RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 DDX20Q9UHI6 824 aaKnown RBP18.43■□□□□ 0.54
HDAC6-218ENST00000470942 DIS3Q9Y2L1 958 aaKnown RBP18.43■□□□□ 0.54
HDAC6-218ENST00000470942 MSCO60682 206 aa18.42■□□□□ 0.54
HDAC6-218ENST00000470942 CYP21A2P08686 494 aa18.42■□□□□ 0.54
HDAC6-218ENST00000470942 ALAS1P13196 640 aa18.42■□□□□ 0.54
HDAC6-218ENST00000470942 BTNL9Q6UXG8 535 aa18.42■□□□□ 0.54
HDAC6-218ENST00000470942 PNMA1Q8ND90 353 aa18.42■□□□□ 0.54
HDAC6-218ENST00000470942 TINF2Q9BSI4 451 aa18.42■□□□□ 0.54
HDAC6-218ENST00000470942 ACAD9Q9H845 621 aa18.42■□□□□ 0.54
HDAC6-218ENST00000470942 RNF146Q9NTX7 359 aa18.42■□□□□ 0.54
HDAC6-218ENST00000470942 ZNF536O15090 1300 aa18.42■□□□□ 0.54
HDAC6-218ENST00000470942 TNKSO95271 1327 aa18.42■□□□□ 0.54
HDAC6-218ENST00000470942 SMCHD1A6NHR9 2005 aa18.41■□□□□ 0.54
HDAC6-218ENST00000470942 ZNF543Q08ER8 600 aa18.41■□□□□ 0.54
HDAC6-218ENST00000470942 TKFCQ3LXA3 575 aa18.41■□□□□ 0.54
HDAC6-218ENST00000470942 ENAHQ8N8S7 591 aaPredicted RBP18.41■□□□□ 0.54
HDAC6-218ENST00000470942 MAP4K1Q92918 833 aa18.41■□□□□ 0.54
HDAC6-218ENST00000470942 TRERF1Q96PN7 1200 aa18.41■□□□□ 0.54
HDAC6-218ENST00000470942 C11orf49Q9H6J7 331 aa18.41■□□□□ 0.54
HDAC6-218ENST00000470942 CCPG1Q9ULG6 757 aa18.41■□□□□ 0.54
HDAC6-218ENST00000470942 GOLGA8HP0CJ92 632 aa18.4■□□□□ 0.54
HDAC6-218ENST00000470942 BMP2KLQ5H9B9 411 aa18.4■□□□□ 0.54
HDAC6-218ENST00000470942 ANO1Q5XXA6 986 aa18.4■□□□□ 0.54
HDAC6-218ENST00000470942 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.4■□□□□ 0.54
HDAC6-218ENST00000470942 ANKS1AQ92625 1134 aa18.4■□□□□ 0.54
HDAC6-218ENST00000470942 ESYT1Q9BSJ8 1104 aa18.4■□□□□ 0.54
HDAC6-218ENST00000470942 RANBP17Q9H2T7 1088 aaKnown RBP18.4■□□□□ 0.54
HDAC6-218ENST00000470942 RBM8AQ9Y5S9 174 aaKnown RBP18.4■□□□□ 0.54
HDAC6-218ENST00000470942 CEP290O15078 2479 aa18.4■□□□□ 0.54
HDAC6-218ENST00000470942 DNAJC25-GNG10A0A024R161 153 aa18.39■□□□□ 0.53
HDAC6-218ENST00000470942 SEPT4O43236 478 aa18.39■□□□□ 0.53
HDAC6-218ENST00000470942 ICAM1P05362 532 aa18.39■□□□□ 0.53
HDAC6-218ENST00000470942 SNHG28P0DPA3 235 aa18.39■□□□□ 0.53
HDAC6-218ENST00000470942 MNX1P50219 401 aaPredicted RBP18.39■□□□□ 0.53
HDAC6-218ENST00000470942 GPATCH4Q5T3I0 446 aaKnown RBP18.39■□□□□ 0.53
HDAC6-218ENST00000470942 IFIT1BQ5T764 474 aaKnown RBP18.39■□□□□ 0.53
HDAC6-218ENST00000470942 CYB5R4Q7L1T6 521 aa18.39■□□□□ 0.53
HDAC6-218ENST00000470942 RALYLQ86SE5 291 aaKnown RBP18.39■□□□□ 0.53
HDAC6-218ENST00000470942 CNPY2Q9Y2B0 182 aa18.39■□□□□ 0.53
HDAC6-218ENST00000470942 MCM3APO60318 1980 aa18.39■□□□□ 0.53
HDAC6-218ENST00000470942 E7EWF7 191 aa18.38■□□□□ 0.53
HDAC6-218ENST00000470942 POTEB2H3BUK9 544 aa18.38■□□□□ 0.53
HDAC6-218ENST00000470942 NCOA7Q8NI08 942 aa18.38■□□□□ 0.53
HDAC6-218ENST00000470942 UBA5Q9GZZ9 404 aa18.38■□□□□ 0.53
HDAC6-218ENST00000470942 NRBP1Q9UHY1 535 aa18.38■□□□□ 0.53
HDAC6-218ENST00000470942 ALPK3Q96L96 1907 aa18.38■□□□□ 0.53
HDAC6-218ENST00000470942 H0YGN5 161 aa18.37■□□□□ 0.53
HDAC6-218ENST00000470942 EVI5O60447 810 aa18.37■□□□□ 0.53
HDAC6-218ENST00000470942 MYCNP04198 464 aaPredicted RBP18.37■□□□□ 0.53
HDAC6-218ENST00000470942 TAL1P17542 331 aaPredicted RBP18.37■□□□□ 0.53
HDAC6-218ENST00000470942 MUM1L1Q5H9M0 696 aa18.37■□□□□ 0.53
HDAC6-218ENST00000470942 MSL3Q8N5Y2 521 aaKnown RBP18.37■□□□□ 0.53
HDAC6-218ENST00000470942 LSG1Q9H089 658 aaKnown RBP18.37■□□□□ 0.53
HDAC6-218ENST00000470942 CPVLQ9H3G5 476 aa18.37■□□□□ 0.53
HDAC6-218ENST00000470942 ANO2Q9NQ90 1003 aa18.37■□□□□ 0.53
HDAC6-218ENST00000470942 A1CFQ9NQ94 594 aaKnown RBP18.37■□□□□ 0.53
HDAC6-218ENST00000470942 NR2E3Q9Y5X4 410 aa18.37■□□□□ 0.53
HDAC6-218ENST00000470942 TAF6LQ9Y6J9 622 aa18.37■□□□□ 0.53
HDAC6-218ENST00000470942 MYH6P13533 1939 aa18.37■□□□□ 0.53
HDAC6-218ENST00000470942 ERICH2A1L162 156 aa18.36■□□□□ 0.53
HDAC6-218ENST00000470942 IFIT3O14879 490 aaKnown RBP18.36■□□□□ 0.53
HDAC6-218ENST00000470942 PFASO15067 1338 aa18.36■□□□□ 0.53
HDAC6-218ENST00000470942 PARP1P09874 1014 aaKnown RBP18.36■□□□□ 0.53
HDAC6-218ENST00000470942 CNTN2Q02246 1040 aa18.36■□□□□ 0.53
HDAC6-218ENST00000470942 SEC23AQ15436 765 aa18.36■□□□□ 0.53
HDAC6-218ENST00000470942 ASPRV1Q53RT3 343 aa18.36■□□□□ 0.53
HDAC6-218ENST00000470942 CASC1Q6TDU7 716 aa18.36■□□□□ 0.53
HDAC6-218ENST00000470942 NSMFQ6X4W1 530 aa18.36■□□□□ 0.53
HDAC6-218ENST00000470942 STOX1Q6ZVD7 989 aa18.36■□□□□ 0.53
HDAC6-218ENST00000470942 ZNF467Q7Z7K2 595 aaPredicted RBP18.36■□□□□ 0.53
HDAC6-218ENST00000470942 ARRDC4Q8NCT1 418 aa18.36■□□□□ 0.53
HDAC6-218ENST00000470942 SYNGAP1Q96PV0 1343 aa18.36■□□□□ 0.53
HDAC6-218ENST00000470942 DHX16O60231 1041 aaKnown RBP18.35■□□□□ 0.53
HDAC6-218ENST00000470942 SNAI1O95863 264 aaPredicted RBP18.35■□□□□ 0.53
HDAC6-218ENST00000470942 ZNF865P0CJ78 1059 aaPredicted RBP18.35■□□□□ 0.53
HDAC6-218ENST00000470942 GJC2Q5T442 439 aaPredicted RBP18.35■□□□□ 0.53
HDAC6-218ENST00000470942 MAMDC4Q6UXC1 1216 aa18.35■□□□□ 0.53
HDAC6-218ENST00000470942 CHST3Q7LGC8 479 aa18.35■□□□□ 0.53
HDAC6-218ENST00000470942 ZHX1Q9UKY1 873 aaPredicted RBP18.35■□□□□ 0.53
HDAC6-218ENST00000470942 PNMA2Q9UL42 364 aa18.35■□□□□ 0.53
HDAC6-218ENST00000470942 RARBP10826 455 aa18.34■□□□□ 0.53
HDAC6-218ENST00000470942 AKR1A1P14550 325 aa18.34■□□□□ 0.53
HDAC6-218ENST00000470942 WTAPQ15007 396 aa18.34■□□□□ 0.53
HDAC6-218ENST00000470942 SART3Q15020 963 aaKnown RBP18.34■□□□□ 0.53
HDAC6-218ENST00000470942 ARMCX2Q7L311 632 aa18.34■□□□□ 0.53
HDAC6-218ENST00000470942 FAM133AQ8N9E0 248 aa18.34■□□□□ 0.53
HDAC6-218ENST00000470942 FGD4Q96M96 766 aa18.34■□□□□ 0.53
HDAC6-218ENST00000470942 SENP6Q9GZR1 1112 aaPredicted RBP18.34■□□□□ 0.53
HDAC6-218ENST00000470942 VAT1LQ9HCJ6 419 aa18.34■□□□□ 0.53
HDAC6-218ENST00000470942 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.34■□□□□ 0.53
HDAC6-218ENST00000470942 CYP39A1Q9NYL5 469 aa18.34■□□□□ 0.53
HDAC6-218ENST00000470942 SOWAHBA6NEL2 793 aa18.33■□□□□ 0.52
HDAC6-218ENST00000470942 KBTBD13C9JR72 458 aa18.33■□□□□ 0.52
HDAC6-218ENST00000470942 DNM1LO00429 736 aa18.33■□□□□ 0.52
HDAC6-218ENST00000470942 CDC45O75419 566 aa18.33■□□□□ 0.52
HDAC6-218ENST00000470942 COL6A1P12109 1028 aa18.33■□□□□ 0.52
HDAC6-218ENST00000470942 ACVR2BQ13705 512 aa18.33■□□□□ 0.52
HDAC6-218ENST00000470942 CCDC144CPQ8IYA2 1237 aa18.33■□□□□ 0.52
HDAC6-218ENST00000470942 C7orf61Q8IZ16 206 aa18.33■□□□□ 0.52
HDAC6-218ENST00000470942 ADGRF4Q8IZF3 695 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms