RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 MTIF3Q9H2K0 278 aaKnown RBP14.17□□□□□ -0.14
SQSTM1-206ENST00000466342 HELLSQ9NRZ9 838 aa14.17□□□□□ -0.14
SQSTM1-206ENST00000466342 SLC4A4Q9Y6R1 1079 aa14.17□□□□□ -0.14
SQSTM1-206ENST00000466342 COL11A1P12107 1806 aaPredicted RBP14.16□□□□□ -0.14
SQSTM1-206ENST00000466342 A0A0D9SFI3 127 aa14.16□□□□□ -0.14
SQSTM1-206ENST00000466342 FAM86C2PA6NEL3 165 aa14.16□□□□□ -0.14
SQSTM1-206ENST00000466342 MOXD2PA6NHM9 499 aa14.16□□□□□ -0.14
SQSTM1-206ENST00000466342 PRKAB2O43741 272 aa14.16□□□□□ -0.14
SQSTM1-206ENST00000466342 FGBP02675 491 aa14.16□□□□□ -0.14
SQSTM1-206ENST00000466342 FCER1AP12319 257 aa14.16□□□□□ -0.14
SQSTM1-206ENST00000466342 AKR1A1P14550 325 aa14.16□□□□□ -0.14
SQSTM1-206ENST00000466342 GNAT2P19087 354 aa14.16□□□□□ -0.14
SQSTM1-206ENST00000466342 NMIQ13287 307 aaPredicted RBP14.16□□□□□ -0.14
SQSTM1-206ENST00000466342 NCAPG2Q86XI2 1143 aa14.16□□□□□ -0.14
SQSTM1-206ENST00000466342 AMOTL1Q8IY63 956 aa14.16□□□□□ -0.14
SQSTM1-206ENST00000466342 FAM227BQ96M60 508 aa14.16□□□□□ -0.14
SQSTM1-206ENST00000466342 TINF2Q9BSI4 451 aa14.16□□□□□ -0.14
SQSTM1-206ENST00000466342 IL23AQ9NPF7 189 aa14.16□□□□□ -0.14
SQSTM1-206ENST00000466342 ELP1O95163 1332 aa14.15□□□□□ -0.14
SQSTM1-206ENST00000466342 PARP14Q460N5 1801 aa14.15□□□□□ -0.14
SQSTM1-206ENST00000466342 ROBO3Q96MS0 1386 aa14.15□□□□□ -0.14
SQSTM1-206ENST00000466342 USP17L12C9JPN9 530 aa14.15□□□□□ -0.14
SQSTM1-206ENST00000466342 USP17L21D6R901 530 aa14.15□□□□□ -0.14
SQSTM1-206ENST00000466342 ZNF865P0CJ78 1059 aaPredicted RBP14.15□□□□□ -0.14
SQSTM1-206ENST00000466342 GUCY1A2P33402 732 aa14.15□□□□□ -0.14
SQSTM1-206ENST00000466342 SEPT2Q15019 361 aa14.15□□□□□ -0.14
SQSTM1-206ENST00000466342 KCNA10Q16322 511 aa14.15□□□□□ -0.14
SQSTM1-206ENST00000466342 MCMDC2Q4G0Z9 681 aa14.15□□□□□ -0.14
SQSTM1-206ENST00000466342 C12orf60Q5U649 245 aa14.15□□□□□ -0.14
SQSTM1-206ENST00000466342 PPP2R2DQ66LE6 453 aa14.15□□□□□ -0.14
SQSTM1-206ENST00000466342 MB21D1Q8N884 522 aa14.15□□□□□ -0.14
SQSTM1-206ENST00000466342 KLHDC9Q8NEP7 349 aa14.15□□□□□ -0.14
SQSTM1-206ENST00000466342 CCDC17Q96LX7 622 aa14.15□□□□□ -0.14
SQSTM1-206ENST00000466342 PPP1R12CQ9BZL4 782 aa14.15□□□□□ -0.14
SQSTM1-206ENST00000466342 DIAPH3Q9NSV4 1193 aa14.15□□□□□ -0.14
SQSTM1-206ENST00000466342 MTCH2Q9Y6C9 303 aa14.15□□□□□ -0.14
SQSTM1-206ENST00000466342 LAMA4Q16363 1823 aa14.15□□□□□ -0.14
SQSTM1-206ENST00000466342 GSG1L2A8MUP6 293 aa14.14□□□□□ -0.15
SQSTM1-206ENST00000466342 PRR33A8MZF0 331 aa14.14□□□□□ -0.15
SQSTM1-206ENST00000466342 MPHOSPH10O00566 681 aaKnown RBP14.14□□□□□ -0.15
SQSTM1-206ENST00000466342 CYP2D6P10635 497 aa14.14□□□□□ -0.15
SQSTM1-206ENST00000466342 TAL1P17542 331 aaPredicted RBP14.14□□□□□ -0.15
SQSTM1-206ENST00000466342 EVX2Q03828 476 aa14.14□□□□□ -0.15
SQSTM1-206ENST00000466342 PLS1Q14651 629 aa14.14□□□□□ -0.15
SQSTM1-206ENST00000466342 BMP2KLQ5H9B9 411 aa14.14□□□□□ -0.15
SQSTM1-206ENST00000466342 CCSAPQ6IQ19 270 aaPredicted RBP14.14□□□□□ -0.15
SQSTM1-206ENST00000466342 GIMAP6Q6P9H5 292 aa14.14□□□□□ -0.15
SQSTM1-206ENST00000466342 TMEM179Q6ZVK1 233 aa14.14□□□□□ -0.15
SQSTM1-206ENST00000466342 GLT1D1Q96MS3 346 aa14.14□□□□□ -0.15
SQSTM1-206ENST00000466342 PATL2C9JE40 543 aaKnown RBP14.13□□□□□ -0.15
SQSTM1-206ENST00000466342 GTPBP6O43824 516 aaPredicted RBP14.13□□□□□ -0.15
SQSTM1-206ENST00000466342 CWC27Q6UX04 472 aaKnown RBP14.13□□□□□ -0.15
SQSTM1-206ENST00000466342 DYNLL2Q96FJ2 89 aa14.13□□□□□ -0.15
SQSTM1-206ENST00000466342 EPB41L4AQ9HCS5 686 aaPredicted RBP14.13□□□□□ -0.15
SQSTM1-206ENST00000466342 DIS3Q9Y2L1 958 aaKnown RBP14.13□□□□□ -0.15
SQSTM1-206ENST00000466342 PCDHA11Q9Y5I1 949 aa14.13□□□□□ -0.15
SQSTM1-206ENST00000466342 CCDC171Q6TFL3 1326 aa14.13□□□□□ -0.15
SQSTM1-206ENST00000466342 SYNRGQ9UMZ2 1314 aa14.13□□□□□ -0.15
SQSTM1-206ENST00000466342 ARVCFO00192 962 aa14.12□□□□□ -0.15
SQSTM1-206ENST00000466342 TLR3O15455 904 aaKnown RBP14.12□□□□□ -0.15
SQSTM1-206ENST00000466342 MYOGP15173 224 aa14.12□□□□□ -0.15
SQSTM1-206ENST00000466342 DSG3P32926 999 aa14.12□□□□□ -0.15
SQSTM1-206ENST00000466342 CYP2C18P33260 490 aa14.12□□□□□ -0.15
SQSTM1-206ENST00000466342 CDK8P49336 464 aa14.12□□□□□ -0.15
SQSTM1-206ENST00000466342 RABGGTBP53611 331 aa14.12□□□□□ -0.15
SQSTM1-206ENST00000466342 MFAP1P55081 439 aaKnown RBP14.12□□□□□ -0.15
SQSTM1-206ENST00000466342 ZNF792Q3KQV3 632 aa14.12□□□□□ -0.15
SQSTM1-206ENST00000466342 SBK1Q52WX2 424 aa14.12□□□□□ -0.15
SQSTM1-206ENST00000466342 CTR9Q6PD62 1173 aa14.12□□□□□ -0.15
SQSTM1-206ENST00000466342 C16orf86Q6ZW13 317 aa14.12□□□□□ -0.15
SQSTM1-206ENST00000466342 OTOP2Q7RTS6 562 aa14.12□□□□□ -0.15
SQSTM1-206ENST00000466342 ZNF589Q86UQ0 364 aaPredicted RBP14.12□□□□□ -0.15
SQSTM1-206ENST00000466342 HLA-CQ95604 372 aa14.12□□□□□ -0.15
SQSTM1-206ENST00000466342 VTI1AQ96AJ9 217 aa14.12□□□□□ -0.15
SQSTM1-206ENST00000466342 LENG1Q96BZ8 264 aaPredicted RBP14.12□□□□□ -0.15
SQSTM1-206ENST00000466342 TANGO6Q9C0B7 1094 aa14.12□□□□□ -0.15
SQSTM1-206ENST00000466342 ARPP21Q9UBL0 812 aaPredicted RBP14.12□□□□□ -0.15
SQSTM1-206ENST00000466342 RAD50Q92878 1312 aa14.12□□□□□ -0.15
SQSTM1-206ENST00000466342 WDFY4Q6ZS81 3184 aa14.12□□□□□ -0.15
SQSTM1-206ENST00000466342 A0A1W2PRG0 241 aa14.11□□□□□ -0.15
SQSTM1-206ENST00000466342 RFXAPO00287 272 aa14.11□□□□□ -0.15
SQSTM1-206ENST00000466342 FOXP2O15409 715 aa14.11□□□□□ -0.15
SQSTM1-206ENST00000466342 SLC25A27O95847 323 aa14.11□□□□□ -0.15
SQSTM1-206ENST00000466342 APPP05067 770 aa14.11□□□□□ -0.15
SQSTM1-206ENST00000466342 CHMLP26374 656 aa14.11□□□□□ -0.15
SQSTM1-206ENST00000466342 TDO2P48775 406 aa14.11□□□□□ -0.15
SQSTM1-206ENST00000466342 FAM126BQ8IXS8 530 aa14.11□□□□□ -0.15
SQSTM1-206ENST00000466342 IFNL3Q8IZI9 196 aa14.11□□□□□ -0.15
SQSTM1-206ENST00000466342 PCSK9Q8NBP7 692 aaKnown RBP14.11□□□□□ -0.15
SQSTM1-206ENST00000466342 NACAP1Q9BZK3 213 aa14.11□□□□□ -0.15
SQSTM1-206ENST00000466342 SH2D4AQ9H788 454 aa14.11□□□□□ -0.15
SQSTM1-206ENST00000466342 ARHGEF10LQ9HCE6 1279 aa14.11□□□□□ -0.15
SQSTM1-206ENST00000466342 CD320Q9NPF0 282 aa14.11□□□□□ -0.15
SQSTM1-206ENST00000466342 FAM184BQ9ULE4 1060 aa14.11□□□□□ -0.15
SQSTM1-206ENST00000466342 CNPY2Q9Y2B0 182 aa14.11□□□□□ -0.15
SQSTM1-206ENST00000466342 TMX2Q9Y320 296 aa14.11□□□□□ -0.15
SQSTM1-206ENST00000466342 SLC4A7Q9Y6M7 1214 aa14.11□□□□□ -0.15
SQSTM1-206ENST00000466342 CYP2D7A0A087X1C5 515 aa14.1□□□□□ -0.15
SQSTM1-206ENST00000466342 A0A0U1RQG5 324 aaPredicted RBP14.1□□□□□ -0.15
SQSTM1-206ENST00000466342 DUSP11O75319 330 aaKnown RBP14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms