RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 KBTBD4Q9NVX7 518 aa12.69□□□□□ -0.38
USP4-205ENST00000431357 PSD3Q9NYI0 1048 aa12.69□□□□□ -0.38
USP4-205ENST00000431357 MYO6Q9UM54 1294 aa12.69□□□□□ -0.38
USP4-205ENST00000431357 CAPN11Q9UMQ6 739 aa12.69□□□□□ -0.38
USP4-205ENST00000431357 ROBO3Q96MS0 1386 aa12.69□□□□□ -0.38
USP4-205ENST00000431357 FAM205AQ6ZU69 1335 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 ERICH4A6NGS2 130 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 VEGFAP15692 232 aaPredicted RBP12.68□□□□□ -0.38
USP4-205ENST00000431357 PRDX5P30044 214 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 KRT83P78385 493 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 NAALADL2Q58DX5 795 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 DZIP1Q86YF9 867 aaKnown RBP12.68□□□□□ -0.38
USP4-205ENST00000431357 IRF2BP1Q8IU81 584 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 RETREG2Q8NC44 543 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 GIMAP8Q8ND71 665 aaPredicted RBP12.68□□□□□ -0.38
USP4-205ENST00000431357 EHBP1Q8NDI1 1231 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 ZNF507Q8TCN5 953 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 ZNF622Q969S3 477 aaKnown RBP eCLIP12.68□□□□□ -0.382e-6■■□□□ 13.5
USP4-205ENST00000431357 SLF1Q9BQI6 1058 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 GEMIN8Q9NWZ8 242 aaKnown RBP12.68□□□□□ -0.38
USP4-205ENST00000431357 PCDHA6Q9UN73 950 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 PCDHA8Q9Y5H6 950 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 MYH13Q9UKX3 1938 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 CNTNAP4Q9C0A0 1308 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 RNF225M0QZC1 329 aaPredicted RBP12.68□□□□□ -0.38
USP4-205ENST00000431357 PSMD14O00487 310 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 KLRC4O43908 158 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 COBLO75128 1261 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 CDC25AP30304 524 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 GSTO1P78417 241 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 AMPD2Q01433 879 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 EVX2Q03828 476 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 BARGINQ6ZT62 677 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 FAM114A1Q8IWE2 563 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 EXOC4Q96A65 974 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 IL17RBQ9NRM6 502 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 TFCP2L1Q9NZI6 479 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 MKRN1Q9UHC7 482 aaKnown RBP12.68□□□□□ -0.38
USP4-205ENST00000431357 MAD2L2Q9UI95 211 aa12.68□□□□□ -0.38
USP4-205ENST00000431357 CCDC88AQ3V6T2 1871 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 TTC26A0AVF1 554 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 BICDL2A1A5D9 508 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 ADAMTS3O15072 1205 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 MCM3P25205 808 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 KLRK1P26718 216 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 WDR66Q8TBY9 1149 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 GPKOWQ92917 476 aaPredicted RBP eCLIP12.67□□□□□ -0.38
USP4-205ENST00000431357 IQCDQ96DY2 449 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 TRIM47Q96LD4 638 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 MKNK2Q9HBH9 465 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 BARHL2Q9NY43 387 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 L1RE1Q9UN81 338 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 NRAPQ86VF7 1730 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 BAG3O95817 575 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 USP17L8P0C7I0 530 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 SRGNP10124 158 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 CYLC1P35663 651 aaPredicted RBP12.67□□□□□ -0.38
USP4-205ENST00000431357 ORC2Q13416 577 aaPredicted RBP12.67□□□□□ -0.38
USP4-205ENST00000431357 TBC1D9BQ66K14 1250 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 CERS3Q8IU89 383 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 ZNF444Q8N0Y2 327 aaPredicted RBP12.67□□□□□ -0.38
USP4-205ENST00000431357 LINC00116Q8NCU8 138 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 RPGRIP1Q96KN7 1286 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 SETDB2Q96T68 719 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 CHP1Q99653 195 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 ACBD3Q9H3P7 528 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 ZNF287Q9HBT7 754 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 ZNHIT6Q9NWK9 470 aaKnown RBP12.67□□□□□ -0.38
USP4-205ENST00000431357 MAPK8IP1Q9UQF2 711 aa12.67□□□□□ -0.38
USP4-205ENST00000431357 CASZ1Q86V15 1759 aa12.66□□□□□ -0.38
USP4-205ENST00000431357 SPATA31A5Q5VU36 1347 aa12.66□□□□□ -0.38
USP4-205ENST00000431357 SPATA31A7Q8IWB4 1347 aa12.66□□□□□ -0.38
USP4-205ENST00000431357 STXBP3O00186 592 aa12.66□□□□□ -0.38
USP4-205ENST00000431357 TSPY3P0CV98 308 aa12.66□□□□□ -0.38
USP4-205ENST00000431357 TSPY8P0CW00 308 aa12.66□□□□□ -0.38
USP4-205ENST00000431357 PPP4CP60510 307 aa12.66□□□□□ -0.38
USP4-205ENST00000431357 MEA1Q16626 185 aa12.66□□□□□ -0.38
USP4-205ENST00000431357 TTI2Q6NXR4 508 aa12.66□□□□□ -0.38
USP4-205ENST00000431357 WDR93Q6P2C0 686 aa12.66□□□□□ -0.38
USP4-205ENST00000431357 BICDL1Q6ZP65 573 aa12.66□□□□□ -0.38
USP4-205ENST00000431357 TRAPPC11Q7Z392 1133 aa12.66□□□□□ -0.38
USP4-205ENST00000431357 KRT25Q7Z3Z0 450 aa12.66□□□□□ -0.38
USP4-205ENST00000431357 STAG2Q8N3U4 1231 aa12.66□□□□□ -0.38
USP4-205ENST00000431357 PNKPQ96T60 521 aa12.66□□□□□ -0.38
USP4-205ENST00000431357 TMEM60Q9H2L4 133 aa12.66□□□□□ -0.38
USP4-205ENST00000431357 EXOC1Q9NV70 894 aa12.66□□□□□ -0.38
USP4-205ENST00000431357 NARFQ9UHQ1 456 aa12.66□□□□□ -0.38
USP4-205ENST00000431357 PALM3A6NDB9 673 aaPredicted RBP12.65□□□□□ -0.38
USP4-205ENST00000431357 TRIM49BA6NDI0 452 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 LDHBP07195 334 aaKnown RBP12.65□□□□□ -0.38
USP4-205ENST00000431357 LDHCP07864 332 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 CCNE1P24864 410 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 AMPD3Q01432 767 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 INF2Q27J81 1249 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 COBLL1Q53SF7 1204 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 RC3H1Q5TC82 1133 aaKnown RBP12.65□□□□□ -0.38
USP4-205ENST00000431357 TPTE2Q6XPS3 522 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 HEATR3Q7Z4Q2 680 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 CCDC170Q8IYT3 715 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 RASGRP4Q8TDF6 673 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms