RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 GPKOWQ92917 476 aaPredicted RBP eCLIP6.85□□□□□ -1.31
HMGB3-202ENST00000419110 TEPSINQ96N21 525 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 WRNIP1Q96S55 665 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 CRISPLD2Q9H0B8 497 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 AS3MTQ9HBK9 375 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 GPCPD1Q9NPB8 672 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 PICK1Q9NRD5 415 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 CEP131Q9UPN4 1083 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 PLXNB2O15031 1838 aa6.85□□□□□ -1.31
HMGB3-202ENST00000419110 CCDC194A0A1B0GVG4 234 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 hCG_1642624A0A1W2PR95 340 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 ESYT2A0FGR8 921 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 GLTPD2A6NH11 291 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 KIF28PB7ZC32 967 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 STXBP3O00186 592 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 SOCS7O14512 581 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 WDR46O15213 610 aaKnown RBP6.84□□□□□ -1.31
HMGB3-202ENST00000419110 CTNND1O60716 968 aaKnown RBP6.84□□□□□ -1.31
HMGB3-202ENST00000419110 PRPF40AO75400 957 aaKnown RBP6.84□□□□□ -1.31
HMGB3-202ENST00000419110 BMP3P12645 472 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 EPHX2P34913 555 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 PSEN2P49810 448 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 ADCY7P51828 1080 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 STAT2P52630 851 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 USP14P54578 494 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 NLRP5P59047 1200 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 TRAF1Q13077 416 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 SF3A1Q15459 793 aaKnown RBP6.84□□□□□ -1.31
HMGB3-202ENST00000419110 PKN1Q16512 942 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 CDC37Q16543 378 aaPredicted RBP6.84□□□□□ -1.31
HMGB3-202ENST00000419110 SHROOM1Q2M3G4 852 aaPredicted RBP6.84□□□□□ -1.31
HMGB3-202ENST00000419110 RILPL1Q5EBL4 403 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 SYDE2Q5VT97 1194 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 WWC2Q6AWC2 1192 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 CCDC73Q6ZRK6 1079 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 KCTD1Q719H9 257 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 MIGA2Q7L4E1 593 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 KRT26Q7Z3Y9 468 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 SCYL3Q8IZE3 742 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 DAGLBQ8NCG7 672 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 LEO1Q8WVC0 666 aaPredicted RBP6.84□□□□□ -1.31
HMGB3-202ENST00000419110 LPAR1Q92633 364 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 MKL1Q969V6 931 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 PHF20Q9BVI0 1012 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 GLT8D2Q9H1C3 349 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 VCPKMTQ9H867 229 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 GDPD2Q9HCC8 539 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 LMBRD1Q9NUN5 540 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 POLR3EQ9NVU0 708 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 BARHL2Q9NY43 387 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 KCNJ14Q9UNX9 436 aa6.84□□□□□ -1.31
HMGB3-202ENST00000419110 V9GY48 417 aaPredicted RBP6.84□□□□□ -1.31
HMGB3-202ENST00000419110 LCTP09848 1927 aa6.84□□□□□ -1.32
HMGB3-202ENST00000419110 SMCHD1A6NHR9 2005 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 ADM5C9JUS6 153 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 UBE2Q2LH0YL09 131 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 TK2O00142 265 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 ZBTB5O15062 677 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 CYTH3O43739 400 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 PPP1R12BO60237 982 aaPredicted RBP6.83□□□□□ -1.32
HMGB3-202ENST00000419110 SLURP2P0DP57 97 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 U2AF2P26368 475 aaKnown RBP eCLIP6.83□□□□□ -1.32
HMGB3-202ENST00000419110 GNA11P29992 359 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 ME1P48163 572 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 IREB2P48200 963 aaKnown RBP6.83□□□□□ -1.32
HMGB3-202ENST00000419110 TRAPPC10P48553 1259 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 NASPP49321 788 aaPredicted RBP6.83□□□□□ -1.32
HMGB3-202ENST00000419110 MAP3K10Q02779 954 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 ZYXQ15942 572 aaKnown RBP6.83□□□□□ -1.32
HMGB3-202ENST00000419110 EAPPQ56P03 285 aaPredicted RBP6.83□□□□□ -1.32
HMGB3-202ENST00000419110 PPP1R15BQ5SWA1 713 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 NOL9Q5SY16 702 aaKnown RBP6.83□□□□□ -1.32
HMGB3-202ENST00000419110 NBPF12Q5TAG4 269 aaPredicted RBP6.83□□□□□ -1.32
HMGB3-202ENST00000419110 DMRTA1Q5VZB9 504 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 ANO1Q5XXA6 986 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 FAM173BQ6P4H8 233 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 KRT25Q7Z3Z0 450 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 PNMA8AQ86V59 439 aaPredicted RBP6.83□□□□□ -1.32
HMGB3-202ENST00000419110 FAM160B2Q86V87 743 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 BLIDQ8IZY5 108 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 REXO1Q8N1G1 1221 aaKnown RBP6.83□□□□□ -1.32
HMGB3-202ENST00000419110 OXER1Q8TDS5 423 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 ZC3H15Q8WU90 426 aaKnown RBP6.83□□□□□ -1.32
HMGB3-202ENST00000419110 CUL5Q93034 780 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 CHAMP1Q96JM3 812 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 USP28Q96RU2 1077 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 PIGSQ96S52 555 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 RIOX1Q9H6W3 641 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 C6orf50Q9HD87 102 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 GJB4Q9NTQ9 266 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 RTEL1Q9NZ71 1219 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 PGAP2Q9UHJ9 254 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 PCDHA4Q9UN74 947 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 TMX2Q9Y320 296 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 CSADQ9Y600 493 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 KIAA1217Q5T5P2 1943 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 PLXNA1Q9UIW2 1896 aa6.83□□□□□ -1.32
HMGB3-202ENST00000419110 WDR81Q562E7 1941 aa6.82□□□□□ -1.32
HMGB3-202ENST00000419110 PNMA6FA0A0J9YX94 578 aa6.82□□□□□ -1.32
HMGB3-202ENST00000419110 TRIM75PA6NK02 468 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms