RNA–Protein interactions for RNA: ENST00000458530.1

VPS50-207, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 667 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-207ENST00000458530 CLRN2A0PK11 232 aa10.31□□□□□ -0.76
VPS50-207ENST00000458530 DDTLA6NHG4 134 aaPredicted RBP10.31□□□□□ -0.76
VPS50-207ENST00000458530 TCP10L2B9ZVM9 353 aa10.31□□□□□ -0.76
VPS50-207ENST00000458530 AKR1B1P15121 316 aa10.31□□□□□ -0.76
VPS50-207ENST00000458530 SMARCA1P28370 1054 aa10.31□□□□□ -0.76
VPS50-207ENST00000458530 GJA5P36382 358 aa10.31□□□□□ -0.76
VPS50-207ENST00000458530 FOSBP53539 338 aa10.31□□□□□ -0.76
VPS50-207ENST00000458530 CACNB3P54284 484 aa10.31□□□□□ -0.76
VPS50-207ENST00000458530 CRHR2Q13324 411 aa10.31□□□□□ -0.76
VPS50-207ENST00000458530 TTLL12Q14166 644 aaPredicted RBP10.31□□□□□ -0.76
VPS50-207ENST00000458530 TATDN1Q6P1N9 297 aa10.31□□□□□ -0.76
VPS50-207ENST00000458530 APOBEC3FQ8IUX4 373 aaKnown RBP10.31□□□□□ -0.76
VPS50-207ENST00000458530 WNK4Q96J92 1243 aa10.31□□□□□ -0.76
VPS50-207ENST00000458530 PTPN18Q99952 460 aa10.31□□□□□ -0.76
VPS50-207ENST00000458530 PRO3102Q9H379 93 aa10.31□□□□□ -0.76
VPS50-207ENST00000458530 KANSL2Q9H9L4 492 aa10.31□□□□□ -0.76
VPS50-207ENST00000458530 LMBRD1Q9NUN5 540 aa10.31□□□□□ -0.76
VPS50-207ENST00000458530 DOCK1Q14185 1865 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 IGKV6D-41A0A0C4DH26 115 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 GOLGA6L4A6NEF3 574 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 hCG_1984214I3L0E3 225 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 FIBPO43427 364 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 TBC1D12O60347 775 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 PRPF40AO75400 957 aaKnown RBP10.3□□□□□ -0.76
VPS50-207ENST00000458530 NUDT7P0C024 238 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 CALML3P27482 149 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 UBE2HP62256 183 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 DNM1Q05193 864 aaKnown RBP10.3□□□□□ -0.76
VPS50-207ENST00000458530 ABCB5Q2M3G0 1257 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 GPATCH4Q5T3I0 446 aaKnown RBP10.3□□□□□ -0.76
VPS50-207ENST00000458530 KRT40Q6A162 431 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 NBPF11Q86T75 865 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 ZNF713Q8N859 430 aaPredicted RBP10.3□□□□□ -0.76
VPS50-207ENST00000458530 CCDC148Q8NFR7 591 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 CD99L2Q8TCZ2 262 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 CCDC12Q8WUD4 166 aaPredicted RBP10.3□□□□□ -0.76
VPS50-207ENST00000458530 CLMNQ96JQ2 1002 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 SPATA32Q96LK8 384 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 SPZ1Q9BXG8 430 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.3□□□□□ -0.76
VPS50-207ENST00000458530 GINM1Q9NU53 330 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 NYAP2Q9P242 653 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 CNPY2Q9Y2B0 182 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 PCDHAC2Q9Y5I4 1007 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 BAZ2BQ9UIF8 2168 aaKnown RBP10.3□□□□□ -0.76
VPS50-207ENST00000458530 A0A0C4DFX4 3053 aa10.3□□□□□ -0.76
VPS50-207ENST00000458530 H0YGN5 161 aa10.29□□□□□ -0.76
VPS50-207ENST00000458530 MMP1P03956 469 aa10.29□□□□□ -0.76
VPS50-207ENST00000458530 SCG2P13521 617 aa10.29□□□□□ -0.76
VPS50-207ENST00000458530 GUCY1B3Q02153 619 aa10.29□□□□□ -0.76
VPS50-207ENST00000458530 ICA1Q05084 483 aa10.29□□□□□ -0.76
VPS50-207ENST00000458530 DSG2Q14126 1118 aa10.29□□□□□ -0.76
VPS50-207ENST00000458530 FOXD4L6Q3SYB3 417 aaPredicted RBP10.29□□□□□ -0.76
VPS50-207ENST00000458530 FOXD4L3Q6VB84 417 aaPredicted RBP10.29□□□□□ -0.76
VPS50-207ENST00000458530 SH3BP5LQ7L8J4 393 aa10.29□□□□□ -0.76
VPS50-207ENST00000458530 PLPP6Q8IY26 295 aa10.29□□□□□ -0.76
VPS50-207ENST00000458530 SLC10A4Q96EP9 437 aa10.29□□□□□ -0.76
VPS50-207ENST00000458530 DEFB129Q9H1M3 183 aa10.29□□□□□ -0.76
VPS50-207ENST00000458530 FOXP1Q9H334 677 aaPredicted RBP10.29□□□□□ -0.76
VPS50-207ENST00000458530 SH2D4AQ9H788 454 aa10.29□□□□□ -0.76
VPS50-207ENST00000458530 EFCC1Q9HA90 598 aa10.29□□□□□ -0.76
VPS50-207ENST00000458530 ARHGEF10LQ9HCE6 1279 aa10.29□□□□□ -0.76
VPS50-207ENST00000458530 SH3GLB2Q9NR46 395 aa10.29□□□□□ -0.76
VPS50-207ENST00000458530 SEC63Q9UGP8 760 aaKnown RBP10.29□□□□□ -0.76
VPS50-207ENST00000458530 FZD1Q9UP38 647 aa10.29□□□□□ -0.76
VPS50-207ENST00000458530 PCDHGA4Q9Y5G9 962 aa10.29□□□□□ -0.76
VPS50-207ENST00000458530 PPP2R3BQ9Y5P8 575 aa10.29□□□□□ -0.76
VPS50-207ENST00000458530 PALM3A6NDB9 673 aaPredicted RBP10.28□□□□□ -0.76
VPS50-207ENST00000458530 PLEKHA8P1O95397 391 aa10.28□□□□□ -0.76
VPS50-207ENST00000458530 KRT2P35908 639 aa10.28□□□□□ -0.76
VPS50-207ENST00000458530 SP3Q02447 781 aa10.28□□□□□ -0.76
VPS50-207ENST00000458530 FUT2Q10981 343 aa10.28□□□□□ -0.76
VPS50-207ENST00000458530 PFKFB3Q16875 520 aaPredicted RBP10.28□□□□□ -0.76
VPS50-207ENST00000458530 DCAF15Q66K64 600 aa10.28□□□□□ -0.76
VPS50-207ENST00000458530 GALNT17Q6IS24 598 aa10.28□□□□□ -0.76
VPS50-207ENST00000458530 SPNS2Q8IVW8 549 aa10.28□□□□□ -0.76
VPS50-207ENST00000458530 ZFPM1Q8IX07 1006 aa10.28□□□□□ -0.76
VPS50-207ENST00000458530 CCDC82Q8N4S0 544 aa10.28□□□□□ -0.76
VPS50-207ENST00000458530 DCAF4Q8WV16 495 aa10.28□□□□□ -0.76
VPS50-207ENST00000458530 RRP36Q96EU6 259 aaKnown RBP10.28□□□□□ -0.76
VPS50-207ENST00000458530 DNAJC18Q9H819 358 aa10.28□□□□□ -0.76
VPS50-207ENST00000458530 CLIP2Q9UDT6 1046 aa10.28□□□□□ -0.76
VPS50-207ENST00000458530 MAD2L2Q9UI95 211 aa10.28□□□□□ -0.76
VPS50-207ENST00000458530 ISY1Q9ULR0 285 aaKnown RBP10.28□□□□□ -0.76
VPS50-207ENST00000458530 V9GY48 417 aaPredicted RBP10.28□□□□□ -0.76
VPS50-207ENST00000458530 LAMA3Q16787 3333 aa10.28□□□□□ -0.76
VPS50-207ENST00000458530 KLRF2D3W0D1 207 aa10.27□□□□□ -0.77
VPS50-207ENST00000458530 PPFIA3O75145 1194 aa10.27□□□□□ -0.77
VPS50-207ENST00000458530 YEATS4O95619 227 aa10.27□□□□□ -0.77
VPS50-207ENST00000458530 PDHBP11177 359 aa10.27□□□□□ -0.77
VPS50-207ENST00000458530 U2AF2P26368 475 aaKnown RBP eCLIP10.27□□□□□ -0.776e-6■■■■□ 22.5
VPS50-207ENST00000458530 ATP2B2Q01814 1243 aa10.27□□□□□ -0.77
VPS50-207ENST00000458530 PRKG1Q13976 671 aa10.27□□□□□ -0.77
VPS50-207ENST00000458530 CCDC96Q2M329 555 aa10.27□□□□□ -0.77
VPS50-207ENST00000458530 MYSM1Q5VVJ2 828 aa10.27□□□□□ -0.77
VPS50-207ENST00000458530 UBE2Q1Q7Z7E8 422 aa10.27□□□□□ -0.77
VPS50-207ENST00000458530 SRBD1Q8N5C6 995 aaKnown RBP10.27□□□□□ -0.77
VPS50-207ENST00000458530 KCNG4Q8TDN1 519 aa10.27□□□□□ -0.77
VPS50-207ENST00000458530 MKL1Q969V6 931 aa10.27□□□□□ -0.77
VPS50-207ENST00000458530 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms