RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 SNRPA1P09661 255 aaKnown RBP9.58□□□□□ -0.88
USP54-208ENST00000461520 GRIK1P39086 918 aa9.58□□□□□ -0.88
USP54-208ENST00000461520 PLCB3Q01970 1234 aa9.58□□□□□ -0.88
USP54-208ENST00000461520 DSC3Q14574 896 aa9.58□□□□□ -0.88
USP54-208ENST00000461520 TTLL6Q8N841 843 aa9.58□□□□□ -0.88
USP54-208ENST00000461520 PSMG3-AS1Q96PY0 264 aa9.58□□□□□ -0.88
USP54-208ENST00000461520 KRTAP4-8Q9BYQ9 185 aa9.58□□□□□ -0.88
USP54-208ENST00000461520 USP16Q9Y5T5 823 aa9.58□□□□□ -0.88
USP54-208ENST00000461520 CARMIL3Q8ND23 1372 aa9.58□□□□□ -0.88
USP54-208ENST00000461520 AFDNP55196 1824 aaKnown RBP9.58□□□□□ -0.88
USP54-208ENST00000461520 ADAMTS4O75173 837 aa9.57□□□□□ -0.88
USP54-208ENST00000461520 CAMTA2O94983 1202 aa9.57□□□□□ -0.88
USP54-208ENST00000461520 NFICP08651 508 aa9.57□□□□□ -0.88
USP54-208ENST00000461520 HOXA10P31260 410 aaPredicted RBP9.57□□□□□ -0.88
USP54-208ENST00000461520 ADMP35318 185 aa9.57□□□□□ -0.88
USP54-208ENST00000461520 PDE6BP35913 854 aa9.57□□□□□ -0.88
USP54-208ENST00000461520 FCGRTP55899 365 aa9.57□□□□□ -0.88
USP54-208ENST00000461520 FSTL1Q12841 308 aa9.57□□□□□ -0.88
USP54-208ENST00000461520 DCTN1Q14203 1278 aa9.57□□□□□ -0.88
USP54-208ENST00000461520 PDE3AQ14432 1141 aa9.57□□□□□ -0.88
USP54-208ENST00000461520 TAF7Q15545 349 aaPredicted RBP9.57□□□□□ -0.88
USP54-208ENST00000461520 RPS26P11Q5JNZ5 115 aaPredicted RBP9.57□□□□□ -0.88
USP54-208ENST00000461520 C2CD5Q86YS7 1000 aa9.57□□□□□ -0.88
USP54-208ENST00000461520 SETDB2Q96T68 719 aa9.57□□□□□ -0.88
USP54-208ENST00000461520 BRIP1Q9BX63 1249 aa9.57□□□□□ -0.88
USP54-208ENST00000461520 ZC3H12CQ9C0D7 883 aaKnown RBP9.57□□□□□ -0.88
USP54-208ENST00000461520 ZFYVE1Q9HBF4 777 aa9.57□□□□□ -0.88
USP54-208ENST00000461520 AP4E1Q9UPM8 1137 aa9.57□□□□□ -0.88
USP54-208ENST00000461520 SCN7AQ01118 1682 aa9.57□□□□□ -0.88
USP54-208ENST00000461520 CCDC88AQ3V6T2 1871 aa9.57□□□□□ -0.88
USP54-208ENST00000461520 DLEC1Q9Y238 1755 aa9.56□□□□□ -0.88
USP54-208ENST00000461520 PNMA6FA0A0J9YX94 578 aa9.56□□□□□ -0.88
USP54-208ENST00000461520 PRAMEF22A3QJZ6 481 aa9.56□□□□□ -0.88
USP54-208ENST00000461520 SPINK2P20155 84 aa9.56□□□□□ -0.88
USP54-208ENST00000461520 RAB6AP20340 208 aa9.56□□□□□ -0.88
USP54-208ENST00000461520 HP1BP3Q5SSJ5 553 aaPredicted RBP9.56□□□□□ -0.88
USP54-208ENST00000461520 PRR5LQ6MZQ0 368 aa9.56□□□□□ -0.88
USP54-208ENST00000461520 CLEC4GQ6UXB4 293 aa9.56□□□□□ -0.88
USP54-208ENST00000461520 DTHD1Q6ZMT9 781 aa9.56□□□□□ -0.88
USP54-208ENST00000461520 JMYQ8N9B5 988 aa9.56□□□□□ -0.88
USP54-208ENST00000461520 PNISRQ8TF01 805 aaKnown RBP9.56□□□□□ -0.88
USP54-208ENST00000461520 EZH1Q92800 747 aaPredicted RBP9.56□□□□□ -0.88
USP54-208ENST00000461520 PLEKHF1Q96S99 279 aa9.56□□□□□ -0.88
USP54-208ENST00000461520 BCO2Q9BYV7 579 aa9.56□□□□□ -0.88
USP54-208ENST00000461520 PNNQ9H307 717 aaKnown RBP9.56□□□□□ -0.88
USP54-208ENST00000461520 FAM105AQ9NUU6 356 aa9.56□□□□□ -0.88
USP54-208ENST00000461520 TIAM2Q8IVF5 1701 aa9.56□□□□□ -0.88
USP54-208ENST00000461520 TREHO43280 583 aa9.55□□□□□ -0.88
USP54-208ENST00000461520 AOC2O75106 756 aa9.55□□□□□ -0.88
USP54-208ENST00000461520 LMNB1P20700 586 aa9.55□□□□□ -0.88
USP54-208ENST00000461520 AP3B2Q13367 1082 aa9.55□□□□□ -0.88
USP54-208ENST00000461520 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.55□□□□□ -0.88
USP54-208ENST00000461520 CNBD1Q8NA66 436 aa9.55□□□□□ -0.88
USP54-208ENST00000461520 WDR89Q96FK6 387 aaPredicted RBP9.55□□□□□ -0.88
USP54-208ENST00000461520 WDR18Q9BV38 432 aa9.55□□□□□ -0.88
USP54-208ENST00000461520 YIPF2Q9BWQ6 316 aa9.55□□□□□ -0.88
USP54-208ENST00000461520 PRKAG2Q9UGJ0 569 aa9.55□□□□□ -0.88
USP54-208ENST00000461520 ZNF652Q9Y2D9 606 aa9.55□□□□□ -0.88
USP54-208ENST00000461520 IVNS1ABPQ9Y6Y0 642 aa9.55□□□□□ -0.88
USP54-208ENST00000461520 PCNTO95613 3336 aa9.55□□□□□ -0.88
USP54-208ENST00000461520 NPHP1O15259 732 aa9.54□□□□□ -0.88
USP54-208ENST00000461520 LIG1P18858 919 aa9.54□□□□□ -0.88
USP54-208ENST00000461520 ASPAP45381 313 aa9.54□□□□□ -0.88
USP54-208ENST00000461520 PIP4K2AP48426 406 aaPredicted RBP9.54□□□□□ -0.88
USP54-208ENST00000461520 ST5P78524 1137 aa9.54□□□□□ -0.88
USP54-208ENST00000461520 NFE2L2Q16236 605 aa9.54□□□□□ -0.88
USP54-208ENST00000461520 NXPE4Q6UWF7 544 aa9.54□□□□□ -0.88
USP54-208ENST00000461520 DTX1Q86Y01 620 aa9.54□□□□□ -0.88
USP54-208ENST00000461520 SMC1BQ8NDV3 1235 aa9.54□□□□□ -0.88
USP54-208ENST00000461520 GIMAP7Q8NHV1 300 aa9.54□□□□□ -0.88
USP54-208ENST00000461520 ZNF622Q969S3 477 aaKnown RBP eCLIP9.54□□□□□ -0.88
USP54-208ENST00000461520 TBC1D32Q96NH3 1257 aa9.54□□□□□ -0.88
USP54-208ENST00000461520 OSBPL1AQ9BXW6 950 aa9.54□□□□□ -0.88
USP54-208ENST00000461520 CCDC86Q9H6F5 360 aaKnown RBP9.54□□□□□ -0.88
USP54-208ENST00000461520 PPP4R2Q9NY27 417 aa9.54□□□□□ -0.88
USP54-208ENST00000461520 PPP1R9AQ9ULJ8 1098 aa9.54□□□□□ -0.88
USP54-208ENST00000461520 LEMD3Q9Y2U8 911 aa9.54□□□□□ -0.88
USP54-208ENST00000461520 RALBP1Q15311 655 aa9.53□□□□□ -0.88
USP54-208ENST00000461520 ENOX2Q16206 610 aaKnown RBP9.53□□□□□ -0.88
USP54-208ENST00000461520 SEMA6CQ9H3T2 930 aa9.53□□□□□ -0.88
USP54-208ENST00000461520 GPN3Q9UHW5 284 aaPredicted RBP9.53□□□□□ -0.88
USP54-208ENST00000461520 MAPK8IP3Q9UPT6 1336 aa9.53□□□□□ -0.88
USP54-208ENST00000461520 BCORQ6W2J9 1755 aa9.52□□□□□ -0.88
USP54-208ENST00000461520 GLTPD2A6NH11 291 aa9.52□□□□□ -0.89
USP54-208ENST00000461520 FAM170BA6NMN3 283 aa9.52□□□□□ -0.89
USP54-208ENST00000461520 SRGNP10124 158 aa9.52□□□□□ -0.89
USP54-208ENST00000461520 PRELPP51888 382 aa9.52□□□□□ -0.89
USP54-208ENST00000461520 STYK1Q6J9G0 422 aa9.52□□□□□ -0.89
USP54-208ENST00000461520 TPTE2Q6XPS3 522 aa9.52□□□□□ -0.89
USP54-208ENST00000461520 ZAR1Q86SH2 424 aa9.52□□□□□ -0.89
USP54-208ENST00000461520 NBPF5PQ86XG9 351 aaPredicted RBP9.52□□□□□ -0.89
USP54-208ENST00000461520 MASTLQ96GX5 879 aa9.52□□□□□ -0.89
USP54-208ENST00000461520 ACSS3Q9H6R3 686 aa9.52□□□□□ -0.89
USP54-208ENST00000461520 MIS18AQ9NYP9 233 aa9.52□□□□□ -0.89
USP54-208ENST00000461520 AKAP2Q9Y2D5 859 aa9.52□□□□□ -0.89
USP54-208ENST00000461520 OAS3Q9Y6K5 1087 aaKnown RBP9.52□□□□□ -0.89
USP54-208ENST00000461520 ANKRD31Q8N7Z5 1873 aa9.51□□□□□ -0.89
USP54-208ENST00000461520 DYNC1LI2O43237 492 aaPredicted RBP9.51□□□□□ -0.89
USP54-208ENST00000461520 GP2P55259 537 aaKnown RBP9.51□□□□□ -0.89
USP54-208ENST00000461520 EIF4A1P60842 406 aaKnown RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms