RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 CTNND2Q9UQB3 1225 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 STRCQ7RTU9 1775 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 ZEB2O60315 1214 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 SCG2P13521 617 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 CYLC1P35663 651 aaPredicted RBP6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 ZBED6P86452 979 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 PTGDRQ13258 359 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 UBE4AQ14139 1066 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 WDR59Q6PJI9 974 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 NELFBQ8WX92 580 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 PIGBQ92521 554 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 PAGR1Q9BTK6 254 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 VPS18Q9P253 973 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 RNF14Q9UBS8 474 aa6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 TRMT112Q9UI30 125 aaKnown RBP6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 LUC7L2Q9Y383 392 aaKnown RBP6.44□□□□□ -1.38
CCDC88A-203ENST00000412148 BICDL2A1A5D9 508 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 LRRIQ3A6PVS8 624 aaPredicted RBP6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 KLRC4O43908 158 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 PARP1P09874 1014 aaKnown RBP6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 LMAN1P49257 510 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 HERVK_113P62684 666 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 STIM1Q13586 685 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 GLE1Q53GS7 698 aaKnown RBP6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 EARS2Q5JPH6 523 aaKnown RBP6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 RRAGBQ5VZM2 374 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 TTI2Q6NXR4 508 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 EFCAB13Q8IY85 973 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 ACRBPQ8NEB7 543 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 AENQ8WTP8 325 aaKnown RBP6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 NUP88Q99567 741 aaPredicted RBP6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 PRDM11Q9NQV5 511 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 DISC1Q9NRI5 854 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 COL4A1P02462 1669 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 MAGEB6P1A0A0J9YX57 407 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 PJA2O43164 708 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 ZMYND10O75800 440 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 SMARCA1P28370 1054 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 PRCPP42785 496 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 EIF5P55010 431 aaKnown RBP6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 SKOR1P84550 965 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 APBA1Q02410 837 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 IL17AQ16552 155 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 CCDC152Q4G0S7 254 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 IFIT1BQ5T764 474 aaKnown RBP6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 TMCO4Q5TGY1 634 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 LRRC31Q6UY01 552 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 SPATS2Q86XZ4 545 aaKnown RBP6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 NOA1Q8NC60 698 aaKnown RBP6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 AFAP1L1Q8TED9 768 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 PPM1EQ8WY54 764 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 ATP8A2Q9NTI2 1148 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 TCP11L1Q9NUJ3 509 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 GNL3LQ9NVN8 582 aaKnown RBP6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 PUF60Q9UHX1 559 aaKnown RBP6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 FAM184BQ9ULE4 1060 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 FAN1Q9Y2M0 1017 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 TTC26A0AVF1 554 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 RNF225M0QZC1 329 aaPredicted RBP6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 PSMA7O14818 248 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 KIF5BP33176 963 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 AFMP43652 599 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 NOP2P46087 812 aaKnown RBP6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 GNAQP50148 359 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 VAV2P52735 878 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 ALS2CLQ60I27 953 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 CCNI2Q6ZMN8 369 aaPredicted RBP6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 BRINP3Q76B58 766 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 SUGP1Q8IWZ8 645 aaKnown RBP6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 TRIM58Q8NG06 486 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 CABLES1Q8TDN4 633 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 CAVIN3Q969G5 261 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 VPS54Q9P1Q0 977 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 TSKSQ9UJT2 592 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 GGA2Q9UJY4 613 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 JRKLQ9Y4A0 524 aa6.43□□□□□ -1.38
CCDC88A-203ENST00000412148 MYH10P35580 1976 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 GOLGA8KD6RF30 607 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 SLC26A4O43511 780 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 CCNE1P24864 410 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 UBXN1Q04323 297 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 MCM6Q14566 821 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 TSR1Q2NL82 804 aaKnown RBP6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 NAALADL2Q58DX5 795 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 CCDC70Q6NSX1 233 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 EMBQ6PCB8 327 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 DGKHQ86XP1 1220 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 MREGQ8N565 214 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 C7orf25Q9BPX7 421 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 LZTS2Q9BRK4 669 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 INCENPQ9NQS7 918 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 ARPP21Q9UBL0 812 aaPredicted RBP6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 ASAP1Q9ULH1 1129 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 PCDHA4Q9UN74 947 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 PLAGL2Q9UPG8 496 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 ARFGEF1Q9Y6D6 1849 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 GREB1LQ9C091 1923 aaPredicted RBP6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 A0A0U1RQJ8 604 aa6.42□□□□□ -1.38
CCDC88A-203ENST00000412148 FAM205CA6NFA0 338 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms