF146Q9NTX7 359 aa16.53■□□□□ 0.24
BRCA1-211ENST00000472490 PFASO15067 1338 aa16.52■□□□□ 0.24
BRCA1-211ENST00000472490 CASTP20810 708 aaKnown RBP16.52■□□□□ 0.24
BRCA1-211ENST00000472490 RPS6KB1P23443 525 aa16.52■□□□□ 0.24
BRCA1-211ENST00000472490 ANAPC15P60006 121 aa16.52■□□□□ 0.24
BRCA1-211ENST00000472490 SNAP25P60880 206 aa16.52■□□□□ 0.24
BRCA1-211ENST00000472490 CDC37Q16543 378 aaPredicted RBP16.52■□□□□ 0.24
BRCA1-211ENST00000472490 OLFML2BQ68BL8 750 aa16.52■□□□□ 0.24
BRCA1-211ENST00000472490 STAG2Q8N3U4 1231 aa16.52■□□□□ 0.24
BRCA1-211ENST00000472490 FBXL16Q8N461 479 aa16.52■□□□□ 0.24
BRCA1-211ENST00000472490 TRIB2Q92519 343 aa16.52■□□□□ 0.24
BRCA1-211ENST00000472490 LRRC2Q9BYS8 371 aa16.52■□□□□ 0.24
BRCA1-211ENST00000472490 TM6SF1Q9BZW5 370 aa16.52■□□□□ 0.24
BRCA1-211ENST00000472490 GTF3C3Q9Y5Q9 886 aa16.52■□□□□ 0.24
BRCA1-211ENST00000472490 CYP46A1Q9Y6A2 500 aa16.52■□□□□ 0.24
BRCA1-211ENST00000472490 CAPN2P17655 700 aa16.51■□□□□ 0.23
BRCA1-211ENST00000472490 SMARCA1P28370 1054 aa16.51■□□□□ 0.23
BRCA1-211ENST00000472490 RCAN1P53805 252 aa16.51■□□□□ 0.23
BRCA1-211ENST00000472490 RUFY3Q7L099 469 aa16.51■□□□□ 0.23
BRCA1-211ENST00000472490 MAF1Q9H063 256 aa16.51■□□□□ 0.23
BRCA1-211ENST00000472490 JMJD4Q9H9V9 463 aa16.51■□□□□ 0.23
BRCA1-211ENST00000472490 VAT1LQ9HCJ6 419 aa16.51■□□□□ 0.23
BRCA1-211ENST00000472490 GPHNQ9NQX3 736 aaPredicted RBP16.51■□□□□ 0.23
BRCA1-211ENST00000472490 ZSWIM8A7E2V4 1837 aa16.51■□□□□ 0.23
BRCA1-211ENST00000472490 RPTORQ8N122 1335 aa16.5■□□□□ 0.23
BRCA1-211ENST00000472490 COBLO75128 1261 aa16.5■□□□□ 0.23
BRCA1-211ENST00000472490 PPP2R5BQ15173 497 aa16.5■□□□□ 0.23
BRCA1-211ENST00000472490 APOA5Q6Q788 366 aa16.5■□□□□ 0.23
BRCA1-211ENST00000472490 MICU3Q86XE3 530 aa16.5■□□□□ 0.23
BRCA1-211ENST00000472490 FBXO11Q86XK2 927 aa16.5■□□□□ 0.23
BRCA1-211ENST00000472490 MSL3Q8N5Y2 521 aaKnown RBP16.5■□□□□ 0.23
BRCA1-211ENST00000472490 FANCBQ8NB91 859 aa16.5■□□□□ 0.23
BRCA1-211ENST00000472490 NPLOC4Q8TAT6 608 aa16.5■□□□□ 0.23
BRCA1-211ENST00000472490 TCEANC2Q96MN5 208 aa16.5■□□□□ 0.23
BRCA1-211ENST00000472490 MYL10Q9BUA6 226 aa16.5■□□□□ 0.23
BRCA1-211ENST00000472490 AMNQ9BXJ7 453 aa16.5■□□□□ 0.23
BRCA1-211ENST00000472490 RNF208Q9H0X6 261 aa16.5■□□□□ 0.23
BRCA1-211ENST00000472490 CPVLQ9H3G5 476 aa16.5■□□□□ 0.23
BRCA1-211ENST00000472490 RIOX1Q9H6W3 641 aa16.5■□□□□ 0.23
BRCA1-211ENST00000472490 ZSWIM6Q9HCJ5 1215 aa16.5■□□□□ 0.23
BRCA1-211ENST00000472490 HMX1Q9NP08 348 aaPredicted RBP16.5■□□□□ 0.23
BRCA1-211ENST00000472490 RBM28Q9NW13 759 aaKnown RBP16.5■□□□□ 0.23
BRCA1-211ENST00000472490 MGAMO43451 1857 aa16.5■□□□□ 0.23
BRCA1-211ENST00000472490 PARP14Q460N5 1801 aa16.49■□□□□ 0.23
BRCA1-211ENST00000472490 ABCB11O95342 1321 aa16.49■□□□□ 0.23
BRCA1-211ENST00000472490 DNAJC25-GNG10A0A024R161 153 aa16.49■□□□□ 0.23
BRCA1-211ENST00000472490 CCDC196A0A1B0GTZ2 297 aa16.49■□□□□ 0.23
BRCA1-211ENST00000472490 ZBTB5O15062 677 aa16.49■□□□□ 0.23
BRCA1-211ENST00000472490 ZBTB43O43298 467 aa16.49■□□□□ 0.23
BRCA1-211ENST00000472490 MYCP01106 439 aaPredicted RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms