RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 C20orf173Q96LM9 149 aa6.98□□□□□ -1.29
CCDC88A-210ENST00000468534 FAM86C1Q9NVL1 165 aa6.98□□□□□ -1.29
CCDC88A-210ENST00000468534 BCCIPQ9P287 314 aaKnown RBP eCLIP6.98□□□□□ -1.29
CCDC88A-210ENST00000468534 C9IYK1 514 aa6.97□□□□□ -1.29
CCDC88A-210ENST00000468534 HRKO00198 91 aa6.97□□□□□ -1.29
CCDC88A-210ENST00000468534 MPOP05164 745 aa6.97□□□□□ -1.29
CCDC88A-210ENST00000468534 VAV1P15498 845 aa6.97□□□□□ -1.29
CCDC88A-210ENST00000468534 BUD31P41223 144 aaPredicted RBP6.97□□□□□ -1.29
CCDC88A-210ENST00000468534 ERVFRD-1P60508 538 aa6.97□□□□□ -1.29
CCDC88A-210ENST00000468534 CYP4F8P98187 520 aa6.97□□□□□ -1.29
CCDC88A-210ENST00000468534 VMACQ2NL98 169 aa6.97□□□□□ -1.29
CCDC88A-210ENST00000468534 FBXW10Q5XX13 1052 aa6.97□□□□□ -1.29
CCDC88A-210ENST00000468534 OLFML2BQ68BL8 750 aa6.97□□□□□ -1.29
CCDC88A-210ENST00000468534 TMC6Q7Z403 805 aa6.97□□□□□ -1.29
CCDC88A-210ENST00000468534 NAT16Q8N8M0 369 aa6.97□□□□□ -1.29
CCDC88A-210ENST00000468534 SUCOQ9UBS9 1254 aaKnown RBP6.97□□□□□ -1.29
CCDC88A-210ENST00000468534 N4BP3O15049 544 aa6.96□□□□□ -1.3
CCDC88A-210ENST00000468534 TRIM13O60858 407 aa6.96□□□□□ -1.3
CCDC88A-210ENST00000468534 GSTM1P09488 218 aa6.96□□□□□ -1.3
CCDC88A-210ENST00000468534 ACRP10323 421 aa6.96□□□□□ -1.3
CCDC88A-210ENST00000468534 ENDOUP21128 410 aaKnown RBP6.96□□□□□ -1.3
CCDC88A-210ENST00000468534 CDR1P51861 262 aa6.96□□□□□ -1.3
CCDC88A-210ENST00000468534 SLCO6A1Q86UG4 719 aa6.96□□□□□ -1.3
CCDC88A-210ENST00000468534 TMEM151BQ8IW70 566 aa6.96□□□□□ -1.3
CCDC88A-210ENST00000468534 KLHL14Q9P2G3 628 aa6.96□□□□□ -1.3
CCDC88A-210ENST00000468534 USP35Q9P2H5 1018 aa6.96□□□□□ -1.3
CCDC88A-210ENST00000468534 IMPACTQ9P2X3 320 aa6.96□□□□□ -1.3
CCDC88A-210ENST00000468534 A0A1W2PQ27 194 aa6.95□□□□□ -1.3
CCDC88A-210ENST00000468534 A0A1W2PQ64 194 aa6.95□□□□□ -1.3
CCDC88A-210ENST00000468534 A0A1W2PQC6 194 aa6.95□□□□□ -1.3
CCDC88A-210ENST00000468534 A0A1W2PQD8 194 aa6.95□□□□□ -1.3
CCDC88A-210ENST00000468534 ABLIM1O14639 778 aa6.95□□□□□ -1.3
CCDC88A-210ENST00000468534 ZNF76P36508 570 aa6.95□□□□□ -1.3
CCDC88A-210ENST00000468534 AFF3P51826 1226 aaKnown RBP6.95□□□□□ -1.3
CCDC88A-210ENST00000468534 NCKAP1LP55160 1127 aa6.95□□□□□ -1.3
CCDC88A-210ENST00000468534 YBX1P67809 324 aaKnown RBP6.95□□□□□ -1.3
CCDC88A-210ENST00000468534 LAPTM5Q13571 262 aa6.95□□□□□ -1.3
CCDC88A-210ENST00000468534 ZNF394Q53GI3 561 aa6.95□□□□□ -1.3
CCDC88A-210ENST00000468534 USP48Q86UV5 1035 aa6.95□□□□□ -1.3
CCDC88A-210ENST00000468534 C7orf61Q8IZ16 206 aa6.95□□□□□ -1.3
CCDC88A-210ENST00000468534 MARCH10Q8NA82 808 aaPredicted RBP6.95□□□□□ -1.3
CCDC88A-210ENST00000468534 MZB1Q8WU39 189 aa6.95□□□□□ -1.3
CCDC88A-210ENST00000468534 DHRS1Q96LJ7 313 aa6.95□□□□□ -1.3
CCDC88A-210ENST00000468534 FERD3LQ96RJ6 166 aa6.95□□□□□ -1.3
CCDC88A-210ENST00000468534 JMJD8Q96S16 334 aa6.95□□□□□ -1.3
CCDC88A-210ENST00000468534 ZNRF3Q9ULT6 936 aa6.95□□□□□ -1.3
CCDC88A-210ENST00000468534 PCDHGB7Q9Y5F8 929 aa6.95□□□□□ -1.3
CCDC88A-210ENST00000468534 A0A0G2JLL6 359 aaPredicted RBP6.94□□□□□ -1.3
CCDC88A-210ENST00000468534 A0A1W2PQ45 241 aaPredicted RBP6.94□□□□□ -1.3
CCDC88A-210ENST00000468534 A0A1W2PQY0 241 aa6.94□□□□□ -1.3
CCDC88A-210ENST00000468534 H0Y8X5 98 aa6.94□□□□□ -1.3
CCDC88A-210ENST00000468534 SHOXO15266 292 aa6.94□□□□□ -1.3
CCDC88A-210ENST00000468534 TP53P04637 393 aaPredicted RBP6.94□□□□□ -1.3
CCDC88A-210ENST00000468534 GSNP06396 782 aa6.94□□□□□ -1.3
CCDC88A-210ENST00000468534 CEBPAP49715 358 aaPredicted RBP6.94□□□□□ -1.3
CCDC88A-210ENST00000468534 DCAF15Q66K64 600 aa6.94□□□□□ -1.3
CCDC88A-210ENST00000468534 CWF19L1Q69YN2 538 aaKnown RBP6.94□□□□□ -1.3
CCDC88A-210ENST00000468534 PPFIBP1Q86W92 1011 aa6.94□□□□□ -1.3
CCDC88A-210ENST00000468534 RELTQ969Z4 430 aa6.94□□□□□ -1.3
CCDC88A-210ENST00000468534 KCNC2Q96PR1 638 aa6.94□□□□□ -1.3
CCDC88A-210ENST00000468534 KRTAP4-2Q9BYR5 136 aa6.94□□□□□ -1.3
CCDC88A-210ENST00000468534 RTP2Q5QGT7 225 aa6.93□□□□□ -1.3
CCDC88A-210ENST00000468534 NOL9Q5SY16 702 aaKnown RBP6.93□□□□□ -1.3
CCDC88A-210ENST00000468534 LDLRAD1Q5T700 205 aa6.93□□□□□ -1.3
CCDC88A-210ENST00000468534 CNKSR3Q6P9H4 555 aa6.93□□□□□ -1.3
CCDC88A-210ENST00000468534 TMEM52Q8NDY8 209 aa6.93□□□□□ -1.3
CCDC88A-210ENST00000468534 BRF1Q92994 677 aa6.93□□□□□ -1.3
CCDC88A-210ENST00000468534 DACT3Q96B18 629 aaPredicted RBP6.93□□□□□ -1.3
CCDC88A-210ENST00000468534 EPB41L4AQ9HCS5 686 aaPredicted RBP6.93□□□□□ -1.3
CCDC88A-210ENST00000468534 ADAMTS20P59510 1910 aa6.93□□□□□ -1.3
CCDC88A-210ENST00000468534 IRS4O14654 1257 aaPredicted RBP6.92□□□□□ -1.3
CCDC88A-210ENST00000468534 ZNF16P17020 682 aaPredicted RBP6.92□□□□□ -1.3
CCDC88A-210ENST00000468534 PMS1P54277 932 aaKnown RBP6.92□□□□□ -1.3
CCDC88A-210ENST00000468534 TMEM62Q0P6H9 643 aa6.92□□□□□ -1.3
CCDC88A-210ENST00000468534 AXDND1Q5T1B0 1012 aaPredicted RBP6.92□□□□□ -1.3
CCDC88A-210ENST00000468534 RPTNQ6XPR3 784 aa6.92□□□□□ -1.3
CCDC88A-210ENST00000468534 RUFY4Q6ZNE9 571 aa6.92□□□□□ -1.3
CCDC88A-210ENST00000468534 LDHDQ86WU2 507 aa6.92□□□□□ -1.3
CCDC88A-210ENST00000468534 JAMLQ86YT9 394 aa6.92□□□□□ -1.3
CCDC88A-210ENST00000468534 TMEFF1Q8IYR6 380 aa6.92□□□□□ -1.3
CCDC88A-210ENST00000468534 SLC12A9Q9BXP2 914 aa6.92□□□□□ -1.3
CCDC88A-210ENST00000468534 TNFRSF12AQ9NP84 129 aa6.92□□□□□ -1.3
CCDC88A-210ENST00000468534 PRR13Q9NZ81 148 aa6.92□□□□□ -1.3
CCDC88A-210ENST00000468534 ACSL6Q9UKU0 697 aa6.92□□□□□ -1.3
CCDC88A-210ENST00000468534 PPT2Q9UMR5 302 aa6.92□□□□□ -1.3
CCDC88A-210ENST00000468534 MSL3P1P0C860 447 aa6.91□□□□□ -1.3
CCDC88A-210ENST00000468534 IMPDH2P12268 514 aa6.91□□□□□ -1.3
CCDC88A-210ENST00000468534 ZYXQ15942 572 aaKnown RBP6.91□□□□□ -1.3
CCDC88A-210ENST00000468534 INTS3Q68E01 1043 aaKnown RBP6.91□□□□□ -1.3
CCDC88A-210ENST00000468534 IGDCC3Q8IVU1 814 aa6.91□□□□□ -1.3
CCDC88A-210ENST00000468534 BACH2Q9BYV9 841 aa6.91□□□□□ -1.3
CCDC88A-210ENST00000468534 SASH1O94885 1247 aa6.9□□□□□ -1.3
CCDC88A-210ENST00000468534 ZNF445P59923 1031 aa6.9□□□□□ -1.3
CCDC88A-210ENST00000468534 ZNF200P98182 395 aaPredicted RBP6.9□□□□□ -1.3
CCDC88A-210ENST00000468534 FANCCQ00597 558 aa6.9□□□□□ -1.3
CCDC88A-210ENST00000468534 MVKQ03426 396 aa6.9□□□□□ -1.3
CCDC88A-210ENST00000468534 NFIXQ14938 502 aa6.9□□□□□ -1.3
CCDC88A-210ENST00000468534 PLEKHN1Q494U1 663 aaPredicted RBP6.9□□□□□ -1.3
CCDC88A-210ENST00000468534 FAM129CQ86XR2 697 aa6.9□□□□□ -1.3
CCDC88A-210ENST00000468534 FEZF2Q8TBJ5 459 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms