RNA–Protein interactions for RNA: ENST00000468949.1

HDAC6-216, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-216ENST00000468949 GTF3C2Q8WUA4 911 aaPredicted RBP9.4□□□□□ -0.9
HDAC6-216ENST00000468949 PARK7Q99497 189 aaKnown RBP9.4□□□□□ -0.9
HDAC6-216ENST00000468949 SPZ1Q9BXG8 430 aa9.4□□□□□ -0.9
HDAC6-216ENST00000468949 UBA5Q9GZZ9 404 aa9.4□□□□□ -0.9
HDAC6-216ENST00000468949 VAT1LQ9HCJ6 419 aa9.4□□□□□ -0.9
HDAC6-216ENST00000468949 HPS5Q9UPZ3 1129 aa9.4□□□□□ -0.9
HDAC6-216ENST00000468949 CASP8AP2Q9UKL3 1982 aa9.4□□□□□ -0.9
HDAC6-216ENST00000468949 PTPRFP10586 1907 aa9.4□□□□□ -0.9
HDAC6-216ENST00000468949 PHIPQ8WWQ0 1821 aa9.4□□□□□ -0.91
HDAC6-216ENST00000468949 CNTNAP5Q8WYK1 1306 aa9.39□□□□□ -0.91
HDAC6-216ENST00000468949 TESPA1A2RU30 521 aaPredicted RBP9.39□□□□□ -0.91
HDAC6-216ENST00000468949 PALM3A6NDB9 673 aaPredicted RBP9.39□□□□□ -0.91
HDAC6-216ENST00000468949 DEXIO95424 95 aa9.39□□□□□ -0.91
HDAC6-216ENST00000468949 TBC1D8O95759 1140 aa9.39□□□□□ -0.91
HDAC6-216ENST00000468949 FDX1P10109 184 aa9.39□□□□□ -0.91
HDAC6-216ENST00000468949 IFNAR1P17181 557 aa9.39□□□□□ -0.91
HDAC6-216ENST00000468949 CDC37Q16543 378 aaPredicted RBP9.39□□□□□ -0.91
HDAC6-216ENST00000468949 TREML2Q5T2D2 321 aa9.39□□□□□ -0.91
HDAC6-216ENST00000468949 ANKRD23Q86SG2 305 aa9.39□□□□□ -0.91
HDAC6-216ENST00000468949 CMTR1Q8N1G2 835 aaKnown RBP9.39□□□□□ -0.91
HDAC6-216ENST00000468949 PRPF38AQ8NAV1 312 aaKnown RBP9.39□□□□□ -0.91
HDAC6-216ENST00000468949 CCDC12Q8WUD4 166 aaPredicted RBP9.39□□□□□ -0.91
HDAC6-216ENST00000468949 BRI3BPQ8WY22 251 aa9.39□□□□□ -0.91
HDAC6-216ENST00000468949 PHKBQ93100 1093 aa9.39□□□□□ -0.91
HDAC6-216ENST00000468949 DDX11Q96FC9 970 aa9.39□□□□□ -0.91
HDAC6-216ENST00000468949 INTS4Q96HW7 963 aaKnown RBP9.39□□□□□ -0.91
HDAC6-216ENST00000468949 MS4A4AQ96JQ5 239 aa9.39□□□□□ -0.91
HDAC6-216ENST00000468949 RNF26Q9BY78 433 aaPredicted RBP9.39□□□□□ -0.91
HDAC6-216ENST00000468949 CWC22Q9HCG8 908 aaKnown RBP9.39□□□□□ -0.91
HDAC6-216ENST00000468949 ZCCHC17Q9NP64 241 aaKnown RBP9.39□□□□□ -0.91
HDAC6-216ENST00000468949 ORC3Q9UBD5 711 aaPredicted RBP9.39□□□□□ -0.91
HDAC6-216ENST00000468949 PNMA2Q9UL42 364 aa9.39□□□□□ -0.91
HDAC6-216ENST00000468949 PPP1R9AQ9ULJ8 1098 aa9.39□□□□□ -0.91
HDAC6-216ENST00000468949 PCDHB8Q9UN66 801 aa9.39□□□□□ -0.91
HDAC6-216ENST00000468949 PCDHB13Q9Y5F0 798 aa9.39□□□□□ -0.91
HDAC6-216ENST00000468949 STK24Q9Y6E0 443 aa9.39□□□□□ -0.91
HDAC6-216ENST00000468949 MYPNQ86TC9 1320 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 STK36Q9NRP7 1315 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 GPR25O00155 361 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 PDHXO00330 501 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 PLA2G6O60733 806 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 FMNL1O95466 1100 aaPredicted RBP9.38□□□□□ -0.91
HDAC6-216ENST00000468949 CD44P16070 742 aaKnown RBP9.38□□□□□ -0.91
HDAC6-216ENST00000468949 PDCP20941 246 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 SMARCA1P28370 1054 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 SLC4A3P48751 1232 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 CRHR2Q13324 411 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 CUL4AQ13619 759 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 GNL2Q13823 731 aaKnown RBP9.38□□□□□ -0.91
HDAC6-216ENST00000468949 PLS1Q14651 629 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 COG2Q14746 738 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 TAF1CQ15572 869 aaPredicted RBP9.38□□□□□ -0.91
HDAC6-216ENST00000468949 KIAA1755Q5JYT7 1200 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 TTBK2Q6IQ55 1244 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 CCDC174Q6PII3 467 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 CATSPERGQ6ZRH7 1159 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 HEATR3Q7Z4Q2 680 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 CTU1Q7Z7A3 348 aaKnown RBP9.38□□□□□ -0.91
HDAC6-216ENST00000468949 CCAR1Q8IX12 1150 aaKnown RBP9.38□□□□□ -0.91
HDAC6-216ENST00000468949 ADGRF4Q8IZF3 695 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 SRBD1Q8N5C6 995 aaKnown RBP9.38□□□□□ -0.91
HDAC6-216ENST00000468949 MB21D1Q8N884 522 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 NSUN7Q8NE18 718 aaKnown RBP9.38□□□□□ -0.91
HDAC6-216ENST00000468949 CCDC148Q8NFR7 591 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 ZNF296Q8WUU4 475 aaPredicted RBP9.38□□□□□ -0.91
HDAC6-216ENST00000468949 ABHD8Q96I13 439 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 BRMS1Q9HCU9 246 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 HOXC10Q9NYD6 342 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 PRR12Q9ULL5 1215 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 SLC45A1Q9Y2W3 748 aa9.38□□□□□ -0.91
HDAC6-216ENST00000468949 BTBD19C9JJ37 291 aa9.37□□□□□ -0.91
HDAC6-216ENST00000468949 H3BQV1 296 aa9.37□□□□□ -0.91
HDAC6-216ENST00000468949 hCG_1984214I3L0E3 225 aa9.37□□□□□ -0.91
HDAC6-216ENST00000468949 ZBTB5O15062 677 aa9.37□□□□□ -0.91
HDAC6-216ENST00000468949 JAK2O60674 1132 aa9.37□□□□□ -0.91
HDAC6-216ENST00000468949 FKTNO75072 461 aa9.37□□□□□ -0.91
HDAC6-216ENST00000468949 PPFIA3O75145 1194 aa9.37□□□□□ -0.91
HDAC6-216ENST00000468949 GJB2P29033 226 aa9.37□□□□□ -0.91
HDAC6-216ENST00000468949 HOXA7P31268 230 aaPredicted RBP9.37□□□□□ -0.91
HDAC6-216ENST00000468949 FOSBP53539 338 aa9.37□□□□□ -0.91
HDAC6-216ENST00000468949 BTNL9Q6UXG8 535 aa9.37□□□□□ -0.91
HDAC6-216ENST00000468949 ZNF467Q7Z7K2 595 aaPredicted RBP9.37□□□□□ -0.91
HDAC6-216ENST00000468949 FBXO11Q86XK2 927 aa9.37□□□□□ -0.91
HDAC6-216ENST00000468949 ZNF713Q8N859 430 aaPredicted RBP9.37□□□□□ -0.91
HDAC6-216ENST00000468949 ATG4CQ96DT6 458 aa9.37□□□□□ -0.91
HDAC6-216ENST00000468949 IPO9Q96P70 1041 aaKnown RBP9.37□□□□□ -0.91
HDAC6-216ENST00000468949 PIGSQ96S52 555 aa9.37□□□□□ -0.91
HDAC6-216ENST00000468949 PTPN18Q99952 460 aa9.37□□□□□ -0.91
HDAC6-216ENST00000468949 ALG1Q9BT22 464 aa9.37□□□□□ -0.91
HDAC6-216ENST00000468949 PAGR1Q9BTK6 254 aa9.37□□□□□ -0.91
HDAC6-216ENST00000468949 MCOLN1Q9GZU1 580 aa9.37□□□□□ -0.91
HDAC6-216ENST00000468949 ASCC2Q9H1I8 757 aaPredicted RBP9.37□□□□□ -0.91
HDAC6-216ENST00000468949 CPVLQ9H3G5 476 aa9.37□□□□□ -0.91
HDAC6-216ENST00000468949 FBXO28Q9NVF7 368 aa9.37□□□□□ -0.91
HDAC6-216ENST00000468949 CCPG1Q9ULG6 757 aa9.37□□□□□ -0.91
HDAC6-216ENST00000468949 V9GY48 417 aaPredicted RBP9.37□□□□□ -0.91
HDAC6-216ENST00000468949 PNMA6FA0A0J9YX94 578 aa9.36□□□□□ -0.91
HDAC6-216ENST00000468949 hCG_1642624A0A1W2PR95 340 aa9.36□□□□□ -0.91
HDAC6-216ENST00000468949 SPDYE16A6NNV3 312 aaPredicted RBP9.36□□□□□ -0.91
HDAC6-216ENST00000468949 PRPF3O43395 683 aaKnown RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms