RNA–Protein interactions for RNA: ENST00000428555.1

TRIM39-208, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-208ENST00000428555 TRERF1Q96PN7 1200 aa11.14□□□□□ -0.63
TRIM39-208ENST00000428555 ZSCAN10Q96SZ4 725 aaPredicted RBP11.14□□□□□ -0.63
TRIM39-208ENST00000428555 FBXO40Q9UH90 709 aa11.14□□□□□ -0.63
TRIM39-208ENST00000428555 COLQQ9Y215 455 aaPredicted RBP11.14□□□□□ -0.63
TRIM39-208ENST00000428555 PFASO15067 1338 aa11.13□□□□□ -0.63
TRIM39-208ENST00000428555 SGSM2O43147 1006 aa11.13□□□□□ -0.63
TRIM39-208ENST00000428555 SNAI1O95863 264 aaPredicted RBP11.13□□□□□ -0.63
TRIM39-208ENST00000428555 MYCNP04198 464 aaPredicted RBP11.13□□□□□ -0.63
TRIM39-208ENST00000428555 ZNF865P0CJ78 1059 aaPredicted RBP11.13□□□□□ -0.63
TRIM39-208ENST00000428555 GOLGA8HP0CJ92 632 aa11.13□□□□□ -0.63
TRIM39-208ENST00000428555 CNTN2Q02246 1040 aa11.13□□□□□ -0.63
TRIM39-208ENST00000428555 ZNF543Q08ER8 600 aa11.13□□□□□ -0.63
TRIM39-208ENST00000428555 TKFCQ3LXA3 575 aa11.13□□□□□ -0.63
TRIM39-208ENST00000428555 CCDC178Q5BJE1 867 aa11.13□□□□□ -0.63
TRIM39-208ENST00000428555 HABP4Q5JVS0 413 aaKnown RBP11.13□□□□□ -0.63
TRIM39-208ENST00000428555 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.13□□□□□ -0.63
TRIM39-208ENST00000428555 IQCA1Q86XH1 822 aa11.13□□□□□ -0.63
TRIM39-208ENST00000428555 ARRDC4Q8NCT1 418 aa11.13□□□□□ -0.63
TRIM39-208ENST00000428555 ANKS1AQ92625 1134 aa11.13□□□□□ -0.63
TRIM39-208ENST00000428555 KRT23Q9C075 422 aa11.13□□□□□ -0.63
TRIM39-208ENST00000428555 SENP6Q9GZR1 1112 aaPredicted RBP11.13□□□□□ -0.63
TRIM39-208ENST00000428555 RNF146Q9NTX7 359 aa11.13□□□□□ -0.63
TRIM39-208ENST00000428555 NRBP1Q9UHY1 535 aa11.13□□□□□ -0.63
TRIM39-208ENST00000428555 MYH8P13535 1937 aa11.13□□□□□ -0.63
TRIM39-208ENST00000428555 POTEB2H3BUK9 544 aa11.12□□□□□ -0.63
TRIM39-208ENST00000428555 CYP21A2P08686 494 aa11.12□□□□□ -0.63
TRIM39-208ENST00000428555 SNHG28P0DPA3 235 aa11.12□□□□□ -0.63
TRIM39-208ENST00000428555 LRRC26Q2I0M4 334 aa11.12□□□□□ -0.63
TRIM39-208ENST00000428555 MUM1L1Q5H9M0 696 aa11.12□□□□□ -0.63
TRIM39-208ENST00000428555 MAMDC4Q6UXC1 1216 aa11.12□□□□□ -0.63
TRIM39-208ENST00000428555 CHRDL2Q6WN34 429 aa11.12□□□□□ -0.63
TRIM39-208ENST00000428555 HOMEZQ8IX15 550 aa11.12□□□□□ -0.63
TRIM39-208ENST00000428555 C7orf61Q8IZ16 206 aa11.12□□□□□ -0.63
TRIM39-208ENST00000428555 ENAHQ8N8S7 591 aaPredicted RBP11.12□□□□□ -0.63
TRIM39-208ENST00000428555 PNMA1Q8ND90 353 aa11.12□□□□□ -0.63
TRIM39-208ENST00000428555 FGD4Q96M96 766 aa11.12□□□□□ -0.63
TRIM39-208ENST00000428555 UBA5Q9GZZ9 404 aa11.12□□□□□ -0.63
TRIM39-208ENST00000428555 RANBP17Q9H2T7 1088 aaKnown RBP11.12□□□□□ -0.63
TRIM39-208ENST00000428555 CPVLQ9H3G5 476 aa11.12□□□□□ -0.63
TRIM39-208ENST00000428555 ACAD9Q9H845 621 aa11.12□□□□□ -0.63
TRIM39-208ENST00000428555 KAT14Q9H8E8 782 aa11.12□□□□□ -0.63
TRIM39-208ENST00000428555 A1CFQ9NQ94 594 aaKnown RBP11.12□□□□□ -0.63
TRIM39-208ENST00000428555 CCPG1Q9ULG6 757 aa11.12□□□□□ -0.63
TRIM39-208ENST00000428555 ZMYND8Q9ULU4 1186 aaPredicted RBP11.12□□□□□ -0.63
TRIM39-208ENST00000428555 CNPY2Q9Y2B0 182 aa11.12□□□□□ -0.63
TRIM39-208ENST00000428555 TAF6LQ9Y6J9 622 aa11.12□□□□□ -0.63
TRIM39-208ENST00000428555 RAD50Q92878 1312 aa11.11□□□□□ -0.63
TRIM39-208ENST00000428555 SOWAHBA6NEL2 793 aa11.11□□□□□ -0.63
TRIM39-208ENST00000428555 ICAM1P05362 532 aa11.11□□□□□ -0.63
TRIM39-208ENST00000428555 NT5C2P49902 561 aa11.11□□□□□ -0.63
TRIM39-208ENST00000428555 ATN1P54259 1190 aaPredicted RBP11.11□□□□□ -0.63
TRIM39-208ENST00000428555 ACVR2BQ13705 512 aa11.11□□□□□ -0.63
TRIM39-208ENST00000428555 CYB5R4Q7L1T6 521 aa11.11□□□□□ -0.63
TRIM39-208ENST00000428555 CENPQQ7L2Z9 268 aaPredicted RBP11.11□□□□□ -0.63
TRIM39-208ENST00000428555 ZNF467Q7Z7K2 595 aaPredicted RBP11.11□□□□□ -0.63
TRIM39-208ENST00000428555 MSL3Q8N5Y2 521 aaKnown RBP11.11□□□□□ -0.63
TRIM39-208ENST00000428555 FAM133AQ8N9E0 248 aa11.11□□□□□ -0.63
TRIM39-208ENST00000428555 MAP4K1Q92918 833 aa11.11□□□□□ -0.63
TRIM39-208ENST00000428555 PURBQ96QR8 312 aaKnown RBP11.11□□□□□ -0.63
TRIM39-208ENST00000428555 CNNM2Q9H8M5 875 aa11.11□□□□□ -0.63
TRIM39-208ENST00000428555 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.11□□□□□ -0.63
TRIM39-208ENST00000428555 U3KPZ7 1027 aaPredicted RBP11.11□□□□□ -0.63
TRIM39-208ENST00000428555 SYNGAP1Q96PV0 1343 aa11.1□□□□□ -0.63
TRIM39-208ENST00000428555 A0A0G2JMZ2 1700 aa11.1□□□□□ -0.63
TRIM39-208ENST00000428555 DNM1LO00429 736 aa11.1□□□□□ -0.63
TRIM39-208ENST00000428555 PGK1P00558 417 aa11.1□□□□□ -0.63
TRIM39-208ENST00000428555 RARBP10826 455 aa11.1□□□□□ -0.63
TRIM39-208ENST00000428555 SYN1P17600 705 aa11.1□□□□□ -0.63
TRIM39-208ENST00000428555 ADCYAP1R1P41586 468 aa11.1□□□□□ -0.63
TRIM39-208ENST00000428555 TRDNQ13061 729 aa11.1□□□□□ -0.63
TRIM39-208ENST00000428555 BAATQ14032 418 aaPredicted RBP11.1□□□□□ -0.63
TRIM39-208ENST00000428555 LRRC41Q15345 812 aa11.1□□□□□ -0.63
TRIM39-208ENST00000428555 NSMFQ6X4W1 530 aa11.1□□□□□ -0.63
TRIM39-208ENST00000428555 ARMCX2Q7L311 632 aa11.1□□□□□ -0.63
TRIM39-208ENST00000428555 CCDC144CPQ8IYA2 1237 aa11.1□□□□□ -0.63
TRIM39-208ENST00000428555 FERMT2Q96AC1 680 aa11.1□□□□□ -0.63
TRIM39-208ENST00000428555 LENG1Q96BZ8 264 aaPredicted RBP11.1□□□□□ -0.63
TRIM39-208ENST00000428555 UBAC1Q9BSL1 405 aa11.1□□□□□ -0.63
TRIM39-208ENST00000428555 VAT1LQ9HCJ6 419 aa11.1□□□□□ -0.63
TRIM39-208ENST00000428555 XPNPEP3Q9NQH7 507 aa11.1□□□□□ -0.63
TRIM39-208ENST00000428555 CYP39A1Q9NYL5 469 aa11.1□□□□□ -0.63
TRIM39-208ENST00000428555 PCDH10Q9P2E7 1040 aa11.1□□□□□ -0.63
TRIM39-208ENST00000428555 RBM27Q9P2N5 1060 aaKnown RBP11.1□□□□□ -0.63
TRIM39-208ENST00000428555 ZHX1Q9UKY1 873 aaPredicted RBP11.1□□□□□ -0.63
TRIM39-208ENST00000428555 FAM184BQ9ULE4 1060 aa11.1□□□□□ -0.63
TRIM39-208ENST00000428555 DDX49Q9Y6V7 483 aaKnown RBP11.1□□□□□ -0.63
TRIM39-208ENST00000428555 TNKSO95271 1327 aa11.09□□□□□ -0.63
TRIM39-208ENST00000428555 KBTBD13C9JR72 458 aa11.09□□□□□ -0.63
TRIM39-208ENST00000428555 E7EWF7 191 aa11.09□□□□□ -0.63
TRIM39-208ENST00000428555 AKR1A1P14550 325 aa11.09□□□□□ -0.63
TRIM39-208ENST00000428555 SEC23AQ15436 765 aa11.09□□□□□ -0.63
TRIM39-208ENST00000428555 GPATCH4Q5T3I0 446 aaKnown RBP11.09□□□□□ -0.63
TRIM39-208ENST00000428555 IFIT1BQ5T764 474 aaKnown RBP11.09□□□□□ -0.63
TRIM39-208ENST00000428555 KIAA1211Q6ZU35 1233 aa11.09□□□□□ -0.63
TRIM39-208ENST00000428555 CHST3Q7LGC8 479 aa11.09□□□□□ -0.63
TRIM39-208ENST00000428555 ABHD16BQ9H3Z7 469 aa11.09□□□□□ -0.63
TRIM39-208ENST00000428555 RBM8AQ9Y5S9 174 aaKnown RBP11.09□□□□□ -0.63
TRIM39-208ENST00000428555 TRIOBPQ9H2D6 2365 aa11.09□□□□□ -0.63
TRIM39-208ENST00000428555 NFIBO00712 420 aa11.08□□□□□ -0.64
TRIM39-208ENST00000428555 IFIT3O14879 490 aaKnown RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms