RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 CTDP1Q9Y5B0 961 aaPredicted RBP23.35■■□□□ 1.33
COL9A3-202ENST00000452372 FRMPD2Q68DX3 1309 aaPredicted RBP23.34■■□□□ 1.33
COL9A3-202ENST00000452372 STRNO43815 780 aa23.34■■□□□ 1.33
COL9A3-202ENST00000452372 PRKAR2AP13861 404 aaKnown RBP23.34■■□□□ 1.33
COL9A3-202ENST00000452372 HSPA4P34932 840 aa23.34■■□□□ 1.33
COL9A3-202ENST00000452372 GPATCH4Q5T3I0 446 aaKnown RBP23.34■■□□□ 1.33
COL9A3-202ENST00000452372 NCAPG2Q86XI2 1143 aa23.34■■□□□ 1.33
COL9A3-202ENST00000452372 ANKLE1Q8NAG6 615 aa23.34■■□□□ 1.33
COL9A3-202ENST00000452372 TEX13BQ9BXU2 312 aa23.34■■□□□ 1.33
COL9A3-202ENST00000452372 IVNS1ABPQ9Y6Y0 642 aa23.34■■□□□ 1.33
COL9A3-202ENST00000452372 SLC15A5A6NIM6 579 aa23.33■■□□□ 1.33
COL9A3-202ENST00000452372 PRC1O43663 620 aa23.33■■□□□ 1.33
COL9A3-202ENST00000452372 COPB2P35606 906 aa23.33■■□□□ 1.33
COL9A3-202ENST00000452372 RGS2P41220 211 aa23.33■■□□□ 1.33
COL9A3-202ENST00000452372 OAZ1P54368 228 aa23.33■■□□□ 1.33
COL9A3-202ENST00000452372 MAP2K5Q13163 448 aa23.33■■□□□ 1.33
COL9A3-202ENST00000452372 KRT32Q14532 448 aa23.33■■□□□ 1.33
COL9A3-202ENST00000452372 WTAPQ15007 396 aa23.33■■□□□ 1.33
COL9A3-202ENST00000452372 TMEM67Q5HYA8 995 aa23.33■■□□□ 1.33
COL9A3-202ENST00000452372 NECAB2Q7Z6G3 386 aa23.33■■□□□ 1.33
COL9A3-202ENST00000452372 TRMT44Q8IYL2 757 aaKnown RBP23.33■■□□□ 1.33
COL9A3-202ENST00000452372 CPXCR1Q8N123 301 aa23.33■■□□□ 1.33
COL9A3-202ENST00000452372 NEK1Q96PY6 1258 aa23.33■■□□□ 1.33
COL9A3-202ENST00000452372 FLRT1Q9NZU1 646 aa23.33■■□□□ 1.33
COL9A3-202ENST00000452372 NR2E3Q9Y5X4 410 aa23.33■■□□□ 1.33
COL9A3-202ENST00000452372 IGHA2P01877 340 aa23.32■■□□□ 1.32
COL9A3-202ENST00000452372 SLC16A2P36021 539 aa23.32■■□□□ 1.32
COL9A3-202ENST00000452372 COL9A3Q14050 684 aaPredicted RBP23.32■■□□□ 1.32
COL9A3-202ENST00000452372 LHX8Q68G74 356 aa23.32■■□□□ 1.32
COL9A3-202ENST00000452372 TMEM87BQ96K49 555 aa23.32■■□□□ 1.32
COL9A3-202ENST00000452372 SENP2Q9HC62 589 aa23.32■■□□□ 1.32
COL9A3-202ENST00000452372 RAVER2Q9HCJ3 691 aaKnown RBP23.32■■□□□ 1.32
COL9A3-202ENST00000452372 EVI5O60447 810 aa23.31■■□□□ 1.32
COL9A3-202ENST00000452372 CCND3P30281 292 aaPredicted RBP23.31■■□□□ 1.32
COL9A3-202ENST00000452372 GRB14Q14449 540 aa23.31■■□□□ 1.32
COL9A3-202ENST00000452372 ASPRV1Q53RT3 343 aa23.31■■□□□ 1.32
COL9A3-202ENST00000452372 SYDE2Q5VT97 1194 aa23.31■■□□□ 1.32
COL9A3-202ENST00000452372 SNRNP48Q6IEG0 339 aaKnown RBP23.31■■□□□ 1.32
COL9A3-202ENST00000452372 ABRAQ8N0Z2 381 aa23.31■■□□□ 1.32
COL9A3-202ENST00000452372 APBA2Q99767 749 aa23.31■■□□□ 1.32
COL9A3-202ENST00000452372 USP26Q9BXU7 913 aa23.31■■□□□ 1.32
COL9A3-202ENST00000452372 ZNFX1Q9P2E3 1918 aaKnown RBP23.3■■□□□ 1.32
COL9A3-202ENST00000452372 PARP1P09874 1014 aaKnown RBP23.3■■□□□ 1.32
COL9A3-202ENST00000452372 GOLGA8HP0CJ92 632 aa23.3■■□□□ 1.32
COL9A3-202ENST00000452372 ADCK5Q3MIX3 580 aa23.3■■□□□ 1.32
COL9A3-202ENST00000452372 TMTC2Q8N394 836 aa23.3■■□□□ 1.32
COL9A3-202ENST00000452372 LY9Q9HBG7 655 aa23.3■■□□□ 1.32
COL9A3-202ENST00000452372 RIPK3Q9Y572 518 aa23.3■■□□□ 1.32
COL9A3-202ENST00000452372 ZNF536O15090 1300 aa23.3■■□□□ 1.32
COL9A3-202ENST00000452372 HOXC6P09630 235 aa23.29■■□□□ 1.32
COL9A3-202ENST00000452372 FCER1AP12319 257 aa23.29■■□□□ 1.32
COL9A3-202ENST00000452372 NPLOC4Q8TAT6 608 aa23.29■■□□□ 1.32
COL9A3-202ENST00000452372 RANBP17Q9H2T7 1088 aaKnown RBP23.29■■□□□ 1.32
COL9A3-202ENST00000452372 SNX14Q9Y5W7 946 aa23.29■■□□□ 1.32
COL9A3-202ENST00000452372 SH2B2O14492 632 aaPredicted RBP23.28■■□□□ 1.32
COL9A3-202ENST00000452372 ADORA2AP29274 412 aa23.28■■□□□ 1.32
COL9A3-202ENST00000452372 LIFRP42702 1097 aa23.28■■□□□ 1.32
COL9A3-202ENST00000452372 SNAP25P60880 206 aa23.28■■□□□ 1.32
COL9A3-202ENST00000452372 EXOSC10Q01780 885 aaKnown RBP23.28■■□□□ 1.32
COL9A3-202ENST00000452372 TROAPQ12815 778 aa23.28■■□□□ 1.32
COL9A3-202ENST00000452372 DHX32Q7L7V1 743 aaKnown RBP23.28■■□□□ 1.32
COL9A3-202ENST00000452372 GPHNQ9NQX3 736 aaPredicted RBP23.28■■□□□ 1.32
COL9A3-202ENST00000452372 WDR19Q8NEZ3 1342 aa23.28■■□□□ 1.32
COL9A3-202ENST00000452372 ZNF236Q9UL36 1845 aa23.27■■□□□ 1.32
COL9A3-202ENST00000452372 HMGB1P09429 215 aaKnown RBP23.27■■□□□ 1.32
COL9A3-202ENST00000452372 SLC4A3P48751 1232 aa23.27■■□□□ 1.32
COL9A3-202ENST00000452372 CCDC174Q6PII3 467 aa23.27■■□□□ 1.32
COL9A3-202ENST00000452372 CATIPQ7Z7H3 387 aa23.27■■□□□ 1.32
COL9A3-202ENST00000452372 CHST13Q8NET6 341 aa23.27■■□□□ 1.32
COL9A3-202ENST00000452372 AGBL1Q96MI9 1066 aa23.27■■□□□ 1.32
COL9A3-202ENST00000452372 UBA5Q9GZZ9 404 aa23.27■■□□□ 1.32
COL9A3-202ENST00000452372 MAD2L2Q9UI95 211 aa23.27■■□□□ 1.32
COL9A3-202ENST00000452372 DNAH12Q6ZR08 3092 aa23.27■■□□□ 1.32
COL9A3-202ENST00000452372 PALM3A6NDB9 673 aaPredicted RBP23.26■■□□□ 1.31
COL9A3-202ENST00000452372 ICAM1P05362 532 aa23.26■■□□□ 1.31
COL9A3-202ENST00000452372 COL6A1P12109 1028 aa23.26■■□□□ 1.31
COL9A3-202ENST00000452372 KCTD2Q14681 263 aa23.26■■□□□ 1.31
COL9A3-202ENST00000452372 TKFCQ3LXA3 575 aa23.26■■□□□ 1.31
COL9A3-202ENST00000452372 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.26■■□□□ 1.31
COL9A3-202ENST00000452372 DPP9Q86TI2 863 aa23.26■■□□□ 1.31
COL9A3-202ENST00000452372 STAG2Q8N3U4 1231 aa23.26■■□□□ 1.31
COL9A3-202ENST00000452372 MMP19Q99542 508 aa23.26■■□□□ 1.31
COL9A3-202ENST00000452372 CPVLQ9H3G5 476 aa23.26■■□□□ 1.31
COL9A3-202ENST00000452372 C11orf49Q9H6J7 331 aa23.26■■□□□ 1.31
COL9A3-202ENST00000452372 FBXO40Q9UH90 709 aa23.26■■□□□ 1.31
COL9A3-202ENST00000452372 PFASO15067 1338 aa23.26■■□□□ 1.31
COL9A3-202ENST00000452372 LAMA3Q16787 3333 aa23.25■■□□□ 1.31
COL9A3-202ENST00000452372 SMCHD1A6NHR9 2005 aa23.25■■□□□ 1.31
COL9A3-202ENST00000452372 EIF5BO60841 1220 aaKnown RBP23.25■■□□□ 1.31
COL9A3-202ENST00000452372 GRM4Q14833 912 aa23.25■■□□□ 1.31
COL9A3-202ENST00000452372 ZNF654Q8IZM8 581 aa23.25■■□□□ 1.31
COL9A3-202ENST00000452372 MAP3K14Q99558 947 aa23.25■■□□□ 1.31
COL9A3-202ENST00000452372 LRRC2Q9BYS8 371 aa23.25■■□□□ 1.31
COL9A3-202ENST00000452372 SLC5A4Q9NY91 659 aa23.25■■□□□ 1.31
COL9A3-202ENST00000452372 CCDC69A6NI79 296 aa23.24■■□□□ 1.31
COL9A3-202ENST00000452372 KLRF2D3W0D1 207 aa23.24■■□□□ 1.31
COL9A3-202ENST00000452372 COBLO75128 1261 aa23.24■■□□□ 1.31
COL9A3-202ENST00000452372 NFXL1Q6ZNB6 911 aa23.24■■□□□ 1.31
COL9A3-202ENST00000452372 SGMS1Q86VZ5 419 aa23.24■■□□□ 1.31
COL9A3-202ENST00000452372 ADGRF4Q8IZF3 695 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms