RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 USP42Q9H9J4 1324 aaKnown RBP16.32■□□□□ 0.2
PTPRU-205ENST00000460170 ATP1A3P13637 1013 aa16.32■□□□□ 0.2
PTPRU-205ENST00000460170 NF2P35240 595 aa16.32■□□□□ 0.2
PTPRU-205ENST00000460170 PDE6BP35913 854 aa16.32■□□□□ 0.2
PTPRU-205ENST00000460170 TBC1D10CQ8IV04 446 aa16.32■□□□□ 0.2
PTPRU-205ENST00000460170 RASSF4Q9H2L5 321 aa16.32■□□□□ 0.2
PTPRU-205ENST00000460170 PICK1Q9NRD5 415 aa16.32■□□□□ 0.2
PTPRU-205ENST00000460170 CAMSAP1Q5T5Y3 1602 aa16.32■□□□□ 0.2
PTPRU-205ENST00000460170 ZNF658Q5TYW1 1059 aaPredicted RBP16.32■□□□□ 0.2
PTPRU-205ENST00000460170 KIFC2Q96AC6 838 aa16.32■□□□□ 0.2
PTPRU-205ENST00000460170 TTC31Q49AM3 519 aaPredicted RBP16.31■□□□□ 0.2
PTPRU-205ENST00000460170 BRINP3Q76B58 766 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 STK32BQ9NY57 414 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 PCDHA1Q9Y5I3 950 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 ABCC12Q96J65 1359 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 POLD1P28340 1107 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 ARHGAP44Q17R89 818 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 FBXO11Q86XK2 927 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 KIAA0825Q8IV33 1275 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 DDX41Q9UJV9 622 aaKnown RBP16.31■□□□□ 0.2
PTPRU-205ENST00000460170 PHLPP2Q6ZVD8 1323 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 WDR19Q8NEZ3 1342 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 MYO3AQ8NEV4 1616 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 NCBP1Q09161 790 aaKnown RBP16.31■□□□□ 0.2
PTPRU-205ENST00000460170 STRN3Q13033 797 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 ASPRV1Q53RT3 343 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 GPATCH4Q5T3I0 446 aaKnown RBP16.31■□□□□ 0.2
PTPRU-205ENST00000460170 LIN9Q5TKA1 542 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 SLFN13Q68D06 897 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 SRGAP1Q7Z6B7 1085 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 SPTLC3Q9NUV7 552 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 SETD1BQ9UPS6 1966 aaKnown RBP16.31■□□□□ 0.2
PTPRU-205ENST00000460170 ICA1Q05084 483 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 DOK7Q18PE1 504 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 SLC35F6Q8N357 371 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 RDH13Q8NBN7 331 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 LARP4BQ92615 738 aaKnown RBP16.31■□□□□ 0.2
PTPRU-205ENST00000460170 DLC1Q96QB1 1528 aa16.31■□□□□ 0.2
PTPRU-205ENST00000460170 ADAM9Q13443 819 aa16.3■□□□□ 0.2
PTPRU-205ENST00000460170 ZNF365Q70YC5 407 aa16.3■□□□□ 0.2
PTPRU-205ENST00000460170 MB21D2Q8IYB1 491 aaPredicted RBP16.3■□□□□ 0.2
PTPRU-205ENST00000460170 IPO4Q8TEX9 1081 aaKnown RBP16.3■□□□□ 0.2
PTPRU-205ENST00000460170 STAG1Q8WVM7 1258 aa16.3■□□□□ 0.2
PTPRU-205ENST00000460170 EPSTI1Q96J88 318 aa16.3■□□□□ 0.2
PTPRU-205ENST00000460170 TSNARE1Q96NA8 513 aa16.3■□□□□ 0.2
PTPRU-205ENST00000460170 MYO1AQ9UBC5 1043 aa16.3■□□□□ 0.2
PTPRU-205ENST00000460170 NEXMIFQ5QGS0 1516 aa16.3■□□□□ 0.2
PTPRU-205ENST00000460170 INO80Q9ULG1 1556 aaPredicted RBP16.3■□□□□ 0.2
PTPRU-205ENST00000460170 ZBED4O75132 1171 aa16.3■□□□□ 0.2
PTPRU-205ENST00000460170 MYL1P05976 194 aa16.3■□□□□ 0.2
PTPRU-205ENST00000460170 POLR2FP61218 127 aaKnown RBP16.3■□□□□ 0.2
PTPRU-205ENST00000460170 CLUL1Q15846 466 aa16.3■□□□□ 0.2
PTPRU-205ENST00000460170 U2AF1L4Q8WU68 220 aaKnown RBP16.3■□□□□ 0.2
PTPRU-205ENST00000460170 P2RX5Q93086 422 aa16.3■□□□□ 0.2
PTPRU-205ENST00000460170 CCDC17Q96LX7 622 aa16.3■□□□□ 0.2
PTPRU-205ENST00000460170 CDC25AP30304 524 aa16.3■□□□□ 0.2
PTPRU-205ENST00000460170 RESP18Q5W5W9 173 aa16.3■□□□□ 0.2
PTPRU-205ENST00000460170 BSDC1Q9NW68 430 aaPredicted RBP16.3■□□□□ 0.2
PTPRU-205ENST00000460170 NKIRAS1Q9NYS0 192 aa16.3■□□□□ 0.2
PTPRU-205ENST00000460170 ATP2A2P16615 1042 aaKnown RBP16.3■□□□□ 0.2
PTPRU-205ENST00000460170 ISCA1Q9BUE6 129 aa16.3■□□□□ 0.2
PTPRU-205ENST00000460170 PPIP5K2O43314 1243 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 STAMBPO95630 424 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 USP17L8P0C7I0 530 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 PTPREP23469 700 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 ATP5DP30049 168 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 ZBTB16Q05516 673 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 RABL6Q3YEC7 729 aaPredicted RBP16.29■□□□□ 0.2
PTPRU-205ENST00000460170 GBP6Q6ZN66 633 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.29■□□□□ 0.2
PTPRU-205ENST00000460170 METTL14Q9HCE5 456 aaKnown RBP16.29■□□□□ 0.2
PTPRU-205ENST00000460170 AMFRQ9UKV5 643 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 COL4A3BPQ9Y5P4 624 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 CDHR2Q9BYE9 1310 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 FMR1NBQ8N0W7 255 aaPredicted RBP16.29■□□□□ 0.2
PTPRU-205ENST00000460170 SYNE4Q8N205 404 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 RETREG2Q8NC44 543 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.29■□□□□ 0.2
PTPRU-205ENST00000460170 PAGE5Q96GU1 130 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 RWDD2AQ9UIY3 292 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 CYP2J2P51589 502 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 MECOMQ03112 1051 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 BRIP1Q9BX63 1249 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 TMOD4Q9NZQ9 345 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 OVOS2A0A0J9YW53 1432 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 OVOS2Q6IE36 1432 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 FOSP01100 380 aaPredicted RBP16.29■□□□□ 0.2
PTPRU-205ENST00000460170 CROCCP2Q86T23 111 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 TBCKQ8TEA7 893 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 IWS1Q96ST2 819 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 GOLPH3LQ9H4A5 285 aa16.29■□□□□ 0.2
PTPRU-205ENST00000460170 BUB1O43683 1085 aa16.28■□□□□ 0.2
PTPRU-205ENST00000460170 VIMP08670 466 aaKnown RBP16.28■□□□□ 0.2
PTPRU-205ENST00000460170 FOXO4P98177 505 aa16.28■□□□□ 0.2
PTPRU-205ENST00000460170 CYB5R4Q7L1T6 521 aa16.28■□□□□ 0.2
PTPRU-205ENST00000460170 GJA3Q9Y6H8 435 aa16.28■□□□□ 0.2
PTPRU-205ENST00000460170 PTPRUQ92729 1446 aa16.28■□□□□ 0.2
PTPRU-205ENST00000460170 STK36Q9NRP7 1315 aa16.28■□□□□ 0.2
PTPRU-205ENST00000460170 MTMR3Q13615 1198 aa16.28■□□□□ 0.2
PTPRU-205ENST00000460170 REREQ9P2R6 1566 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms