RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 ZBED4O75132 1171 aa20.82■□□□□ 0.92
COL7A1-205ENST00000465238 REC8O95072 547 aa20.82■□□□□ 0.92
COL7A1-205ENST00000465238 MYCNP04198 464 aaPredicted RBP20.82■□□□□ 0.92
COL7A1-205ENST00000465238 RARBP10826 455 aa20.82■□□□□ 0.92
COL7A1-205ENST00000465238 TRDNQ13061 729 aa20.82■□□□□ 0.92
COL7A1-205ENST00000465238 LRRC41Q15345 812 aa20.82■□□□□ 0.92
COL7A1-205ENST00000465238 SLC39A5Q6ZMH5 540 aa20.82■□□□□ 0.92
COL7A1-205ENST00000465238 GMCL1P1Q8NEA9 526 aa20.82■□□□□ 0.92
COL7A1-205ENST00000465238 CTDP1Q9Y5B0 961 aaPredicted RBP20.82■□□□□ 0.92
COL7A1-205ENST00000465238 NEDD4P46934 1319 aa20.81■□□□□ 0.92
COL7A1-205ENST00000465238 MSL3Q8N5Y2 521 aaKnown RBP20.81■□□□□ 0.92
COL7A1-205ENST00000465238 FEM1BQ9UK73 627 aa20.81■□□□□ 0.92
COL7A1-205ENST00000465238 ATP11BQ9Y2G3 1177 aa20.81■□□□□ 0.92
COL7A1-205ENST00000465238 B4E1Z4 1266 aa20.8■□□□□ 0.92
COL7A1-205ENST00000465238 KDM4AO75164 1064 aa20.8■□□□□ 0.92
COL7A1-205ENST00000465238 ADCYAP1R1P41586 468 aa20.8■□□□□ 0.92
COL7A1-205ENST00000465238 SNX17Q15036 470 aa20.8■□□□□ 0.92
COL7A1-205ENST00000465238 RNF20Q5VTR2 975 aa20.8■□□□□ 0.92
COL7A1-205ENST00000465238 KIFC2Q96AC6 838 aa20.8■□□□□ 0.92
COL7A1-205ENST00000465238 DDX11Q96FC9 970 aa20.8■□□□□ 0.92
COL7A1-205ENST00000465238 XPNPEP3Q9NQH7 507 aa20.8■□□□□ 0.92
COL7A1-205ENST00000465238 TCP11L1Q9NUJ3 509 aa20.8■□□□□ 0.92
COL7A1-205ENST00000465238 STX8Q9UNK0 236 aa20.8■□□□□ 0.92
COL7A1-205ENST00000465238 CNPY2Q9Y2B0 182 aa20.8■□□□□ 0.92
COL7A1-205ENST00000465238 COL6A3P12111 3177 aa20.8■□□□□ 0.92
COL7A1-205ENST00000465238 E7EWF7 191 aa20.79■□□□□ 0.92
COL7A1-205ENST00000465238 NMT2O60551 498 aa20.79■□□□□ 0.92
COL7A1-205ENST00000465238 AKR1A1P14550 325 aa20.79■□□□□ 0.92
COL7A1-205ENST00000465238 NECTIN1Q15223 517 aa20.79■□□□□ 0.92
COL7A1-205ENST00000465238 C1orf53Q5VUE5 145 aa20.79■□□□□ 0.92
COL7A1-205ENST00000465238 CREB3L3Q68CJ9 461 aa20.79■□□□□ 0.92
COL7A1-205ENST00000465238 RNF180Q86T96 592 aa20.79■□□□□ 0.92
COL7A1-205ENST00000465238 CPXCR1Q8N123 301 aa20.79■□□□□ 0.92
COL7A1-205ENST00000465238 LRRC47Q8N1G4 583 aaKnown RBP20.79■□□□□ 0.92
COL7A1-205ENST00000465238 SLC38A10Q9HBR0 1119 aa20.79■□□□□ 0.92
COL7A1-205ENST00000465238 IL17RBQ9NRM6 502 aa20.79■□□□□ 0.92
COL7A1-205ENST00000465238 RIPK3Q9Y572 518 aa20.79■□□□□ 0.92
COL7A1-205ENST00000465238 LAMA2P24043 3122 aaKnown RBP20.78■□□□□ 0.92
COL7A1-205ENST00000465238 DNAJC25-GNG10A0A024R161 153 aa20.78■□□□□ 0.92
COL7A1-205ENST00000465238 SLC27A2O14975 620 aa20.78■□□□□ 0.92
COL7A1-205ENST00000465238 ZNF865P0CJ78 1059 aaPredicted RBP20.78■□□□□ 0.92
COL7A1-205ENST00000465238 FDX1P10109 184 aa20.78■□□□□ 0.92
COL7A1-205ENST00000465238 BMP3P12645 472 aa20.78■□□□□ 0.92
COL7A1-205ENST00000465238 TAL1P17542 331 aaPredicted RBP20.78■□□□□ 0.92
COL7A1-205ENST00000465238 OAZ1P54368 228 aa20.78■□□□□ 0.92
COL7A1-205ENST00000465238 CCDC178Q5BJE1 867 aa20.78■□□□□ 0.92
COL7A1-205ENST00000465238 SLFN13Q68D06 897 aa20.78■□□□□ 0.92
COL7A1-205ENST00000465238 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.78■□□□□ 0.92
COL7A1-205ENST00000465238 RALYLQ86SE5 291 aaKnown RBP20.78■□□□□ 0.92
COL7A1-205ENST00000465238 IQCA1Q86XH1 822 aa20.78■□□□□ 0.92
COL7A1-205ENST00000465238 NCOA7Q8NI08 942 aa20.78■□□□□ 0.92
COL7A1-205ENST00000465238 FERMT2Q96AC1 680 aa20.78■□□□□ 0.92
COL7A1-205ENST00000465238 FBXO40Q9UH90 709 aa20.78■□□□□ 0.92
COL7A1-205ENST00000465238 PHF24Q9UPV7 400 aa20.78■□□□□ 0.92
COL7A1-205ENST00000465238 LTBP2Q14767 1821 aa20.78■□□□□ 0.92
COL7A1-205ENST00000465238 SYNGAP1Q96PV0 1343 aa20.78■□□□□ 0.92
COL7A1-205ENST00000465238 SLC4A3P48751 1232 aa20.77■□□□□ 0.92
COL7A1-205ENST00000465238 MAMDC4Q6UXC1 1216 aa20.77■□□□□ 0.92
COL7A1-205ENST00000465238 ZNF467Q7Z7K2 595 aaPredicted RBP20.77■□□□□ 0.92
COL7A1-205ENST00000465238 DEFB123Q8N688 67 aa20.77■□□□□ 0.92
COL7A1-205ENST00000465238 RAVER2Q9HCJ3 691 aaKnown RBP20.77■□□□□ 0.92
COL7A1-205ENST00000465238 ZSWIM5Q9P217 1185 aa20.77■□□□□ 0.92
COL7A1-205ENST00000465238 TRIM60Q495X7 471 aa20.76■□□□□ 0.91
COL7A1-205ENST00000465238 CHST13Q8NET6 341 aa20.76■□□□□ 0.91
COL7A1-205ENST00000465238 GMCL1Q96IK5 515 aa20.76■□□□□ 0.91
COL7A1-205ENST00000465238 TTC14Q96N46 770 aa20.76■□□□□ 0.91
COL7A1-205ENST00000465238 ZKSCAN3Q9BRR0 538 aa20.76■□□□□ 0.91
COL7A1-205ENST00000465238 UBAC1Q9BSL1 405 aa20.76■□□□□ 0.91
COL7A1-205ENST00000465238 TAF6LQ9Y6J9 622 aa20.76■□□□□ 0.91
COL7A1-205ENST00000465238 EIF5BO60841 1220 aaKnown RBP20.75■□□□□ 0.91
COL7A1-205ENST00000465238 PGK1P00558 417 aa20.75■□□□□ 0.91
COL7A1-205ENST00000465238 TOP1P11387 765 aaKnown RBP20.75■□□□□ 0.91
COL7A1-205ENST00000465238 STAT2P52630 851 aa20.75■□□□□ 0.91
COL7A1-205ENST00000465238 STOX1Q6ZVD7 989 aa20.75■□□□□ 0.91
COL7A1-205ENST00000465238 ANKRD35Q8N283 1001 aa20.75■□□□□ 0.91
COL7A1-205ENST00000465238 CHURC1Q8WUH1 139 aa20.75■□□□□ 0.91
COL7A1-205ENST00000465238 ZSCAN10Q96SZ4 725 aaPredicted RBP20.75■□□□□ 0.91
COL7A1-205ENST00000465238 PRDM5Q9NQX1 630 aaPredicted RBP20.75■□□□□ 0.91
COL7A1-205ENST00000465238 FAM184BQ9ULE4 1060 aa20.75■□□□□ 0.91
COL7A1-205ENST00000465238 TMEM232C9JQI7 657 aa20.74■□□□□ 0.91
COL7A1-205ENST00000465238 EPB41L2O43491 1005 aaKnown RBP20.74■□□□□ 0.91
COL7A1-205ENST00000465238 SNAI1O95863 264 aaPredicted RBP20.74■□□□□ 0.91
COL7A1-205ENST00000465238 NOVP48745 357 aa20.74■□□□□ 0.91
COL7A1-205ENST00000465238 FAM160B2Q86V87 743 aa20.74■□□□□ 0.91
COL7A1-205ENST00000465238 DGKHQ86XP1 1220 aa20.74■□□□□ 0.91
COL7A1-205ENST00000465238 PDLIM7Q9NR12 457 aa20.74■□□□□ 0.91
COL7A1-205ENST00000465238 ISY1Q9ULR0 285 aaKnown RBP20.74■□□□□ 0.91
COL7A1-205ENST00000465238 ADAMTS4O75173 837 aa20.73■□□□□ 0.91
COL7A1-205ENST00000465238 SLC1A4P43007 532 aa20.73■□□□□ 0.91
COL7A1-205ENST00000465238 TLE2Q04725 743 aa20.73■□□□□ 0.91
COL7A1-205ENST00000465238 Q7L0L9 218 aa20.73■□□□□ 0.91
COL7A1-205ENST00000465238 CYB5R4Q7L1T6 521 aa20.73■□□□□ 0.91
COL7A1-205ENST00000465238 TMEM47Q9BQJ4 181 aa20.73■□□□□ 0.91
COL7A1-205ENST00000465238 TSEN34Q9BSV6 310 aaKnown RBP20.73■□□□□ 0.91
COL7A1-205ENST00000465238 ZHX1Q9UKY1 873 aaPredicted RBP20.73■□□□□ 0.91
COL7A1-205ENST00000465238 MCM3APO60318 1980 aa20.73■□□□□ 0.91
COL7A1-205ENST00000465238 A0A1W2PQ45 241 aaPredicted RBP20.72■□□□□ 0.91
COL7A1-205ENST00000465238 A0A1W2PQY0 241 aa20.72■□□□□ 0.91
COL7A1-205ENST00000465238 ERICH2A1L162 156 aa20.72■□□□□ 0.91
COL7A1-205ENST00000465238 PLA2G6O60733 806 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms