RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 MRVI1Q9Y6F6 885 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 ASTN2O75129 1339 aaPredicted RBP10.77□□□□□ -0.69
HMGB4-201ENST00000425537 SIPA1L1O43166 1804 aa10.77□□□□□ -0.69
HMGB4-201ENST00000425537 BECN2A8MW95 431 aa10.76□□□□□ -0.69
HMGB4-201ENST00000425537 GOLGA6L6A8MZA4 724 aa10.76□□□□□ -0.69
HMGB4-201ENST00000425537 KIF3CO14782 793 aa10.76□□□□□ -0.69
HMGB4-201ENST00000425537 ZBTB5O15062 677 aa10.76□□□□□ -0.69
HMGB4-201ENST00000425537 SMC2O95347 1197 aa10.76□□□□□ -0.69
HMGB4-201ENST00000425537 TPM3P06753 285 aa10.76□□□□□ -0.69
HMGB4-201ENST00000425537 LMOD1P29536 600 aaPredicted RBP10.76□□□□□ -0.69
HMGB4-201ENST00000425537 PRPHP41219 470 aa10.76□□□□□ -0.69
HMGB4-201ENST00000425537 ZNF280AP59817 542 aaPredicted RBP10.76□□□□□ -0.69
HMGB4-201ENST00000425537 DLK2Q6UY11 383 aa10.76□□□□□ -0.69
HMGB4-201ENST00000425537 KRBA2Q6ZNG9 492 aa10.76□□□□□ -0.69
HMGB4-201ENST00000425537 ZBED3Q96IU2 234 aaPredicted RBP10.76□□□□□ -0.69
HMGB4-201ENST00000425537 PDLIM2Q96JY6 352 aa10.76□□□□□ -0.69
HMGB4-201ENST00000425537 DNAJC18Q9H819 358 aa10.76□□□□□ -0.69
HMGB4-201ENST00000425537 VAT1LQ9HCJ6 419 aa10.76□□□□□ -0.69
HMGB4-201ENST00000425537 DACH1Q9UI36 760 aa10.76□□□□□ -0.69
HMGB4-201ENST00000425537 CNOT7Q9UIV1 285 aaKnown RBP10.76□□□□□ -0.69
HMGB4-201ENST00000425537 HACL1Q9UJ83 578 aa10.76□□□□□ -0.69
HMGB4-201ENST00000425537 PCDHA6Q9UN73 950 aa10.76□□□□□ -0.69
HMGB4-201ENST00000425537 PCDHA8Q9Y5H6 950 aa10.76□□□□□ -0.69
HMGB4-201ENST00000425537 FRMPD2Q68DX3 1309 aaPredicted RBP10.76□□□□□ -0.69
HMGB4-201ENST00000425537 ZC3H4Q9UPT8 1303 aaKnown RBP10.76□□□□□ -0.69
HMGB4-201ENST00000425537 CLRN2A0PK11 232 aa10.75□□□□□ -0.69
HMGB4-201ENST00000425537 SMTNL1A8MU46 457 aa10.75□□□□□ -0.69
HMGB4-201ENST00000425537 PTMAP06454 111 aaKnown RBP10.75□□□□□ -0.69
HMGB4-201ENST00000425537 EPHX2P34913 555 aa10.75□□□□□ -0.69
HMGB4-201ENST00000425537 NLRP12P59046 1061 aa10.75□□□□□ -0.69
HMGB4-201ENST00000425537 PTGDRQ13258 359 aa10.75□□□□□ -0.69
HMGB4-201ENST00000425537 SEPT2Q15019 361 aa10.75□□□□□ -0.69
HMGB4-201ENST00000425537 ZNF174Q15697 407 aa10.75□□□□□ -0.69
HMGB4-201ENST00000425537 NEK8Q86SG6 692 aa10.75□□□□□ -0.69
HMGB4-201ENST00000425537 ADGRF4Q8IZF3 695 aa10.75□□□□□ -0.69
HMGB4-201ENST00000425537 TRIML1Q8N9V2 468 aa10.75□□□□□ -0.69
HMGB4-201ENST00000425537 CUL5Q93034 780 aa10.75□□□□□ -0.69
HMGB4-201ENST00000425537 BPIFA3Q9BQP9 254 aa10.75□□□□□ -0.69
HMGB4-201ENST00000425537 UBA5Q9GZZ9 404 aa10.75□□□□□ -0.69
HMGB4-201ENST00000425537 TAF1DQ9H5J8 278 aaPredicted RBP10.75□□□□□ -0.69
HMGB4-201ENST00000425537 JMJD4Q9H9V9 463 aa10.75□□□□□ -0.69
HMGB4-201ENST00000425537 GPRC5DQ9NZD1 345 aa10.75□□□□□ -0.69
HMGB4-201ENST00000425537 CLEC11AQ9Y240 323 aa10.75□□□□□ -0.69
HMGB4-201ENST00000425537 F5H6K3 240 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 H7C1D1 291 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 M0R2N6 131 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 RAD21O60216 631 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 GH2P01242 217 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 ASNSP08243 561 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 BMP3P12645 472 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 GCFC2P16383 781 aaKnown RBP10.74□□□□□ -0.69
HMGB4-201ENST00000425537 MCM7P33993 719 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 FMR1Q06787 632 aaKnown RBP eCLIP10.74□□□□□ -0.69
HMGB4-201ENST00000425537 KLRC3Q07444 240 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 IKQ13123 557 aaPredicted RBP10.74□□□□□ -0.69
HMGB4-201ENST00000425537 CT47A1Q5JQC4 288 aaPredicted RBP10.74□□□□□ -0.69
HMGB4-201ENST00000425537 DTHD1Q6ZMT9 781 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 IQUBQ8NA54 791 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 CHURC1Q8WUH1 139 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 SHISA4Q96DD7 197 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 MTMR8Q96EF0 704 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 L3MBTL3Q96JM7 780 aaPredicted RBP10.74□□□□□ -0.69
HMGB4-201ENST00000425537 AK8Q96MA6 479 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 CLIC6Q96NY7 704 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 RAB34Q9BZG1 259 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 CSRNP2Q9H175 543 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 CBX8Q9HC52 389 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 RIC8AQ9NPQ8 531 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 TUBE1Q9UJT0 475 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 SCN4AP35499 1836 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 CNTNAP1P78357 1384 aa10.74□□□□□ -0.69
HMGB4-201ENST00000425537 BAZ2BQ9UIF8 2168 aaKnown RBP10.73□□□□□ -0.69
HMGB4-201ENST00000425537 VWA3AA6NCI4 1184 aa10.73□□□□□ -0.69
HMGB4-201ENST00000425537 FAM196BA6NMK8 535 aa10.73□□□□□ -0.69
HMGB4-201ENST00000425537 WNT10BO00744 389 aa10.73□□□□□ -0.69
HMGB4-201ENST00000425537 POLR2DO15514 142 aaKnown RBP10.73□□□□□ -0.69
HMGB4-201ENST00000425537 GDF11O95390 407 aa10.73□□□□□ -0.69
HMGB4-201ENST00000425537 SLFN14P0C7P3 912 aa10.73□□□□□ -0.69
HMGB4-201ENST00000425537 VEGFAP15692 232 aaPredicted RBP10.73□□□□□ -0.69
HMGB4-201ENST00000425537 HIRAP54198 1017 aaPredicted RBP10.73□□□□□ -0.69
HMGB4-201ENST00000425537 MAP3K10Q02779 954 aa10.73□□□□□ -0.69
HMGB4-201ENST00000425537 SEMA3FQ13275 785 aa10.73□□□□□ -0.69
HMGB4-201ENST00000425537 DHX8Q14562 1220 aaKnown RBP10.73□□□□□ -0.69
HMGB4-201ENST00000425537 TMEM266Q2M3C6 531 aa10.73□□□□□ -0.69
HMGB4-201ENST00000425537 SLC35G1Q2M3R5 365 aa10.73□□□□□ -0.69
HMGB4-201ENST00000425537 DCAF15Q66K64 600 aa10.73□□□□□ -0.69
HMGB4-201ENST00000425537 BTNL9Q6UXG8 535 aa10.73□□□□□ -0.69
HMGB4-201ENST00000425537 FAM160B2Q86V87 743 aa10.73□□□□□ -0.69
HMGB4-201ENST00000425537 APOBEC3FQ8IUX4 373 aaKnown RBP10.73□□□□□ -0.69
HMGB4-201ENST00000425537 SMARCE1Q969G3 411 aa10.73□□□□□ -0.69
HMGB4-201ENST00000425537 AMNQ9BXJ7 453 aa10.73□□□□□ -0.69
HMGB4-201ENST00000425537 GTPBP4Q9BZE4 634 aaKnown RBP10.73□□□□□ -0.69
HMGB4-201ENST00000425537 DNAJC25Q9H1X3 360 aa10.73□□□□□ -0.69
HMGB4-201ENST00000425537 PNMA2Q9UL42 364 aa10.73□□□□□ -0.69
HMGB4-201ENST00000425537 ZBTB21Q9ULJ3 1066 aa10.73□□□□□ -0.69
HMGB4-201ENST00000425537 TMX2Q9Y320 296 aa10.73□□□□□ -0.69
HMGB4-201ENST00000425537 FAM205CA6NFA0 338 aa10.72□□□□□ -0.69
HMGB4-201ENST00000425537 PLA2G6O60733 806 aa10.72□□□□□ -0.69
HMGB4-201ENST00000425537 ADCY5O95622 1261 aa10.72□□□□□ -0.69
HMGB4-201ENST00000425537 NDUFB10O96000 172 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms