RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 C7orf61Q8IZ16 206 aa14.19□□□□□ -0.14
USP40-210ENST00000454354 ESR2Q92731 530 aa14.19□□□□□ -0.14
USP40-210ENST00000454354 DDX11Q96FC9 970 aa14.19□□□□□ -0.14
USP40-210ENST00000454354 FGD4Q96M96 766 aa14.19□□□□□ -0.14
USP40-210ENST00000454354 ACAD9Q9H845 621 aa14.19□□□□□ -0.14
USP40-210ENST00000454354 ISY1Q9ULR0 285 aaKnown RBP14.19□□□□□ -0.14
USP40-210ENST00000454354 SNHG28P0DPA3 235 aa14.18□□□□□ -0.14
USP40-210ENST00000454354 LRRC26Q2I0M4 334 aa14.18□□□□□ -0.14
USP40-210ENST00000454354 CCDC96Q2M329 555 aa14.18□□□□□ -0.14
USP40-210ENST00000454354 DGKHQ86XP1 1220 aa14.18□□□□□ -0.14
USP40-210ENST00000454354 ANKRD35Q8N283 1001 aa14.18□□□□□ -0.14
USP40-210ENST00000454354 ARRDC4Q8NCT1 418 aa14.18□□□□□ -0.14
USP40-210ENST00000454354 CHMP4CQ96CF2 233 aa14.18□□□□□ -0.14
USP40-210ENST00000454354 AGBL1Q96MI9 1066 aa14.18□□□□□ -0.14
USP40-210ENST00000454354 RANBP17Q9H2T7 1088 aaKnown RBP14.18□□□□□ -0.14
USP40-210ENST00000454354 RNF146Q9NTX7 359 aa14.18□□□□□ -0.14
USP40-210ENST00000454354 RBM27Q9P2N5 1060 aaKnown RBP14.18□□□□□ -0.14
USP40-210ENST00000454354 CTNNA3Q9UI47 895 aa14.18□□□□□ -0.14
USP40-210ENST00000454354 A0A1W2PPC1 479 aa14.17□□□□□ -0.14
USP40-210ENST00000454354 SNAI1O95863 264 aaPredicted RBP14.17□□□□□ -0.14
USP40-210ENST00000454354 PDHBP11177 359 aa14.17□□□□□ -0.14
USP40-210ENST00000454354 AKR1A1P14550 325 aa14.17□□□□□ -0.14
USP40-210ENST00000454354 TAL1P17542 331 aaPredicted RBP14.17□□□□□ -0.14
USP40-210ENST00000454354 SLC4A3P48751 1232 aa14.17□□□□□ -0.14
USP40-210ENST00000454354 FXR1P51114 621 aaKnown RBP eCLIP14.17□□□□□ -0.14
USP40-210ENST00000454354 LRRC41Q15345 812 aa14.17□□□□□ -0.14
USP40-210ENST00000454354 IMMTQ16891 758 aaKnown RBP14.17□□□□□ -0.14
USP40-210ENST00000454354 CCDC178Q5BJE1 867 aa14.17□□□□□ -0.14
USP40-210ENST00000454354 GJC2Q5T442 439 aaPredicted RBP14.17□□□□□ -0.14
USP40-210ENST00000454354 A1CFQ9NQ94 594 aaKnown RBP14.17□□□□□ -0.14
USP40-210ENST00000454354 HOMER2Q9NSB8 354 aa14.17□□□□□ -0.14
USP40-210ENST00000454354 CNPY2Q9Y2B0 182 aa14.17□□□□□ -0.14
USP40-210ENST00000454354 KBTBD13C9JR72 458 aa14.16□□□□□ -0.14
USP40-210ENST00000454354 KDM4AO75164 1064 aa14.16□□□□□ -0.14
USP40-210ENST00000454354 ICAM1P05362 532 aa14.16□□□□□ -0.14
USP40-210ENST00000454354 RARBP10826 455 aa14.16□□□□□ -0.14
USP40-210ENST00000454354 CHMLP26374 656 aa14.16□□□□□ -0.14
USP40-210ENST00000454354 ZNF543Q08ER8 600 aa14.16□□□□□ -0.14
USP40-210ENST00000454354 SYDE2Q5VT97 1194 aa14.16□□□□□ -0.14
USP40-210ENST00000454354 ANO1Q5XXA6 986 aa14.16□□□□□ -0.14
USP40-210ENST00000454354 TTBK2Q6IQ55 1244 aa14.16□□□□□ -0.14
USP40-210ENST00000454354 CCDC174Q6PII3 467 aa14.16□□□□□ -0.14
USP40-210ENST00000454354 IQCA1Q86XH1 822 aa14.16□□□□□ -0.14
USP40-210ENST00000454354 FAM133AQ8N9E0 248 aa14.16□□□□□ -0.14
USP40-210ENST00000454354 ANKS1AQ92625 1134 aa14.16□□□□□ -0.14
USP40-210ENST00000454354 TRERF1Q96PN7 1200 aa14.16□□□□□ -0.14
USP40-210ENST00000454354 GDF15Q99988 308 aa14.16□□□□□ -0.14
USP40-210ENST00000454354 SENP6Q9GZR1 1112 aaPredicted RBP14.16□□□□□ -0.14
USP40-210ENST00000454354 XPNPEP3Q9NQH7 507 aa14.16□□□□□ -0.14
USP40-210ENST00000454354 MTMR7Q9Y216 660 aa14.16□□□□□ -0.14
USP40-210ENST00000454354 B4E1Z4 1266 aa14.15□□□□□ -0.14
USP40-210ENST00000454354 ALAS1P13196 640 aa14.15□□□□□ -0.14
USP40-210ENST00000454354 ARMCX2Q7L311 632 aa14.15□□□□□ -0.14
USP40-210ENST00000454354 RUFY2Q8WXA3 655 aa14.15□□□□□ -0.14
USP40-210ENST00000454354 ZKSCAN3Q9BRR0 538 aa14.15□□□□□ -0.14
USP40-210ENST00000454354 KRT23Q9C075 422 aa14.15□□□□□ -0.14
USP40-210ENST00000454354 ABHD16BQ9H3Z7 469 aa14.15□□□□□ -0.14
USP40-210ENST00000454354 CNNM2Q9H8M5 875 aa14.15□□□□□ -0.14
USP40-210ENST00000454354 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.15□□□□□ -0.14
USP40-210ENST00000454354 CCPG1Q9ULG6 757 aa14.15□□□□□ -0.14
USP40-210ENST00000454354 ZMYND8Q9ULU4 1186 aaPredicted RBP14.15□□□□□ -0.14
USP40-210ENST00000454354 FRMPD2Q68DX3 1309 aaPredicted RBP14.15□□□□□ -0.15
USP40-210ENST00000454354 POTEB2H3BUK9 544 aa14.14□□□□□ -0.15
USP40-210ENST00000454354 ADAMTS4O75173 837 aa14.14□□□□□ -0.15
USP40-210ENST00000454354 BMP8BP34820 402 aa14.14□□□□□ -0.15
USP40-210ENST00000454354 SLC16A2P36021 539 aa14.14□□□□□ -0.15
USP40-210ENST00000454354 SNAP25P60880 206 aa14.14□□□□□ -0.15
USP40-210ENST00000454354 CNTN2Q02246 1040 aa14.14□□□□□ -0.15
USP40-210ENST00000454354 SNX17Q15036 470 aa14.14□□□□□ -0.15
USP40-210ENST00000454354 MUM1L1Q5H9M0 696 aa14.14□□□□□ -0.15
USP40-210ENST00000454354 GPATCH4Q5T3I0 446 aaKnown RBP14.14□□□□□ -0.15
USP40-210ENST00000454354 ENAHQ8N8S7 591 aaPredicted RBP14.14□□□□□ -0.15
USP40-210ENST00000454354 PNMA1Q8ND90 353 aa14.14□□□□□ -0.15
USP40-210ENST00000454354 ZSCAN10Q96SZ4 725 aaPredicted RBP14.14□□□□□ -0.15
USP40-210ENST00000454354 KATNBL1Q9H079 304 aa14.14□□□□□ -0.15
USP40-210ENST00000454354 CYP39A1Q9NYL5 469 aa14.14□□□□□ -0.15
USP40-210ENST00000454354 ZSWIM5Q9P217 1185 aa14.14□□□□□ -0.15
USP40-210ENST00000454354 PNMA2Q9UL42 364 aa14.14□□□□□ -0.15
USP40-210ENST00000454354 PHF24Q9UPV7 400 aa14.14□□□□□ -0.15
USP40-210ENST00000454354 TNKSO95271 1327 aa14.14□□□□□ -0.15
USP40-210ENST00000454354 WDR19Q8NEZ3 1342 aa14.14□□□□□ -0.15
USP40-210ENST00000454354 SYNRGQ9UMZ2 1314 aa14.14□□□□□ -0.15
USP40-210ENST00000454354 KIAA1217Q5T5P2 1943 aa14.13□□□□□ -0.15
USP40-210ENST00000454354 SOWAHBA6NEL2 793 aa14.13□□□□□ -0.15
USP40-210ENST00000454354 SGSM2O43147 1006 aa14.13□□□□□ -0.15
USP40-210ENST00000454354 RTP1P59025 263 aa14.13□□□□□ -0.15
USP40-210ENST00000454354 ACVR2BQ13705 512 aa14.13□□□□□ -0.15
USP40-210ENST00000454354 C1orf53Q5VUE5 145 aa14.13□□□□□ -0.15
USP40-210ENST00000454354 RNF180Q86T96 592 aa14.13□□□□□ -0.15
USP40-210ENST00000454354 CCDC144CPQ8IYA2 1237 aa14.13□□□□□ -0.15
USP40-210ENST00000454354 LENG1Q96BZ8 264 aaPredicted RBP14.13□□□□□ -0.15
USP40-210ENST00000454354 GPCPD1Q9NPB8 672 aa14.13□□□□□ -0.15
USP40-210ENST00000454354 ZHX1Q9UKY1 873 aaPredicted RBP14.13□□□□□ -0.15
USP40-210ENST00000454354 FAM184BQ9ULE4 1060 aa14.13□□□□□ -0.15
USP40-210ENST00000454354 ASTN1O14525 1302 aa14.13□□□□□ -0.15
USP40-210ENST00000454354 ASB14A6NK59 587 aa14.12□□□□□ -0.15
USP40-210ENST00000454354 DUSP11O75319 330 aaKnown RBP14.12□□□□□ -0.15
USP40-210ENST00000454354 PGK1P00558 417 aa14.12□□□□□ -0.15
USP40-210ENST00000454354 CYP21A2P08686 494 aa14.12□□□□□ -0.15
USP40-210ENST00000454354 SYN1P17600 705 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms