RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 SMIM22K7EJ46 135 aa8.37□□□□□ -1.07
VPS41-208ENST00000448833 PRDM1O75626 825 aa8.37□□□□□ -1.07
VPS41-208ENST00000448833 PRR29P0C7W0 189 aa8.37□□□□□ -1.07
VPS41-208ENST00000448833 SLC4A3P48751 1232 aa8.37□□□□□ -1.07
VPS41-208ENST00000448833 MCMDC2Q4G0Z9 681 aa8.37□□□□□ -1.07
VPS41-208ENST00000448833 DEFB123Q8N688 67 aa8.37□□□□□ -1.07
VPS41-208ENST00000448833 TOX2Q96NM4 488 aa8.37□□□□□ -1.07
VPS41-208ENST00000448833 NUP88Q99567 741 aaPredicted RBP8.37□□□□□ -1.07
VPS41-208ENST00000448833 SEZ6LQ9BYH1 1024 aa8.37□□□□□ -1.07
VPS41-208ENST00000448833 ACAD9Q9H845 621 aa8.37□□□□□ -1.07
VPS41-208ENST00000448833 ISY1Q9ULR0 285 aaKnown RBP8.37□□□□□ -1.07
VPS41-208ENST00000448833 STX8Q9UNK0 236 aa8.37□□□□□ -1.07
VPS41-208ENST00000448833 LTBP2Q14767 1821 aa8.37□□□□□ -1.07
VPS41-208ENST00000448833 ELP1O95163 1332 aa8.36□□□□□ -1.07
VPS41-208ENST00000448833 LOC102724159A0A0B4J2E5 919 aa8.36□□□□□ -1.07
VPS41-208ENST00000448833 ORC4O43929 436 aa8.36□□□□□ -1.07
VPS41-208ENST00000448833 RANBP6O60518 1105 aaKnown RBP8.36□□□□□ -1.07
VPS41-208ENST00000448833 ZNF865P0CJ78 1059 aaPredicted RBP8.36□□□□□ -1.07
VPS41-208ENST00000448833 ACLYP53396 1101 aa8.36□□□□□ -1.07
VPS41-208ENST00000448833 PDE1AP54750 535 aa8.36□□□□□ -1.07
VPS41-208ENST00000448833 ACVR2BQ13705 512 aa8.36□□□□□ -1.07
VPS41-208ENST00000448833 PWP2Q15269 919 aaKnown RBP8.36□□□□□ -1.07
VPS41-208ENST00000448833 FAM47AQ5JRC9 791 aa8.36□□□□□ -1.07
VPS41-208ENST00000448833 ANO1Q5XXA6 986 aa8.36□□□□□ -1.07
VPS41-208ENST00000448833 CCDC174Q6PII3 467 aa8.36□□□□□ -1.07
VPS41-208ENST00000448833 SLC17A8Q8NDX2 589 aa8.36□□□□□ -1.07
VPS41-208ENST00000448833 DCAF4Q8WV16 495 aa8.36□□□□□ -1.07
VPS41-208ENST00000448833 FERMT2Q96AC1 680 aa8.36□□□□□ -1.07
VPS41-208ENST00000448833 LRCH3Q96II8 777 aa8.36□□□□□ -1.07
VPS41-208ENST00000448833 GLT1D1Q96MS3 346 aa8.36□□□□□ -1.07
VPS41-208ENST00000448833 TTC14Q96N46 770 aa8.36□□□□□ -1.07
VPS41-208ENST00000448833 SEC62Q99442 399 aaKnown RBP8.36□□□□□ -1.07
VPS41-208ENST00000448833 MPHOSPH6Q99547 160 aaKnown RBP8.36□□□□□ -1.07
VPS41-208ENST00000448833 RAVER2Q9HCJ3 691 aaKnown RBP8.36□□□□□ -1.07
VPS41-208ENST00000448833 PRDM5Q9NQX1 630 aaPredicted RBP8.36□□□□□ -1.07
VPS41-208ENST00000448833 STXBP5LQ9Y2K9 1186 aa8.36□□□□□ -1.07
VPS41-208ENST00000448833 RIPK3Q9Y572 518 aa8.36□□□□□ -1.07
VPS41-208ENST00000448833 ZMYM6O95789 1325 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 SALL3Q9BXA9 1300 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 A0A1W2PQ45 241 aaPredicted RBP8.35□□□□□ -1.07
VPS41-208ENST00000448833 A0A1W2PQY0 241 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 TRIM6-TRIM34B2RNG4 842 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 B4DLN1 442 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 POTEB2H3BUK9 544 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 HIP1O00291 1037 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 SOX1O00570 391 aaPredicted RBP8.35□□□□□ -1.07
VPS41-208ENST00000448833 ZEB2O60315 1214 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 SNAI1O95863 264 aaPredicted RBP8.35□□□□□ -1.07
VPS41-208ENST00000448833 PGK1P00558 417 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 CLTBP09497 229 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 FGRP09769 529 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 RAG1P15918 1043 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 MCCP23508 829 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 CST5P28325 142 aaPredicted RBP8.35□□□□□ -1.07
VPS41-208ENST00000448833 MRPL12P52815 198 aaKnown RBP8.35□□□□□ -1.07
VPS41-208ENST00000448833 TLE2Q04725 743 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 TRIM60Q495X7 471 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 CCDC178Q5BJE1 867 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 CCDC129Q6ZRS4 1044 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 ANKRD33Q7Z3H0 272 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 LRRC47Q8N1G4 583 aaKnown RBP8.35□□□□□ -1.07
VPS41-208ENST00000448833 MAF1Q9H063 256 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 RNF41Q9H4P4 317 aaPredicted RBP8.35□□□□□ -1.07
VPS41-208ENST00000448833 STARD7Q9NQZ5 370 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 TOMM22Q9NS69 142 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 TCP11L1Q9NUJ3 509 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.35□□□□□ -1.07
VPS41-208ENST00000448833 ADD3Q9UEY8 706 aaKnown RBP8.35□□□□□ -1.07
VPS41-208ENST00000448833 ZHX1Q9UKY1 873 aaPredicted RBP8.35□□□□□ -1.07
VPS41-208ENST00000448833 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.35□□□□□ -1.07
VPS41-208ENST00000448833 MYH6P13533 1939 aa8.35□□□□□ -1.07
VPS41-208ENST00000448833 KIAA0355O15063 1070 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 TLR3O15455 904 aaKnown RBP8.34□□□□□ -1.07
VPS41-208ENST00000448833 ADAMTS4O75173 837 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 CABYRO75952 493 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 FGAP02671 866 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 C6orf222P0C671 652 aaPredicted RBP8.34□□□□□ -1.07
VPS41-208ENST00000448833 TOP1P11387 765 aaKnown RBP8.34□□□□□ -1.07
VPS41-208ENST00000448833 TAL1P17542 331 aaPredicted RBP8.34□□□□□ -1.07
VPS41-208ENST00000448833 NOVP48745 357 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 GJA9P57773 515 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 KCNA10Q16322 511 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 CCDC144BQ3MJ40 725 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 GNASQ5JWF2 1037 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 IQSEC1Q6DN90 963 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 MFSD6Q6ZSS7 791 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 ARMCX2Q7L311 632 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 KLHDC9Q8NEP7 349 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 OTUD7AQ8TE49 926 aaPredicted RBP8.34□□□□□ -1.07
VPS41-208ENST00000448833 VTI1AQ96AJ9 217 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 TRERF1Q96PN7 1200 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 CRBNQ96SW2 442 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 AP5M1Q9H0R1 490 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 PDLIM7Q9NR12 457 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 RNF146Q9NTX7 359 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 TMEM39AQ9NV64 488 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 MTMR10Q9NXD2 777 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 Q9Y3F1 56 aa8.34□□□□□ -1.07
VPS41-208ENST00000448833 A0A0C4DFX4 3053 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 SYNRGQ9UMZ2 1314 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms