RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 MGAMO43451 1857 aa19.73■□□□□ 0.75
COL7A1-202ENST00000422991 DHX16O60231 1041 aaKnown RBP19.73■□□□□ 0.75
COL7A1-202ENST00000422991 MCM2P49736 904 aa19.73■□□□□ 0.75
COL7A1-202ENST00000422991 SNAP25P60880 206 aa19.73■□□□□ 0.75
COL7A1-202ENST00000422991 ERVK-9P63128 1117 aa19.73■□□□□ 0.75
COL7A1-202ENST00000422991 ERVK-24P63145 666 aa19.73■□□□□ 0.75
COL7A1-202ENST00000422991 SCRN1Q12765 414 aa19.73■□□□□ 0.75
COL7A1-202ENST00000422991 GTF3C6Q969F1 213 aa19.73■□□□□ 0.75
COL7A1-202ENST00000422991 ZNF536O15090 1300 aa19.73■□□□□ 0.75
COL7A1-202ENST00000422991 RBBP6Q7Z6E9 1792 aaKnown RBP19.72■□□□□ 0.75
COL7A1-202ENST00000422991 ZSWIM8A7E2V4 1837 aa19.72■□□□□ 0.75
COL7A1-202ENST00000422991 ATP2A1O14983 1001 aa19.72■□□□□ 0.75
COL7A1-202ENST00000422991 CAPN15O75808 1086 aa19.72■□□□□ 0.75
COL7A1-202ENST00000422991 OAZ1P54368 228 aa19.72■□□□□ 0.75
COL7A1-202ENST00000422991 NTRK3Q16288 839 aa19.72■□□□□ 0.75
COL7A1-202ENST00000422991 CDC37Q16543 378 aaPredicted RBP19.72■□□□□ 0.75
COL7A1-202ENST00000422991 NOM1Q5C9Z4 860 aaKnown RBP19.72■□□□□ 0.75
COL7A1-202ENST00000422991 GPRC5AQ8NFJ5 357 aa19.72■□□□□ 0.75
COL7A1-202ENST00000422991 ZSCAN31Q96LW9 406 aaPredicted RBP19.72■□□□□ 0.75
COL7A1-202ENST00000422991 SPATC1LQ9H0A9 340 aa19.72■□□□□ 0.75
COL7A1-202ENST00000422991 VAT1LQ9HCJ6 419 aa19.72■□□□□ 0.75
COL7A1-202ENST00000422991 SH2B1Q9NRF2 756 aaPredicted RBP19.72■□□□□ 0.75
COL7A1-202ENST00000422991 CTDP1Q9Y5B0 961 aaPredicted RBP19.72■□□□□ 0.75
COL7A1-202ENST00000422991 ST3GAL1Q11201 340 aa19.71■□□□□ 0.75
COL7A1-202ENST00000422991 CCDC174Q6PII3 467 aa19.71■□□□□ 0.75
COL7A1-202ENST00000422991 NECAB1Q8N987 351 aa19.71■□□□□ 0.75
COL7A1-202ENST00000422991 ABHD8Q96I13 439 aa19.71■□□□□ 0.75
COL7A1-202ENST00000422991 PIGSQ96S52 555 aa19.71■□□□□ 0.75
COL7A1-202ENST00000422991 TEX13BQ9BXU2 312 aa19.71■□□□□ 0.75
COL7A1-202ENST00000422991 RAVER2Q9HCJ3 691 aaKnown RBP19.71■□□□□ 0.75
COL7A1-202ENST00000422991 SMCHD1A6NHR9 2005 aa19.71■□□□□ 0.75
COL7A1-202ENST00000422991 GPR25O00155 361 aa19.7■□□□□ 0.74
COL7A1-202ENST00000422991 ZBTB5O15062 677 aa19.7■□□□□ 0.74
COL7A1-202ENST00000422991 ICAM1P05362 532 aa19.7■□□□□ 0.74
COL7A1-202ENST00000422991 IFNAR1P17181 557 aa19.7■□□□□ 0.74
COL7A1-202ENST00000422991 PLS1Q14651 629 aa19.7■□□□□ 0.74
COL7A1-202ENST00000422991 QRICH1Q2TAL8 776 aa19.7■□□□□ 0.74
COL7A1-202ENST00000422991 Q3C1V9 767 aa19.7■□□□□ 0.74
COL7A1-202ENST00000422991 SNRNP48Q6IEG0 339 aaKnown RBP19.7■□□□□ 0.74
COL7A1-202ENST00000422991 HOMER1Q86YM7 354 aa19.7■□□□□ 0.74
COL7A1-202ENST00000422991 CPXCR1Q8N123 301 aa19.7■□□□□ 0.74
COL7A1-202ENST00000422991 CCDC82Q8N4S0 544 aa19.7■□□□□ 0.74
COL7A1-202ENST00000422991 RRP36Q96EU6 259 aaKnown RBP19.7■□□□□ 0.74
COL7A1-202ENST00000422991 PLXNB2O15031 1838 aa19.69■□□□□ 0.74
COL7A1-202ENST00000422991 CPLX1O14810 134 aa19.69■□□□□ 0.74
COL7A1-202ENST00000422991 STAT3P40763 770 aa19.69■□□□□ 0.74
COL7A1-202ENST00000422991 CCNA1P78396 465 aa19.69■□□□□ 0.74
COL7A1-202ENST00000422991 RIOX2Q8IUF8 465 aa19.69■□□□□ 0.74
COL7A1-202ENST00000422991 TMX3Q96JJ7 454 aa19.69■□□□□ 0.74
COL7A1-202ENST00000422991 AGBL1Q96MI9 1066 aa19.69■□□□□ 0.74
COL7A1-202ENST00000422991 MOV10L1Q9BXT6 1211 aaKnown RBP19.69■□□□□ 0.74
COL7A1-202ENST00000422991 ZNF236Q9UL36 1845 aa19.68■□□□□ 0.74
COL7A1-202ENST00000422991 PNMA6FA0A0J9YX94 578 aa19.68■□□□□ 0.74
COL7A1-202ENST00000422991 PPP1R11O60927 126 aaPredicted RBP19.68■□□□□ 0.74
COL7A1-202ENST00000422991 SP3Q02447 781 aa19.68■□□□□ 0.74
COL7A1-202ENST00000422991 CPLX2Q6PUV4 134 aaKnown RBP19.68■□□□□ 0.74
COL7A1-202ENST00000422991 SHCBP1Q8NEM2 672 aa19.68■□□□□ 0.74
COL7A1-202ENST00000422991 PIBF1Q8WXW3 757 aa19.68■□□□□ 0.74
COL7A1-202ENST00000422991 PHKBQ93100 1093 aa19.68■□□□□ 0.74
COL7A1-202ENST00000422991 SNX21Q969T3 373 aa19.68■□□□□ 0.74
COL7A1-202ENST00000422991 MCOLN1Q9GZU1 580 aa19.68■□□□□ 0.74
COL7A1-202ENST00000422991 PORCNQ9H237 461 aa19.68■□□□□ 0.74
COL7A1-202ENST00000422991 SEC63Q9UGP8 760 aaKnown RBP19.68■□□□□ 0.74
COL7A1-202ENST00000422991 PNMA2Q9UL42 364 aa19.68■□□□□ 0.74
COL7A1-202ENST00000422991 CCPG1Q9ULG6 757 aa19.68■□□□□ 0.74
COL7A1-202ENST00000422991 hCG_1642624A0A1W2PR95 340 aa19.67■□□□□ 0.74
COL7A1-202ENST00000422991 CDKL5O76039 1030 aa19.67■□□□□ 0.74
COL7A1-202ENST00000422991 CTDNEP1O95476 244 aa19.67■□□□□ 0.74
COL7A1-202ENST00000422991 SLC25A27O95847 323 aa19.67■□□□□ 0.74
COL7A1-202ENST00000422991 TAL1P17542 331 aaPredicted RBP19.67■□□□□ 0.74
COL7A1-202ENST00000422991 COPB2P35606 906 aa19.67■□□□□ 0.74
COL7A1-202ENST00000422991 LACTBP83111 547 aaPredicted RBP19.67■□□□□ 0.74
COL7A1-202ENST00000422991 CTU1Q7Z7A3 348 aaKnown RBP19.67■□□□□ 0.74
COL7A1-202ENST00000422991 FBXO11Q86XK2 927 aa19.67■□□□□ 0.74
COL7A1-202ENST00000422991 CCDC83Q8IWF9 413 aa19.67■□□□□ 0.74
COL7A1-202ENST00000422991 ZNF296Q8WUU4 475 aaPredicted RBP19.67■□□□□ 0.74
COL7A1-202ENST00000422991 RNF26Q9BY78 433 aaPredicted RBP19.67■□□□□ 0.74
COL7A1-202ENST00000422991 RIPK3Q9Y572 518 aa19.67■□□□□ 0.74
COL7A1-202ENST00000422991 PRPF3O43395 683 aaKnown RBP19.66■□□□□ 0.74
COL7A1-202ENST00000422991 FKTNO75072 461 aa19.66■□□□□ 0.74
COL7A1-202ENST00000422991 FMNL1O95466 1100 aaPredicted RBP19.66■□□□□ 0.74
COL7A1-202ENST00000422991 ERCC3P19447 782 aa19.66■□□□□ 0.74
COL7A1-202ENST00000422991 TKFCQ3LXA3 575 aa19.66■□□□□ 0.74
COL7A1-202ENST00000422991 NSUN7Q8NE18 718 aaKnown RBP19.66■□□□□ 0.74
COL7A1-202ENST00000422991 AMNQ9BXJ7 453 aa19.66■□□□□ 0.74
COL7A1-202ENST00000422991 SLC26A6Q9BXS9 759 aa19.66■□□□□ 0.74
COL7A1-202ENST00000422991 RBM27Q9P2N5 1060 aaKnown RBP19.66■□□□□ 0.74
COL7A1-202ENST00000422991 V9GY48 417 aaPredicted RBP19.66■□□□□ 0.74
COL7A1-202ENST00000422991 PPFIA3O75145 1194 aa19.65■□□□□ 0.74
COL7A1-202ENST00000422991 ALAS1P13196 640 aa19.65■□□□□ 0.74
COL7A1-202ENST00000422991 MAPK4P31152 587 aa19.65■□□□□ 0.74
COL7A1-202ENST00000422991 USH1GQ495M9 461 aa19.65■□□□□ 0.74
COL7A1-202ENST00000422991 NCAPG2Q86XI2 1143 aa19.65■□□□□ 0.74
COL7A1-202ENST00000422991 TRIM22Q8IYM9 498 aa19.65■□□□□ 0.74
COL7A1-202ENST00000422991 MROH8Q9H579 483 aa19.65■□□□□ 0.74
COL7A1-202ENST00000422991 EFCC1Q9HA90 598 aa19.65■□□□□ 0.74
COL7A1-202ENST00000422991 RNF146Q9NTX7 359 aa19.65■□□□□ 0.74
COL7A1-202ENST00000422991 ABCB11O95342 1321 aa19.65■□□□□ 0.74
COL7A1-202ENST00000422991 STK36Q9NRP7 1315 aa19.65■□□□□ 0.74
COL7A1-202ENST00000422991 CTGFP29279 349 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms