RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 MSL3Q8N5Y2 521 aaKnown RBP23.36■■□□□ 1.33
SHROOM1-204ENST00000440118 AGBL1Q96MI9 1066 aa23.36■■□□□ 1.33
SHROOM1-204ENST00000440118 DSCC1Q9BVC3 393 aa23.36■■□□□ 1.33
SHROOM1-204ENST00000440118 RBM27Q9P2N5 1060 aaKnown RBP23.36■■□□□ 1.33
SHROOM1-204ENST00000440118 ZHX1Q9UKY1 873 aaPredicted RBP23.36■■□□□ 1.33
SHROOM1-204ENST00000440118 CCPG1Q9ULG6 757 aa23.36■■□□□ 1.33
SHROOM1-204ENST00000440118 AKR1A1P14550 325 aa23.35■■□□□ 1.33
SHROOM1-204ENST00000440118 ATN1P54259 1190 aaPredicted RBP23.35■■□□□ 1.33
SHROOM1-204ENST00000440118 SNAP25P60880 206 aa23.35■■□□□ 1.33
SHROOM1-204ENST00000440118 LRRC26Q2I0M4 334 aa23.35■■□□□ 1.33
SHROOM1-204ENST00000440118 TKFCQ3LXA3 575 aa23.35■■□□□ 1.33
SHROOM1-204ENST00000440118 IQCA1Q86XH1 822 aa23.35■■□□□ 1.33
SHROOM1-204ENST00000440118 RUFY2Q8WXA3 655 aa23.35■■□□□ 1.33
SHROOM1-204ENST00000440118 ZKSCAN3Q9BRR0 538 aa23.35■■□□□ 1.33
SHROOM1-204ENST00000440118 GPCPD1Q9NPB8 672 aa23.35■■□□□ 1.33
SHROOM1-204ENST00000440118 XPNPEP3Q9NQH7 507 aa23.35■■□□□ 1.33
SHROOM1-204ENST00000440118 SYNGAP1Q96PV0 1343 aa23.34■■□□□ 1.33
SHROOM1-204ENST00000440118 GSPT1P15170 499 aaKnown RBP23.34■■□□□ 1.33
SHROOM1-204ENST00000440118 TRERF1Q96PN7 1200 aa23.34■■□□□ 1.33
SHROOM1-204ENST00000440118 RAD50Q92878 1312 aa23.33■■□□□ 1.33
SHROOM1-204ENST00000440118 DNAJC25-GNG10A0A024R161 153 aa23.33■■□□□ 1.33
SHROOM1-204ENST00000440118 POTEB2H3BUK9 544 aa23.33■■□□□ 1.33
SHROOM1-204ENST00000440118 KDM4AO75164 1064 aa23.33■■□□□ 1.33
SHROOM1-204ENST00000440118 SLC16A2P36021 539 aa23.33■■□□□ 1.33
SHROOM1-204ENST00000440118 NOVP48745 357 aa23.33■■□□□ 1.33
SHROOM1-204ENST00000440118 NT5C2P49902 561 aa23.33■■□□□ 1.33
SHROOM1-204ENST00000440118 CCDC178Q5BJE1 867 aa23.33■■□□□ 1.33
SHROOM1-204ENST00000440118 SYDE2Q5VT97 1194 aa23.33■■□□□ 1.33
SHROOM1-204ENST00000440118 TTC14Q96N46 770 aa23.33■■□□□ 1.33
SHROOM1-204ENST00000440118 TAL1P17542 331 aaPredicted RBP23.32■■□□□ 1.32
SHROOM1-204ENST00000440118 TTBK2Q6IQ55 1244 aa23.32■■□□□ 1.32
SHROOM1-204ENST00000440118 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.32■■□□□ 1.32
SHROOM1-204ENST00000440118 ZNF467Q7Z7K2 595 aaPredicted RBP23.32■■□□□ 1.32
SHROOM1-204ENST00000440118 RNF180Q86T96 592 aa23.32■■□□□ 1.32
SHROOM1-204ENST00000440118 PRKAG2Q9UGJ0 569 aa23.32■■□□□ 1.32
SHROOM1-204ENST00000440118 ZNF536O15090 1300 aa23.32■■□□□ 1.32
SHROOM1-204ENST00000440118 B4E1Z4 1266 aa23.31■■□□□ 1.32
SHROOM1-204ENST00000440118 PDHBP11177 359 aa23.31■■□□□ 1.32
SHROOM1-204ENST00000440118 FXR1P51114 621 aaKnown RBP eCLIP23.31■■□□□ 1.32
SHROOM1-204ENST00000440118 LRRC41Q15345 812 aa23.31■■□□□ 1.32
SHROOM1-204ENST00000440118 UBAC1Q9BSL1 405 aa23.31■■□□□ 1.32
SHROOM1-204ENST00000440118 KRT23Q9C075 422 aa23.31■■□□□ 1.32
SHROOM1-204ENST00000440118 KAT14Q9H8E8 782 aa23.31■■□□□ 1.32
SHROOM1-204ENST00000440118 CNNM2Q9H8M5 875 aa23.31■■□□□ 1.32
SHROOM1-204ENST00000440118 A1CFQ9NQ94 594 aaKnown RBP23.31■■□□□ 1.32
SHROOM1-204ENST00000440118 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.31■■□□□ 1.32
SHROOM1-204ENST00000440118 FAM184BQ9ULE4 1060 aa23.31■■□□□ 1.32
SHROOM1-204ENST00000440118 MYH6P13533 1939 aa23.31■■□□□ 1.32
SHROOM1-204ENST00000440118 ICAM1P05362 532 aa23.3■■□□□ 1.32
SHROOM1-204ENST00000440118 ZNF865P0CJ78 1059 aaPredicted RBP23.3■■□□□ 1.32
SHROOM1-204ENST00000440118 MAMDC4Q6UXC1 1216 aa23.3■■□□□ 1.32
SHROOM1-204ENST00000440118 NSMFQ6X4W1 530 aa23.3■■□□□ 1.32
SHROOM1-204ENST00000440118 ARMCX2Q7L311 632 aa23.3■■□□□ 1.32
SHROOM1-204ENST00000440118 FERMT2Q96AC1 680 aa23.3■■□□□ 1.32
SHROOM1-204ENST00000440118 LENG1Q96BZ8 264 aaPredicted RBP23.3■■□□□ 1.32
SHROOM1-204ENST00000440118 ATP11BQ9Y2G3 1177 aa23.3■■□□□ 1.32
SHROOM1-204ENST00000440118 PGK1P00558 417 aa23.29■■□□□ 1.32
SHROOM1-204ENST00000440118 ADCYAP1R1P41586 468 aa23.29■■□□□ 1.32
SHROOM1-204ENST00000440118 RANBP2P49792 3224 aaKnown RBP23.29■■□□□ 1.32
SHROOM1-204ENST00000440118 RTP1P59025 263 aa23.29■■□□□ 1.32
SHROOM1-204ENST00000440118 DGKHQ86XP1 1220 aa23.29■■□□□ 1.32
SHROOM1-204ENST00000440118 RANBP17Q9H2T7 1088 aaKnown RBP23.29■■□□□ 1.32
SHROOM1-204ENST00000440118 ABHD16BQ9H3Z7 469 aa23.29■■□□□ 1.32
SHROOM1-204ENST00000440118 DNAH12Q6ZR08 3092 aa23.28■■□□□ 1.32
SHROOM1-204ENST00000440118 SNAI1O95863 264 aaPredicted RBP23.28■■□□□ 1.32
SHROOM1-204ENST00000440118 CNTN2Q02246 1040 aa23.28■■□□□ 1.32
SHROOM1-204ENST00000440118 ZNF543Q08ER8 600 aa23.28■■□□□ 1.32
SHROOM1-204ENST00000440118 TRDNQ13061 729 aa23.28■■□□□ 1.32
SHROOM1-204ENST00000440118 ACVR2BQ13705 512 aa23.28■■□□□ 1.32
SHROOM1-204ENST00000440118 BTNL9Q6UXG8 535 aa23.28■■□□□ 1.32
SHROOM1-204ENST00000440118 CCDC144CPQ8IYA2 1237 aa23.28■■□□□ 1.32
SHROOM1-204ENST00000440118 PNMA1Q8ND90 353 aa23.28■■□□□ 1.32
SHROOM1-204ENST00000440118 ZSCAN10Q96SZ4 725 aaPredicted RBP23.28■■□□□ 1.32
SHROOM1-204ENST00000440118 PNMA2Q9UL42 364 aa23.28■■□□□ 1.32
SHROOM1-204ENST00000440118 A0A1W2PPC1 479 aa23.27■■□□□ 1.32
SHROOM1-204ENST00000440118 MAGEA10P43363 369 aaPredicted RBP23.27■■□□□ 1.32
SHROOM1-204ENST00000440118 MUM1L1Q5H9M0 696 aa23.27■■□□□ 1.32
SHROOM1-204ENST00000440118 GPATCH4Q5T3I0 446 aaKnown RBP23.27■■□□□ 1.32
SHROOM1-204ENST00000440118 FAM133AQ8N9E0 248 aa23.27■■□□□ 1.32
SHROOM1-204ENST00000440118 LBHD1Q9BQE6 289 aaPredicted RBP23.27■■□□□ 1.32
SHROOM1-204ENST00000440118 IL25Q9H293 177 aa23.27■■□□□ 1.32
SHROOM1-204ENST00000440118 SPC25Q9HBM1 224 aa23.27■■□□□ 1.32
SHROOM1-204ENST00000440118 LRRC37A2A6NM11 1700 aa23.27■■□□□ 1.32
SHROOM1-204ENST00000440118 TNKSO95271 1327 aa23.27■■□□□ 1.32
SHROOM1-204ENST00000440118 ASB14A6NK59 587 aa23.26■■□□□ 1.31
SHROOM1-204ENST00000440118 DHX16O60231 1041 aaKnown RBP23.26■■□□□ 1.31
SHROOM1-204ENST00000440118 CHMLP26374 656 aa23.26■■□□□ 1.31
SHROOM1-204ENST00000440118 NOL8Q76FK4 1167 aaKnown RBP23.26■■□□□ 1.31
SHROOM1-204ENST00000440118 UBE2OQ9C0C9 1292 aaKnown RBP23.26■■□□□ 1.31
SHROOM1-204ENST00000440118 PRO3102Q9H379 93 aa23.26■■□□□ 1.31
SHROOM1-204ENST00000440118 PRDM5Q9NQX1 630 aaPredicted RBP23.26■■□□□ 1.31
SHROOM1-204ENST00000440118 SYNRGQ9UMZ2 1314 aa23.26■■□□□ 1.31
SHROOM1-204ENST00000440118 LCTP09848 1927 aa23.25■■□□□ 1.31
SHROOM1-204ENST00000440118 PTPDC1A2A3K4 754 aa23.25■■□□□ 1.31
SHROOM1-204ENST00000440118 GOLGA8HP0CJ92 632 aa23.25■■□□□ 1.31
SHROOM1-204ENST00000440118 CCDC144BQ3MJ40 725 aa23.25■■□□□ 1.31
SHROOM1-204ENST00000440118 SLC39A5Q6ZMH5 540 aa23.25■■□□□ 1.31
SHROOM1-204ENST00000440118 FGD4Q96M96 766 aa23.25■■□□□ 1.31
SHROOM1-204ENST00000440118 CYP39A1Q9NYL5 469 aa23.25■■□□□ 1.31
SHROOM1-204ENST00000440118 PHF24Q9UPV7 400 aa23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms