RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 GMCL1Q96IK5 515 aa18.24■□□□□ 0.51
SKA3-204ENST00000462482 RNPC3Q96LT9 517 aaKnown RBP18.24■□□□□ 0.51
SKA3-204ENST00000462482 MCCP23508 829 aa18.23■□□□□ 0.51
SKA3-204ENST00000462482 CCDC144BQ3MJ40 725 aa18.23■□□□□ 0.51
SKA3-204ENST00000462482 CCDC174Q6PII3 467 aa18.23■□□□□ 0.51
SKA3-204ENST00000462482 ARMCX2Q7L311 632 aa18.23■□□□□ 0.51
SKA3-204ENST00000462482 KLHDC9Q8NEP7 349 aa18.23■□□□□ 0.51
SKA3-204ENST00000462482 OTUD7AQ8TE49 926 aaPredicted RBP18.23■□□□□ 0.51
SKA3-204ENST00000462482 MYH8P13535 1937 aa18.23■□□□□ 0.51
SKA3-204ENST00000462482 FRMPD3Q5JV73 1810 aa18.23■□□□□ 0.51
SKA3-204ENST00000462482 ELP1O95163 1332 aa18.23■□□□□ 0.51
SKA3-204ENST00000462482 ASB14A6NK59 587 aa18.22■□□□□ 0.51
SKA3-204ENST00000462482 RANBP6O60518 1105 aaKnown RBP18.22■□□□□ 0.51
SKA3-204ENST00000462482 CST5P28325 142 aaPredicted RBP18.22■□□□□ 0.51
SKA3-204ENST00000462482 GNASQ5JWF2 1037 aa18.22■□□□□ 0.51
SKA3-204ENST00000462482 ANKRD45Q5TZF3 282 aa18.22■□□□□ 0.51
SKA3-204ENST00000462482 CHMP4CQ96CF2 233 aa18.22■□□□□ 0.51
SKA3-204ENST00000462482 EVI5LQ96CN4 794 aa18.22■□□□□ 0.51
SKA3-204ENST00000462482 GUCD1Q96NT3 240 aa18.22■□□□□ 0.51
SKA3-204ENST00000462482 TOMM22Q9NS69 142 aa18.22■□□□□ 0.51
SKA3-204ENST00000462482 RNF146Q9NTX7 359 aa18.22■□□□□ 0.51
SKA3-204ENST00000462482 LAMA3Q16787 3333 aa18.21■□□□□ 0.51
SKA3-204ENST00000462482 TLR3O15455 904 aaKnown RBP18.21■□□□□ 0.51
SKA3-204ENST00000462482 PLA2G6O60733 806 aa18.21■□□□□ 0.51
SKA3-204ENST00000462482 ASGR1P07306 291 aa18.21■□□□□ 0.51
SKA3-204ENST00000462482 ALAS1P13196 640 aa18.21■□□□□ 0.51
SKA3-204ENST00000462482 CTDSPL2Q05D32 466 aa18.21■□□□□ 0.51
SKA3-204ENST00000462482 RCSD1Q6JBY9 416 aa18.21■□□□□ 0.51
SKA3-204ENST00000462482 CCDC144CPQ8IYA2 1237 aa18.21■□□□□ 0.51
SKA3-204ENST00000462482 TRERF1Q96PN7 1200 aa18.21■□□□□ 0.51
SKA3-204ENST00000462482 SEMA6BQ9H3T3 888 aa18.21■□□□□ 0.51
SKA3-204ENST00000462482 A0A0U1RQG5 324 aaPredicted RBP18.2■□□□□ 0.5
SKA3-204ENST00000462482 GJA9P57773 515 aa18.2■□□□□ 0.5
SKA3-204ENST00000462482 FAAP100Q0VG06 881 aa18.2■□□□□ 0.5
SKA3-204ENST00000462482 CCDC96Q2M329 555 aa18.2■□□□□ 0.5
SKA3-204ENST00000462482 KCTD1Q719H9 257 aa18.2■□□□□ 0.5
SKA3-204ENST00000462482 AGBL1Q96MI9 1066 aa18.2■□□□□ 0.5
SKA3-204ENST00000462482 CDX2Q99626 313 aaPredicted RBP18.2■□□□□ 0.5
SKA3-204ENST00000462482 AP5M1Q9H0R1 490 aa18.2■□□□□ 0.5
SKA3-204ENST00000462482 UPF3AQ9H1J1 476 aaKnown RBP18.2■□□□□ 0.5
SKA3-204ENST00000462482 MTMR7Q9Y216 660 aa18.2■□□□□ 0.5
SKA3-204ENST00000462482 ZEB2O60315 1214 aa18.19■□□□□ 0.5
SKA3-204ENST00000462482 TIMP1P01033 207 aa18.19■□□□□ 0.5
SKA3-204ENST00000462482 ITGB8P26012 769 aa18.19■□□□□ 0.5
SKA3-204ENST00000462482 RRP1P56182 461 aaKnown RBP18.19■□□□□ 0.5
SKA3-204ENST00000462482 CNTN2Q02246 1040 aa18.19■□□□□ 0.5
SKA3-204ENST00000462482 TNFAIP2Q03169 654 aa18.19■□□□□ 0.5
SKA3-204ENST00000462482 CCSAPQ6IQ19 270 aaPredicted RBP18.19■□□□□ 0.5
SKA3-204ENST00000462482 CCDC129Q6ZRS4 1044 aa18.19■□□□□ 0.5
SKA3-204ENST00000462482 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.19■□□□□ 0.5
SKA3-204ENST00000462482 FAM133AQ8N9E0 248 aa18.19■□□□□ 0.5
SKA3-204ENST00000462482 A1CFQ9NQ94 594 aaKnown RBP18.19■□□□□ 0.5
SKA3-204ENST00000462482 HELLSQ9NRZ9 838 aa18.19■□□□□ 0.5
SKA3-204ENST00000462482 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.19■□□□□ 0.5
SKA3-204ENST00000462482 MYH7P12883 1935 aa18.19■□□□□ 0.5
SKA3-204ENST00000462482 TMEM265A0A087WTH1 108 aa18.18■□□□□ 0.5
SKA3-204ENST00000462482 MYADML2A6NDP7 307 aa18.18■□□□□ 0.5
SKA3-204ENST00000462482 ARVCFO00192 962 aa18.18■□□□□ 0.5
SKA3-204ENST00000462482 PPIGQ13427 754 aaKnown RBP eCLIP18.18■□□□□ 0.5
SKA3-204ENST00000462482 DCAF4Q8WV16 495 aa18.18■□□□□ 0.5
SKA3-204ENST00000462482 ANAPC4Q9UJX5 808 aa18.18■□□□□ 0.5
SKA3-204ENST00000462482 CCPG1Q9ULG6 757 aa18.18■□□□□ 0.5
SKA3-204ENST00000462482 PRR12Q9ULL5 1215 aa18.18■□□□□ 0.5
SKA3-204ENST00000462482 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.17■□□□□ 0.5
SKA3-204ENST00000462482 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.17■□□□□ 0.5
SKA3-204ENST00000462482 ORC4O43929 436 aa18.17■□□□□ 0.5
SKA3-204ENST00000462482 CABYRO75952 493 aa18.17■□□□□ 0.5
SKA3-204ENST00000462482 RRP12Q5JTH9 1297 aaKnown RBP18.17■□□□□ 0.5
SKA3-204ENST00000462482 MFSD5Q6N075 450 aa18.17■□□□□ 0.5
SKA3-204ENST00000462482 NSMFQ6X4W1 530 aa18.17■□□□□ 0.5
SKA3-204ENST00000462482 TICAM2Q86XR7 235 aa18.17■□□□□ 0.5
SKA3-204ENST00000462482 TMEM199Q8N511 208 aa18.17■□□□□ 0.5
SKA3-204ENST00000462482 FGD4Q96M96 766 aa18.17■□□□□ 0.5
SKA3-204ENST00000462482 GREB1LQ9C091 1923 aaPredicted RBP18.17■□□□□ 0.5
SKA3-204ENST00000462482 ZNF536O15090 1300 aa18.17■□□□□ 0.5
SKA3-204ENST00000462482 NMT2O60551 498 aa18.16■□□□□ 0.5
SKA3-204ENST00000462482 EPHB4P54760 987 aa18.16■□□□□ 0.5
SKA3-204ENST00000462482 ALX1Q15699 326 aa18.16■□□□□ 0.5
SKA3-204ENST00000462482 MCMDC2Q4G0Z9 681 aa18.16■□□□□ 0.5
SKA3-204ENST00000462482 MAFAQ8NHW3 353 aaPredicted RBP18.16■□□□□ 0.5
SKA3-204ENST00000462482 SEZ6LQ9BYH1 1024 aa18.16■□□□□ 0.5
SKA3-204ENST00000462482 IL17RBQ9NRM6 502 aa18.16■□□□□ 0.5
SKA3-204ENST00000462482 TBX21Q9UL17 535 aa18.16■□□□□ 0.5
SKA3-204ENST00000462482 PNMA2Q9UL42 364 aa18.16■□□□□ 0.5
SKA3-204ENST00000462482 SOWAHBA6NEL2 793 aa18.15■□□□□ 0.5
SKA3-204ENST00000462482 ICAM1P05362 532 aa18.15■□□□□ 0.5
SKA3-204ENST00000462482 TOP1P11387 765 aaKnown RBP18.15■□□□□ 0.5
SKA3-204ENST00000462482 FOSL2P15408 326 aa18.15■□□□□ 0.5
SKA3-204ENST00000462482 CDK7P50613 346 aa18.15■□□□□ 0.5
SKA3-204ENST00000462482 PDE1AP54750 535 aa18.15■□□□□ 0.5
SKA3-204ENST00000462482 SNAP25P60880 206 aa18.15■□□□□ 0.5
SKA3-204ENST00000462482 VPS53Q5VIR6 699 aa18.15■□□□□ 0.5
SKA3-204ENST00000462482 IQSEC1Q6DN90 963 aa18.15■□□□□ 0.5
SKA3-204ENST00000462482 TLK2Q86UE8 772 aa18.15■□□□□ 0.5
SKA3-204ENST00000462482 INCENPQ9NQS7 918 aa18.15■□□□□ 0.5
SKA3-204ENST00000462482 CYP39A1Q9NYL5 469 aa18.15■□□□□ 0.5
SKA3-204ENST00000462482 ADD3Q9UEY8 706 aaKnown RBP18.15■□□□□ 0.5
SKA3-204ENST00000462482 PARP14Q460N5 1801 aa18.14■□□□□ 0.5
SKA3-204ENST00000462482 TRIM6-TRIM34B2RNG4 842 aa18.14■□□□□ 0.49
SKA3-204ENST00000462482 DYNC1LI2O43237 492 aaPredicted RBP18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms