RNA–Protein interactions for RNA: ENST00000452143.5

USP1-204, Transcript of ubiquitin specific peptidase 1, humanhuman

TSL 3

Gene USP1, Length 893 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-204ENST00000452143 KIFC2Q96AC6 838 aa12.97□□□□□ -0.33
USP1-204ENST00000452143 LENG1Q96BZ8 264 aaPredicted RBP12.97□□□□□ -0.33
USP1-204ENST00000452143 STARD7Q9NQZ5 370 aa12.97□□□□□ -0.33
USP1-204ENST00000452143 ZHX1Q9UKY1 873 aaPredicted RBP12.97□□□□□ -0.33
USP1-204ENST00000452143 RIPK3Q9Y572 518 aa12.97□□□□□ -0.33
USP1-204ENST00000452143 PRUNE2Q8WUY3 3088 aa12.97□□□□□ -0.33
USP1-204ENST00000452143 MROH7Q68CQ1 1323 aa12.96□□□□□ -0.33
USP1-204ENST00000452143 TTC28Q96AY4 2481 aa12.96□□□□□ -0.33
USP1-204ENST00000452143 PQBP1O60828 265 aaKnown RBP12.96□□□□□ -0.33
USP1-204ENST00000452143 PRDM1O75626 825 aa12.96□□□□□ -0.33
USP1-204ENST00000452143 SNAI1O95863 264 aaPredicted RBP12.96□□□□□ -0.33
USP1-204ENST00000452143 TSPY3P0CV98 308 aa12.96□□□□□ -0.33
USP1-204ENST00000452143 TSPY8P0CW00 308 aa12.96□□□□□ -0.33
USP1-204ENST00000452143 RAG1P15918 1043 aa12.96□□□□□ -0.33
USP1-204ENST00000452143 STAT2P52630 851 aa12.96□□□□□ -0.33
USP1-204ENST00000452143 PPP4R3BQ5MIZ7 849 aa12.96□□□□□ -0.33
USP1-204ENST00000452143 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.96□□□□□ -0.33
USP1-204ENST00000452143 CPXCR1Q8N123 301 aa12.96□□□□□ -0.33
USP1-204ENST00000452143 ANKRD35Q8N283 1001 aa12.96□□□□□ -0.33
USP1-204ENST00000452143 KLHDC9Q8NEP7 349 aa12.96□□□□□ -0.33
USP1-204ENST00000452143 NEDD1Q8NHV4 660 aa12.96□□□□□ -0.33
USP1-204ENST00000452143 ABHD16BQ9H3Z7 469 aa12.96□□□□□ -0.33
USP1-204ENST00000452143 ELP1O95163 1332 aa12.95□□□□□ -0.34
USP1-204ENST00000452143 DCDC2CA8MYV0 355 aa12.95□□□□□ -0.34
USP1-204ENST00000452143 BMP3P12645 472 aa12.95□□□□□ -0.34
USP1-204ENST00000452143 ITGB8P26012 769 aa12.95□□□□□ -0.34
USP1-204ENST00000452143 FPGSQ05932 587 aa12.95□□□□□ -0.34
USP1-204ENST00000452143 ACVR2BQ13705 512 aa12.95□□□□□ -0.34
USP1-204ENST00000452143 CCSAPQ6IQ19 270 aaPredicted RBP12.95□□□□□ -0.34
USP1-204ENST00000452143 LRRC47Q8N1G4 583 aaKnown RBP12.95□□□□□ -0.34
USP1-204ENST00000452143 PCSK9Q8NBP7 692 aaKnown RBP12.95□□□□□ -0.34
USP1-204ENST00000452143 PI4K2BQ8TCG2 481 aa12.95□□□□□ -0.34
USP1-204ENST00000452143 GMCL1Q96IK5 515 aa12.95□□□□□ -0.34
USP1-204ENST00000452143 RNPC3Q96LT9 517 aaKnown RBP12.95□□□□□ -0.34
USP1-204ENST00000452143 GLT1D1Q96MS3 346 aa12.95□□□□□ -0.34
USP1-204ENST00000452143 FAM161BQ96MY7 647 aa12.95□□□□□ -0.34
USP1-204ENST00000452143 NAPBQ9H115 298 aa12.95□□□□□ -0.34
USP1-204ENST00000452143 SPC25Q9HBM1 224 aa12.95□□□□□ -0.34
USP1-204ENST00000452143 RAVER2Q9HCJ3 691 aaKnown RBP12.95□□□□□ -0.34
USP1-204ENST00000452143 TMEM39AQ9NV64 488 aa12.95□□□□□ -0.34
USP1-204ENST00000452143 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.95□□□□□ -0.34
USP1-204ENST00000452143 PPARAQ07869 468 aa12.94□□□□□ -0.34
USP1-204ENST00000452143 FAAP100Q0VG06 881 aa12.94□□□□□ -0.34
USP1-204ENST00000452143 KCNA10Q16322 511 aa12.94□□□□□ -0.34
USP1-204ENST00000452143 SLFN13Q68D06 897 aa12.94□□□□□ -0.34
USP1-204ENST00000452143 ARMCX2Q7L311 632 aa12.94□□□□□ -0.34
USP1-204ENST00000452143 FAM160B2Q86V87 743 aa12.94□□□□□ -0.34
USP1-204ENST00000452143 FGD4Q96M96 766 aa12.94□□□□□ -0.34
USP1-204ENST00000452143 CDX2Q99626 313 aaPredicted RBP12.94□□□□□ -0.34
USP1-204ENST00000452143 FSD1Q9BTV5 496 aa12.94□□□□□ -0.34
USP1-204ENST00000452143 UPF3AQ9H1J1 476 aaKnown RBP12.94□□□□□ -0.34
USP1-204ENST00000452143 ACAD9Q9H845 621 aa12.94□□□□□ -0.34
USP1-204ENST00000452143 PLA2G6O60733 806 aa12.93□□□□□ -0.34
USP1-204ENST00000452143 C6orf222P0C671 652 aaPredicted RBP12.93□□□□□ -0.34
USP1-204ENST00000452143 SLC1A4P43007 532 aa12.93□□□□□ -0.34
USP1-204ENST00000452143 SLC4A3P48751 1232 aa12.93□□□□□ -0.34
USP1-204ENST00000452143 GJA9P57773 515 aa12.93□□□□□ -0.34
USP1-204ENST00000452143 NKX3-2P78367 333 aa12.93□□□□□ -0.34
USP1-204ENST00000452143 CCDC144BQ3MJ40 725 aa12.93□□□□□ -0.34
USP1-204ENST00000452143 ZMYM1Q5SVZ6 1142 aa12.93□□□□□ -0.34
USP1-204ENST00000452143 CCDC144CPQ8IYA2 1237 aa12.93□□□□□ -0.34
USP1-204ENST00000452143 CHURC1Q8WUH1 139 aa12.93□□□□□ -0.34
USP1-204ENST00000452143 SEMA6BQ9H3T3 888 aa12.93□□□□□ -0.34
USP1-204ENST00000452143 TBX21Q9UL17 535 aa12.93□□□□□ -0.34
USP1-204ENST00000452143 LCTP09848 1927 aa12.93□□□□□ -0.34
USP1-204ENST00000452143 A0A0U1RQG5 324 aaPredicted RBP12.92□□□□□ -0.34
USP1-204ENST00000452143 MYADML2A6NDP7 307 aa12.92□□□□□ -0.34
USP1-204ENST00000452143 TMEM232C9JQI7 657 aa12.92□□□□□ -0.34
USP1-204ENST00000452143 ADCY6O43306 1168 aa12.92□□□□□ -0.34
USP1-204ENST00000452143 TIMP1P01033 207 aa12.92□□□□□ -0.34
USP1-204ENST00000452143 MX1P20591 662 aa12.92□□□□□ -0.34
USP1-204ENST00000452143 EPHB4P54760 987 aa12.92□□□□□ -0.34
USP1-204ENST00000452143 TFAP4Q01664 338 aa12.92□□□□□ -0.34
USP1-204ENST00000452143 TKFCQ3LXA3 575 aa12.92□□□□□ -0.34
USP1-204ENST00000452143 CCDC174Q6PII3 467 aa12.92□□□□□ -0.34
USP1-204ENST00000452143 FAM133AQ8N9E0 248 aa12.92□□□□□ -0.34
USP1-204ENST00000452143 MAFAQ8NHW3 353 aaPredicted RBP12.92□□□□□ -0.34
USP1-204ENST00000452143 SEC62Q99442 399 aaKnown RBP12.92□□□□□ -0.34
USP1-204ENST00000452143 KATNBL1Q9H079 304 aa12.92□□□□□ -0.34
USP1-204ENST00000452143 TTYH1Q9H313 450 aaPredicted RBP12.92□□□□□ -0.34
USP1-204ENST00000452143 A1CFQ9NQ94 594 aaKnown RBP12.92□□□□□ -0.34
USP1-204ENST00000452143 HOMER2Q9NSB8 354 aa12.92□□□□□ -0.34
USP1-204ENST00000452143 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.92□□□□□ -0.34
USP1-204ENST00000452143 CHD9Q3L8U1 2897 aa12.92□□□□□ -0.34
USP1-204ENST00000452143 ZNF536O15090 1300 aa12.91□□□□□ -0.34
USP1-204ENST00000452143 ASB14A6NK59 587 aa12.91□□□□□ -0.34
USP1-204ENST00000452143 TSPY2A6NKD2 308 aa12.91□□□□□ -0.34
USP1-204ENST00000452143 ASGR1P07306 291 aa12.91□□□□□ -0.34
USP1-204ENST00000452143 CDK7P50613 346 aa12.91□□□□□ -0.34
USP1-204ENST00000452143 IKQ13123 557 aaPredicted RBP12.91□□□□□ -0.34
USP1-204ENST00000452143 MFSD5Q6N075 450 aa12.91□□□□□ -0.34
USP1-204ENST00000452143 STAG1Q8WVM7 1258 aa12.91□□□□□ -0.34
USP1-204ENST00000452143 RNF146Q9NTX7 359 aa12.91□□□□□ -0.34
USP1-204ENST00000452143 ISY1Q9ULR0 285 aaKnown RBP12.91□□□□□ -0.34
USP1-204ENST00000452143 STX8Q9UNK0 236 aa12.91□□□□□ -0.34
USP1-204ENST00000452143 SALL3Q9BXA9 1300 aa12.9□□□□□ -0.34
USP1-204ENST00000452143 TLR3O15455 904 aaKnown RBP12.9□□□□□ -0.34
USP1-204ENST00000452143 FOSL2P15408 326 aa12.9□□□□□ -0.34
USP1-204ENST00000452143 CNTN2Q02246 1040 aa12.9□□□□□ -0.34
USP1-204ENST00000452143 PPIGQ13427 754 aaKnown RBP eCLIP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms