RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 DCPSQ96C86 337 aaKnown RBP9.49□□□□□ -0.89
USP54-203ENST00000418501 CTAGE1Q96RT6 745 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 NAV1Q8NEY1 1877 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 ABCB11O95342 1321 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 FAM237AA0A1B0GTK4 181 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 CTNND1O60716 968 aaKnown RBP9.49□□□□□ -0.89
USP54-203ENST00000418501 NFIAQ12857 509 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 CDC37Q16543 378 aaPredicted RBP9.49□□□□□ -0.89
USP54-203ENST00000418501 STAG2Q8N3U4 1231 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 GSDMAQ96QA5 445 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 UBA5Q9GZZ9 404 aa9.49□□□□□ -0.89
USP54-203ENST00000418501 MYH2Q9UKX2 1941 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 hCG_1642624A0A1W2PR95 340 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 SLFN14P0C7P3 912 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 SNHG28P0DPA3 235 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 NOVP48745 357 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 USP11P51784 963 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 PTPAQ15257 358 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 ADGRF4Q8IZF3 695 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 DHX58Q96C10 678 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 CNOT7Q9UIV1 285 aaKnown RBP9.48□□□□□ -0.89
USP54-203ENST00000418501 ZBTB21Q9ULJ3 1066 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 POLR2DO15514 142 aaKnown RBP9.48□□□□□ -0.89
USP54-203ENST00000418501 GDF11O95390 407 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 JAKMIP3Q5VZ66 844 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 ZSCAN30Q86W11 494 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 FAM114A1Q8IWE2 563 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 MICALL2Q8IY33 904 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 PCDHB6Q9Y5E3 794 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 GCOM1H8Y6P7 765 aaPredicted RBP9.48□□□□□ -0.89
USP54-203ENST00000418501 ADCY5O95622 1261 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 SERPINC1P01008 464 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 POLR2MP0CAP2 368 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 CACNB3P54284 484 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 ZNF280AP59817 542 aaPredicted RBP9.48□□□□□ -0.89
USP54-203ENST00000418501 INF2Q27J81 1249 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 KRT26Q7Z3Y9 468 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 METTL16Q86W50 562 aaKnown RBP9.48□□□□□ -0.89
USP54-203ENST00000418501 MAF1Q9H063 256 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 DNAJC25Q9H1X3 360 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 STK17AQ9UEE5 414 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 FBXO2Q9UK22 296 aaPredicted RBP9.48□□□□□ -0.89
USP54-203ENST00000418501 PCDHA6Q9UN73 950 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 PCDHA8Q9Y5H6 950 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 TACC3Q9Y6A5 838 aa9.48□□□□□ -0.89
USP54-203ENST00000418501 LAMB1P07942 1786 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 IKBKBO14920 756 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 WDR46O15213 610 aaKnown RBP9.47□□□□□ -0.89
USP54-203ENST00000418501 GTPBP6O43824 516 aaPredicted RBP9.47□□□□□ -0.89
USP54-203ENST00000418501 PPP1R12BO60237 982 aaPredicted RBP9.47□□□□□ -0.89
USP54-203ENST00000418501 PLA2G6O60733 806 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 MYL5Q02045 173 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 COL9A3Q14050 684 aaPredicted RBP9.47□□□□□ -0.89
USP54-203ENST00000418501 MOXD1Q6UVY6 613 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 SULF1Q8IWU6 871 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 TMX2Q9Y320 296 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 DDTLA6NHG4 134 aaPredicted RBP9.47□□□□□ -0.89
USP54-203ENST00000418501 GMPSP49915 693 aaPredicted RBP9.47□□□□□ -0.89
USP54-203ENST00000418501 TSR1Q2NL82 804 aaKnown RBP9.47□□□□□ -0.89
USP54-203ENST00000418501 GPC2Q8N158 579 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 ENGASEQ8NFI3 743 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 NOC3LQ8WTT2 800 aaKnown RBP9.47□□□□□ -0.89
USP54-203ENST00000418501 CHAMP1Q96JM3 812 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 CCDC43Q96MW1 224 aaKnown RBP9.47□□□□□ -0.89
USP54-203ENST00000418501 CSRNP2Q9H175 543 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 VCPKMTQ9H867 229 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 MAP3K20Q9NYL2 800 aaKnown RBP9.47□□□□□ -0.89
USP54-203ENST00000418501 BIN2Q9UBW5 565 aaPredicted RBP9.47□□□□□ -0.89
USP54-203ENST00000418501 CHD4Q14839 1912 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 YDJCA8MPS7 323 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 KRT18P05783 430 aaKnown RBP9.47□□□□□ -0.89
USP54-203ENST00000418501 CAP2P40123 477 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 AXDND1Q5T1B0 1012 aaPredicted RBP9.47□□□□□ -0.89
USP54-203ENST00000418501 SV2BQ7L1I2 683 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 GAS2L3Q86XJ1 694 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 LRWD1Q9UFC0 647 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 TAF1P21675 1872 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 BICDL2A1A5D9 508 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 C19orf81C9J6K1 198 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 RASA3Q14644 834 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 KCTD1Q719H9 257 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 CABP7Q86V35 215 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 PDILTQ8N807 584 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 OXER1Q8TDS5 423 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 GMLQ99445 158 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 CBX8Q9HC52 389 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 EXOC1Q9NV70 894 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 CSADQ9Y600 493 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 MRVI1Q9Y6F6 885 aa9.47□□□□□ -0.89
USP54-203ENST00000418501 ERCC5P28715 1186 aaPredicted RBP9.46□□□□□ -0.89
USP54-203ENST00000418501 PABPC4Q13310 644 aaKnown RBP eCLIP9.46□□□□□ -0.89
USP54-203ENST00000418501 STXBP4Q6ZWJ1 553 aa9.46□□□□□ -0.89
USP54-203ENST00000418501 ILDR1Q86SU0 546 aaPredicted RBP9.46□□□□□ -0.89
USP54-203ENST00000418501 TBCKQ8TEA7 893 aa9.46□□□□□ -0.89
USP54-203ENST00000418501 TSG101Q99816 390 aa9.46□□□□□ -0.89
USP54-203ENST00000418501 JMJD4Q9H9V9 463 aa9.46□□□□□ -0.89
USP54-203ENST00000418501 TBX3O15119 743 aa9.46□□□□□ -0.9
USP54-203ENST00000418501 NDUFB10O96000 172 aa9.46□□□□□ -0.9
USP54-203ENST00000418501 SYMPKQ92797 1274 aaKnown RBP9.46□□□□□ -0.9
USP54-203ENST00000418501 GJB4Q9NTQ9 266 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms