RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 BCAMP50895 628 aa12.34□□□□□ -0.43
LIMS1-207ENST00000422797 SBK1Q52WX2 424 aa12.34□□□□□ -0.43
LIMS1-207ENST00000422797 EARS2Q5JPH6 523 aaKnown RBP12.34□□□□□ -0.43
LIMS1-207ENST00000422797 DTHD1Q6ZMT9 781 aa12.34□□□□□ -0.43
LIMS1-207ENST00000422797 SMYD4Q8IYR2 804 aaPredicted RBP12.34□□□□□ -0.43
LIMS1-207ENST00000422797 MIGA1Q8NAN2 632 aa12.34□□□□□ -0.43
LIMS1-207ENST00000422797 GIMAP8Q8ND71 665 aaPredicted RBP12.34□□□□□ -0.43
LIMS1-207ENST00000422797 HELBQ8NG08 1087 aaPredicted RBP12.34□□□□□ -0.43
LIMS1-207ENST00000422797 PPM1EQ8WY54 764 aa12.34□□□□□ -0.43
LIMS1-207ENST00000422797 SHISA4Q96DD7 197 aa12.34□□□□□ -0.43
LIMS1-207ENST00000422797 PURBQ96QR8 312 aaKnown RBP12.34□□□□□ -0.43
LIMS1-207ENST00000422797 ATP8A2Q9NTI2 1148 aa12.34□□□□□ -0.43
LIMS1-207ENST00000422797 GUCA1BQ9UMX6 200 aa12.34□□□□□ -0.43
LIMS1-207ENST00000422797 A0A0U1RQG5 324 aaPredicted RBP12.33□□□□□ -0.44
LIMS1-207ENST00000422797 RNF40O75150 1001 aa12.33□□□□□ -0.44
LIMS1-207ENST00000422797 FGFR1OPO95684 399 aaKnown RBP12.33□□□□□ -0.44
LIMS1-207ENST00000422797 PRCPP42785 496 aa12.33□□□□□ -0.44
LIMS1-207ENST00000422797 CAVIN4Q5BKX8 364 aa12.33□□□□□ -0.44
LIMS1-207ENST00000422797 PIK3AP1Q6ZUJ8 805 aa12.33□□□□□ -0.44
LIMS1-207ENST00000422797 BLIDQ8IZY5 108 aa12.33□□□□□ -0.44
LIMS1-207ENST00000422797 CMTR1Q8N1G2 835 aaKnown RBP12.33□□□□□ -0.44
LIMS1-207ENST00000422797 NOA1Q8NC60 698 aaKnown RBP12.33□□□□□ -0.44
LIMS1-207ENST00000422797 TRIM58Q8NG06 486 aa12.33□□□□□ -0.44
LIMS1-207ENST00000422797 CAGE1Q8TC20 777 aa12.33□□□□□ -0.44
LIMS1-207ENST00000422797 SMARCC1Q92922 1105 aaPredicted RBP12.33□□□□□ -0.44
LIMS1-207ENST00000422797 TRIM47Q96LD4 638 aa12.33□□□□□ -0.44
LIMS1-207ENST00000422797 LZTS2Q9BRK4 669 aa12.33□□□□□ -0.44
LIMS1-207ENST00000422797 CRNKL1Q9BZJ0 848 aaKnown RBP12.33□□□□□ -0.44
LIMS1-207ENST00000422797 FAM204AQ9H8W3 233 aa12.33□□□□□ -0.44
LIMS1-207ENST00000422797 HPCAL4Q9UM19 191 aa12.33□□□□□ -0.44
LIMS1-207ENST00000422797 PCDHA4Q9UN74 947 aa12.33□□□□□ -0.44
LIMS1-207ENST00000422797 REXO2Q9Y3B8 237 aaKnown RBP12.33□□□□□ -0.44
LIMS1-207ENST00000422797 LAMB1P07942 1786 aa12.33□□□□□ -0.44
LIMS1-207ENST00000422797 MAST2Q6P0Q8 1798 aa12.33□□□□□ -0.44
LIMS1-207ENST00000422797 SHOX2O60902 331 aaPredicted RBP12.32□□□□□ -0.44
LIMS1-207ENST00000422797 TACC1O75410 805 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 UBA7P41226 1012 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 VAV2P52735 878 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 EIF5P55010 431 aaKnown RBP12.32□□□□□ -0.44
LIMS1-207ENST00000422797 AMPD3Q01432 767 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 CHRNDQ07001 517 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 KIF5AQ12840 1032 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 SPA17Q15506 151 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 FKBP15Q5T1M5 1219 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 FOXR2Q6PJQ5 311 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 MMGT1Q8N4V1 131 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 ANKS1AQ92625 1134 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 ERGIC2Q96RQ1 377 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 TTYH3Q9C0H2 523 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 BLZF1Q9H2G9 400 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 TSKSQ9UJT2 592 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 FAM184BQ9ULE4 1060 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 ZNF652Q9Y2D9 606 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 JRKLQ9Y4A0 524 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 PHLPP1O60346 1717 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 CCDC194A0A1B0GVG4 234 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 NUTM2BA6NNL0 878 aaPredicted RBP12.32□□□□□ -0.44
LIMS1-207ENST00000422797 LRRIQ3A6PVS8 624 aaPredicted RBP12.32□□□□□ -0.44
LIMS1-207ENST00000422797 NUTM2EB1AL46 878 aaPredicted RBP12.32□□□□□ -0.44
LIMS1-207ENST00000422797 GOLGA8KD6RF30 607 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 OPA1O60313 960 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 PRDM1O75626 825 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 TCP1P17987 556 aaKnown RBP12.32□□□□□ -0.44
LIMS1-207ENST00000422797 TRIM21P19474 475 aaKnown RBP12.32□□□□□ -0.44
LIMS1-207ENST00000422797 CCNE1P24864 410 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 TNFRSF8P28908 595 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 HNRNPH3P31942 346 aaKnown RBP12.32□□□□□ -0.44
LIMS1-207ENST00000422797 MCM7P33993 719 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 HERVK_113P62684 666 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 APBA1Q02410 837 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 NNTQ13423 1086 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 SUSD4Q5VX71 490 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 NCAPH2Q6IBW4 605 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 DGKHQ86XP1 1220 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 IRF2BP1Q8IU81 584 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 ZSCAN29Q8IWY8 852 aaPredicted RBP12.32□□□□□ -0.44
LIMS1-207ENST00000422797 EFCAB13Q8IY85 973 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 SRBD1Q8N5C6 995 aaKnown RBP12.32□□□□□ -0.44
LIMS1-207ENST00000422797 C4orf32Q8N8J7 132 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 RASSF8Q8NHQ8 419 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 SECISBP2LQ93073 1101 aaKnown RBP12.32□□□□□ -0.44
LIMS1-207ENST00000422797 ALS2CR12Q96Q35 445 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 EDEM3Q9BZQ6 932 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 KBTBD4Q9NVX7 518 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 RNF14Q9UBS8 474 aa12.32□□□□□ -0.44
LIMS1-207ENST00000422797 SCN7AQ01118 1682 aa12.31□□□□□ -0.44
LIMS1-207ENST00000422797 MYH13Q9UKX3 1938 aa12.31□□□□□ -0.44
LIMS1-207ENST00000422797 CACNA1SQ13698 1873 aa12.31□□□□□ -0.44
LIMS1-207ENST00000422797 A0A0U1RQJ8 604 aa12.31□□□□□ -0.44
LIMS1-207ENST00000422797 PRPF6O94906 941 aaKnown RBP12.31□□□□□ -0.44
LIMS1-207ENST00000422797 CASP1P29466 404 aa12.31□□□□□ -0.44
LIMS1-207ENST00000422797 CORO7P57737 925 aa12.31□□□□□ -0.44
LIMS1-207ENST00000422797 GLE1Q53GS7 698 aaKnown RBP12.31□□□□□ -0.44
LIMS1-207ENST00000422797 DNAJC21Q5F1R6 531 aaKnown RBP12.31□□□□□ -0.44
LIMS1-207ENST00000422797 TTI2Q6NXR4 508 aa12.31□□□□□ -0.44
LIMS1-207ENST00000422797 CCNI2Q6ZMN8 369 aaPredicted RBP12.31□□□□□ -0.44
LIMS1-207ENST00000422797 FAM76AQ8TAV0 307 aa12.31□□□□□ -0.44
LIMS1-207ENST00000422797 SDR42E1Q8WUS8 393 aa12.31□□□□□ -0.44
LIMS1-207ENST00000422797 ATRIPQ8WXE1 791 aa12.31□□□□□ -0.44
LIMS1-207ENST00000422797 CHP1Q99653 195 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms