RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 GGA1Q9UJY5 639 aa20.89■□□□□ 0.94
CCDC88B-204ENST00000463837 BUB1O43683 1085 aa20.89■□□□□ 0.93
CCDC88B-204ENST00000463837 N4BP1O75113 896 aaKnown RBP20.89■□□□□ 0.93
CCDC88B-204ENST00000463837 EIF6P56537 245 aaKnown RBP20.89■□□□□ 0.93
CCDC88B-204ENST00000463837 ZNF658Q5TYW1 1059 aaPredicted RBP20.89■□□□□ 0.93
CCDC88B-204ENST00000463837 ALS2CLQ60I27 953 aa20.89■□□□□ 0.93
CCDC88B-204ENST00000463837 AK8Q96MA6 479 aa20.89■□□□□ 0.93
CCDC88B-204ENST00000463837 UIMC1Q96RL1 719 aa20.89■□□□□ 0.93
CCDC88B-204ENST00000463837 RIPOR2Q9Y4F9 1068 aa20.89■□□□□ 0.93
CCDC88B-204ENST00000463837 FAM170AA1A519 330 aa20.89■□□□□ 0.93
CCDC88B-204ENST00000463837 PTPN21Q16825 1174 aa20.89■□□□□ 0.93
CCDC88B-204ENST00000463837 ZBTB38Q8NAP3 1195 aaPredicted RBP20.89■□□□□ 0.93
CCDC88B-204ENST00000463837 IWS1Q96ST2 819 aa20.89■□□□□ 0.93
CCDC88B-204ENST00000463837 CFAP74Q9C0B2 1584 aa20.89■□□□□ 0.93
CCDC88B-204ENST00000463837 PDE6BP35913 854 aa20.89■□□□□ 0.93
CCDC88B-204ENST00000463837 CNOT6LQ96LI5 555 aaKnown RBP20.89■□□□□ 0.93
CCDC88B-204ENST00000463837 BBOF1Q8ND07 529 aa20.88■□□□□ 0.93
CCDC88B-204ENST00000463837 GUCY2DQ02846 1103 aa20.88■□□□□ 0.93
CCDC88B-204ENST00000463837 ZNF354CQ86Y25 554 aa20.88■□□□□ 0.93
CCDC88B-204ENST00000463837 MIPOL1Q8TD10 442 aa20.88■□□□□ 0.93
CCDC88B-204ENST00000463837 ATG3Q9NT62 314 aa20.88■□□□□ 0.93
CCDC88B-204ENST00000463837 KCNG1Q9UIX4 513 aa20.88■□□□□ 0.93
CCDC88B-204ENST00000463837 KIF1BO60333 1816 aa20.88■□□□□ 0.93
CCDC88B-204ENST00000463837 KIF3CO14782 793 aa20.88■□□□□ 0.93
CCDC88B-204ENST00000463837 SEMA3EO15041 775 aa20.88■□□□□ 0.93
CCDC88B-204ENST00000463837 ITIH3Q06033 890 aa20.88■□□□□ 0.93
CCDC88B-204ENST00000463837 SUPT20HQ8NEM7 779 aa20.88■□□□□ 0.93
CCDC88B-204ENST00000463837 ABCC12Q96J65 1359 aa20.88■□□□□ 0.93
CCDC88B-204ENST00000463837 ABCA8O94911 1581 aa20.88■□□□□ 0.93
CCDC88B-204ENST00000463837 TMEM2Q9UHN6 1383 aa20.88■□□□□ 0.93
CCDC88B-204ENST00000463837 SNX16P57768 344 aa20.88■□□□□ 0.93
CCDC88B-204ENST00000463837 ARHGEF10LQ9HCE6 1279 aa20.88■□□□□ 0.93
CCDC88B-204ENST00000463837 PHLDB3Q6NSJ2 640 aa20.87■□□□□ 0.93
CCDC88B-204ENST00000463837 PPP1R21Q6ZMI0 780 aa20.87■□□□□ 0.93
CCDC88B-204ENST00000463837 GPBP1Q86WP2 473 aa20.87■□□□□ 0.93
CCDC88B-204ENST00000463837 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.87■□□□□ 0.93
CCDC88B-204ENST00000463837 PLEKHG1Q9ULL1 1385 aa20.87■□□□□ 0.93
CCDC88B-204ENST00000463837 BCAP29Q9UHQ4 241 aa20.87■□□□□ 0.93
CCDC88B-204ENST00000463837 PHKG2P15735 406 aa20.87■□□□□ 0.93
CCDC88B-204ENST00000463837 TPD52P55327 224 aaPredicted RBP20.87■□□□□ 0.93
CCDC88B-204ENST00000463837 IRX4P78413 519 aa20.87■□□□□ 0.93
CCDC88B-204ENST00000463837 PICK1Q9NRD5 415 aa20.87■□□□□ 0.93
CCDC88B-204ENST00000463837 CA8P35219 290 aa20.87■□□□□ 0.93
CCDC88B-204ENST00000463837 SP4Q02446 784 aa20.87■□□□□ 0.93
CCDC88B-204ENST00000463837 PTPROQ16827 1216 aa20.87■□□□□ 0.93
CCDC88B-204ENST00000463837 OSBPL5Q9H0X9 879 aaPredicted RBP20.87■□□□□ 0.93
CCDC88B-204ENST00000463837 TLR7Q9NYK1 1049 aaKnown RBP20.87■□□□□ 0.93
CCDC88B-204ENST00000463837 REREQ9P2R6 1566 aa20.87■□□□□ 0.93
CCDC88B-204ENST00000463837 CCDC87Q9NVE4 849 aa20.86■□□□□ 0.93
CCDC88B-204ENST00000463837 BACH1O14867 736 aa20.86■□□□□ 0.93
CCDC88B-204ENST00000463837 POLR2FP61218 127 aaKnown RBP20.86■□□□□ 0.93
CCDC88B-204ENST00000463837 KCTD16Q68DU8 428 aa20.86■□□□□ 0.93
CCDC88B-204ENST00000463837 SLFN12Q8IYM2 578 aa20.86■□□□□ 0.93
CCDC88B-204ENST00000463837 USP17L12C9JPN9 530 aa20.86■□□□□ 0.93
CCDC88B-204ENST00000463837 USP17L21D6R901 530 aa20.86■□□□□ 0.93
CCDC88B-204ENST00000463837 MMP1P03956 469 aa20.86■□□□□ 0.93
CCDC88B-204ENST00000463837 FAM47AQ5JRC9 791 aa20.86■□□□□ 0.93
CCDC88B-204ENST00000463837 CCDC197Q8NCU1 140 aa20.86■□□□□ 0.93
CCDC88B-204ENST00000463837 PANK4Q9NVE7 773 aa20.86■□□□□ 0.93
CCDC88B-204ENST00000463837 JRKLQ9Y4A0 524 aa20.86■□□□□ 0.93
CCDC88B-204ENST00000463837 PCDHB13Q9Y5F0 798 aa20.86■□□□□ 0.93
CCDC88B-204ENST00000463837 ENC1O14682 589 aa20.86■□□□□ 0.93
CCDC88B-204ENST00000463837 STRN3Q13033 797 aa20.86■□□□□ 0.93
CCDC88B-204ENST00000463837 CASP8Q14790 479 aa20.86■□□□□ 0.93
CCDC88B-204ENST00000463837 H0YIN7 160 aa20.85■□□□□ 0.93
CCDC88B-204ENST00000463837 SLC1A4P43007 532 aa20.85■□□□□ 0.93
CCDC88B-204ENST00000463837 THAP9Q9H5L6 903 aa20.85■□□□□ 0.93
CCDC88B-204ENST00000463837 ACTR5Q9H9F9 607 aaPredicted RBP20.85■□□□□ 0.93
CCDC88B-204ENST00000463837 LRRC24Q50LG9 513 aa20.85■□□□□ 0.93
CCDC88B-204ENST00000463837 TMOD4Q9NZQ9 345 aa20.85■□□□□ 0.93
CCDC88B-204ENST00000463837 SRPRBQ9Y5M8 271 aaKnown RBP20.85■□□□□ 0.93
CCDC88B-204ENST00000463837 BCORL1Q5H9F3 1711 aa20.85■□□□□ 0.93
CCDC88B-204ENST00000463837 PHBP35232 272 aa20.85■□□□□ 0.93
CCDC88B-204ENST00000463837 TECP42680 631 aa20.85■□□□□ 0.93
CCDC88B-204ENST00000463837 BRDTQ58F21 947 aaPredicted RBP20.85■□□□□ 0.93
CCDC88B-204ENST00000463837 P2RX5Q93086 422 aa20.85■□□□□ 0.93
CCDC88B-204ENST00000463837 DDX23Q9BUQ8 820 aaKnown RBP20.85■□□□□ 0.93
CCDC88B-204ENST00000463837 GJA3Q9Y6H8 435 aa20.85■□□□□ 0.93
CCDC88B-204ENST00000463837 STK10O94804 968 aaKnown RBP20.85■□□□□ 0.93
CCDC88B-204ENST00000463837 BIN2Q9UBW5 565 aaPredicted RBP20.85■□□□□ 0.93
CCDC88B-204ENST00000463837 USTQ9Y2C2 406 aa20.85■□□□□ 0.93
CCDC88B-204ENST00000463837 USH1CQ9Y6N9 552 aa20.85■□□□□ 0.93
CCDC88B-204ENST00000463837 TBC1D8O95759 1140 aa20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 IFNAR1P17181 557 aa20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 MAP3K21Q5TCX8 1036 aa20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 ZFYVE16Q7Z3T8 1539 aa20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 GCKP35557 465 aa20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 FAM26FQ5R3K3 315 aa20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 DNAJC10Q8IXB1 793 aa20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 PNMA1Q8ND90 353 aa20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 TBC1D22AQ8WUA7 517 aa20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 ORAI2Q96SN7 254 aa20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 DPH5Q9H2P9 285 aa20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 CNOT10Q9H9A5 744 aaKnown RBP20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 SUN1O94901 812 aa20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 HARSP12081 509 aaKnown RBP20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 ZBED6P86452 979 aa20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 SDCCAG8Q86SQ7 713 aaPredicted RBP20.84■□□□□ 0.93
CCDC88B-204ENST00000463837 VPS37BQ9H9H4 285 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms