RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 FGD4Q96M96 766 aa33.86■■■■□ 3.01
HMGB1-205ENST00000399494 STARD7Q9NQZ5 370 aa33.86■■■■□ 3.01
HMGB1-205ENST00000399494 FBXO40Q9UH90 709 aa33.86■■■■□ 3.01
HMGB1-205ENST00000399494 OAZ1P54368 228 aa33.85■■■■□ 3.01
HMGB1-205ENST00000399494 SLFN13Q68D06 897 aa33.85■■■■□ 3.01
HMGB1-205ENST00000399494 PHF6Q8IWS0 365 aaKnown RBP eCLIP33.85■■■■□ 3.01
HMGB1-205ENST00000399494 LRRC47Q8N1G4 583 aaKnown RBP33.85■■■■□ 3.01
HMGB1-205ENST00000399494 CDKN2AIPQ9NXV6 580 aaPredicted RBP33.85■■■■□ 3.01
HMGB1-205ENST00000399494 MYADML2A6NDP7 307 aa33.84■■■■□ 3.01
HMGB1-205ENST00000399494 DCDC2CA8MYV0 355 aa33.84■■■■□ 3.01
HMGB1-205ENST00000399494 BMP3P12645 472 aa33.84■■■■□ 3.01
HMGB1-205ENST00000399494 NACAP1Q9BZK3 213 aa33.84■■■■□ 3.01
HMGB1-205ENST00000399494 TTYH1Q9H313 450 aaPredicted RBP33.84■■■■□ 3.01
HMGB1-205ENST00000399494 ABHD16BQ9H3Z7 469 aa33.84■■■■□ 3.01
HMGB1-205ENST00000399494 CUL9Q8IWT3 2517 aa33.84■■■■□ 3.01
HMGB1-205ENST00000399494 ADCY6O43306 1168 aa33.83■■■■□ 3.01
HMGB1-205ENST00000399494 TSPY3P0CV98 308 aa33.83■■■■□ 3.01
HMGB1-205ENST00000399494 TSPY8P0CW00 308 aa33.83■■■■□ 3.01
HMGB1-205ENST00000399494 PDE1AP54750 535 aa33.83■■■■□ 3.01
HMGB1-205ENST00000399494 IRX5P78411 483 aaPredicted RBP33.83■■■■□ 3.01
HMGB1-205ENST00000399494 PDE4BQ07343 736 aa33.83■■■■□ 3.01
HMGB1-205ENST00000399494 PLIN4Q96Q06 1357 aa33.83■■■■□ 3.01
HMGB1-205ENST00000399494 CST5P28325 142 aaPredicted RBP33.82■■■■□ 3
HMGB1-205ENST00000399494 TFAP4Q01664 338 aa33.82■■■■□ 3
HMGB1-205ENST00000399494 FPGSQ05932 587 aa33.82■■■■□ 3
HMGB1-205ENST00000399494 RNPC3Q96LT9 517 aaKnown RBP33.82■■■■□ 3
HMGB1-205ENST00000399494 TMEM232C9JQI7 657 aa33.81■■■■□ 3
HMGB1-205ENST00000399494 FDX1P10109 184 aa33.81■■■■□ 3
HMGB1-205ENST00000399494 CCDC144BQ3MJ40 725 aa33.81■■■■□ 3
HMGB1-205ENST00000399494 ZMYM1Q5SVZ6 1142 aa33.81■■■■□ 3
HMGB1-205ENST00000399494 COL25A1Q9BXS0 654 aaPredicted RBP33.81■■■■□ 3
HMGB1-205ENST00000399494 ELP1O95163 1332 aa33.8■■■■□ 3
HMGB1-205ENST00000399494 CENPBP07199 599 aaPredicted RBP33.8■■■■□ 3
HMGB1-205ENST00000399494 CDK7P50613 346 aa33.8■■■■□ 3
HMGB1-205ENST00000399494 GJA9P57773 515 aa33.8■■■■□ 3
HMGB1-205ENST00000399494 PPARAQ07869 468 aa33.8■■■■□ 3
HMGB1-205ENST00000399494 ARMCX2Q7L311 632 aa33.8■■■■□ 3
HMGB1-205ENST00000399494 NAPBQ9H115 298 aa33.8■■■■□ 3
HMGB1-205ENST00000399494 UPF3AQ9H1J1 476 aaKnown RBP33.8■■■■□ 3
HMGB1-205ENST00000399494 SLC3A2P08195 630 aaKnown RBP33.79■■■■□ 3
HMGB1-205ENST00000399494 C6orf222P0C671 652 aaPredicted RBP33.79■■■■□ 3
HMGB1-205ENST00000399494 CNTN2Q02246 1040 aa33.79■■■■□ 3
HMGB1-205ENST00000399494 PCSK9Q8NBP7 692 aaKnown RBP33.79■■■■□ 3
HMGB1-205ENST00000399494 FSD1Q9BTV5 496 aa33.79■■■■□ 3
HMGB1-205ENST00000399494 KATNBL1Q9H079 304 aa33.79■■■■□ 3
HMGB1-205ENST00000399494 TIMP1P01033 207 aa33.78■■■■□ 3
HMGB1-205ENST00000399494 ASGR1P07306 291 aa33.78■■■■□ 3
HMGB1-205ENST00000399494 CCDC144CPQ8IYA2 1237 aa33.78■■■■□ 3
HMGB1-205ENST00000399494 CHURC1Q8WUH1 139 aa33.78■■■■□ 3
HMGB1-205ENST00000399494 GMCL1Q96IK5 515 aa33.78■■■■□ 3
HMGB1-205ENST00000399494 GLT1D1Q96MS3 346 aa33.78■■■■□ 3
HMGB1-205ENST00000399494 HOMER2Q9NSB8 354 aa33.78■■■■□ 3
HMGB1-205ENST00000399494 STAT2P52630 851 aa33.77■■■■□ 3
HMGB1-205ENST00000399494 FAM133AQ8N9E0 248 aa33.77■■■■□ 3
HMGB1-205ENST00000399494 STAG1Q8WVM7 1258 aa33.77■■■■□ 3
HMGB1-205ENST00000399494 MYLIPQ8WY64 445 aa33.77■■■■□ 3
HMGB1-205ENST00000399494 SPC25Q9HBM1 224 aa33.77■■■■□ 3
HMGB1-205ENST00000399494 TBX21Q9UL17 535 aa33.77■■■■□ 3
HMGB1-205ENST00000399494 ZNF536O15090 1300 aa33.77■■■■□ 3
HMGB1-205ENST00000399494 FAM160B2Q86V87 743 aa33.76■■■□□ 2.99
HMGB1-205ENST00000399494 AGBL1Q96MI9 1066 aa33.76■■■□□ 2.99
HMGB1-205ENST00000399494 ACAD9Q9H845 621 aa33.76■■■□□ 2.99
HMGB1-205ENST00000399494 CTAGE5O15320 804 aa33.75■■■□□ 2.99
HMGB1-205ENST00000399494 NEFLP07196 543 aa33.75■■■□□ 2.99
HMGB1-205ENST00000399494 MCCP23508 829 aa33.75■■■□□ 2.99
HMGB1-205ENST00000399494 GNASQ5JWF2 1037 aa33.75■■■□□ 2.99
HMGB1-205ENST00000399494 MAFAQ8NHW3 353 aaPredicted RBP33.75■■■□□ 2.99
HMGB1-205ENST00000399494 DDX52Q9Y2R4 599 aaKnown RBP eCLIP33.75■■■□□ 2.99
HMGB1-205ENST00000399494 MROH7Q68CQ1 1323 aa33.75■■■□□ 2.99
HMGB1-205ENST00000399494 FOXP2O15409 715 aa33.74■■■□□ 2.99
HMGB1-205ENST00000399494 PLA2G6O60733 806 aa33.74■■■□□ 2.99
HMGB1-205ENST00000399494 SLC1A4P43007 532 aa33.74■■■□□ 2.99
HMGB1-205ENST00000399494 NKX3-2P78367 333 aa33.74■■■□□ 2.99
HMGB1-205ENST00000399494 MFSD5Q6N075 450 aa33.74■■■□□ 2.99
HMGB1-205ENST00000399494 VTI1AQ96AJ9 217 aa33.74■■■□□ 2.99
HMGB1-205ENST00000399494 A1CFQ9NQ94 594 aaKnown RBP33.74■■■□□ 2.99
HMGB1-205ENST00000399494 INCENPQ9NQS7 918 aa33.74■■■□□ 2.99
HMGB1-205ENST00000399494 IL17RBQ9NRM6 502 aa33.74■■■□□ 2.99
HMGB1-205ENST00000399494 MCM3APO60318 1980 aa33.74■■■□□ 2.99
HMGB1-205ENST00000399494 EYSQ5T1H1 3165 aa33.73■■■□□ 2.99
HMGB1-205ENST00000399494 TMEM265A0A087WTH1 108 aa33.73■■■□□ 2.99
HMGB1-205ENST00000399494 HSFX4A0A1B0GTS1 333 aaPredicted RBP33.73■■■□□ 2.99
HMGB1-205ENST00000399494 HSFX3A0A1B0GWH4 333 aaPredicted RBP33.73■■■□□ 2.99
HMGB1-205ENST00000399494 SOWAHBA6NEL2 793 aa33.73■■■□□ 2.99
HMGB1-205ENST00000399494 ARVCFO00192 962 aa33.73■■■□□ 2.99
HMGB1-205ENST00000399494 PLEKHM2Q8IWE5 1019 aa33.73■■■□□ 2.99
HMGB1-205ENST00000399494 CHMP4CQ96CF2 233 aa33.73■■■□□ 2.99
HMGB1-205ENST00000399494 EVI5LQ96CN4 794 aa33.73■■■□□ 2.99
HMGB1-205ENST00000399494 RNF146Q9NTX7 359 aa33.73■■■□□ 2.99
HMGB1-205ENST00000399494 ISY1Q9ULR0 285 aaKnown RBP33.73■■■□□ 2.99
HMGB1-205ENST00000399494 TKFCQ3LXA3 575 aa33.72■■■□□ 2.99
HMGB1-205ENST00000399494 RCSD1Q6JBY9 416 aa33.72■■■□□ 2.99
HMGB1-205ENST00000399494 C16orf59Q7L2K0 433 aa33.72■■■□□ 2.99
HMGB1-205ENST00000399494 A0A0U1RQG5 324 aaPredicted RBP33.71■■■□□ 2.99
HMGB1-205ENST00000399494 C11orf97A0A1B0GVM6 126 aaPredicted RBP33.71■■■□□ 2.99
HMGB1-205ENST00000399494 TRIM6-TRIM34B2RNG4 842 aa33.71■■■□□ 2.99
HMGB1-205ENST00000399494 CTDSPL2Q05D32 466 aa33.71■■■□□ 2.99
HMGB1-205ENST00000399494 IKQ13123 557 aaPredicted RBP33.71■■■□□ 2.99
HMGB1-205ENST00000399494 PPP4R3BQ5MIZ7 849 aa33.71■■■□□ 2.99
HMGB1-205ENST00000399494 CCDC129Q6ZRS4 1044 aa33.71■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms