RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 PEX26Q7Z412 305 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 SUDS3Q9H7L9 328 aaPredicted RBP10.26□□□□□ -0.77
COL28A1-201ENST00000399429 MAST3O60307 1309 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 ACTN4O43707 911 aaKnown RBP10.26□□□□□ -0.77
COL28A1-201ENST00000399429 ANP32DO95626 131 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 MMEP08473 750 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 STX2P32856 288 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 CARSP49589 748 aaKnown RBP10.26□□□□□ -0.77
COL28A1-201ENST00000399429 KLHL30Q0D2K2 578 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 PREPLQ4J6C6 727 aaPredicted RBP10.26□□□□□ -0.77
COL28A1-201ENST00000399429 NBPF6Q5VWK0 638 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 MCUR1Q96AQ8 359 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 MRRFQ96E11 262 aaKnown RBP10.26□□□□□ -0.77
COL28A1-201ENST00000399429 NBPF4Q96M43 638 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 AP1M1Q9BXS5 423 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 ADD3Q9UEY8 706 aaKnown RBP10.26□□□□□ -0.77
COL28A1-201ENST00000399429 EDC4Q6P2E9 1401 aaKnown RBP10.26□□□□□ -0.77
COL28A1-201ENST00000399429 ANO9A1A5B4 782 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 PTGDRQ13258 359 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 AMOTQ4VCS5 1084 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 CCDC84Q86UT8 332 aaPredicted RBP10.26□□□□□ -0.77
COL28A1-201ENST00000399429 RAB3IPQ96QF0 476 aaPredicted RBP10.26□□□□□ -0.77
COL28A1-201ENST00000399429 EHD2Q9NZN4 543 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 KCNG1Q9UIX4 513 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 GDAQ9Y2T3 454 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 L3MBTL1Q9Y468 752 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 PCDHA13Q9Y5I0 950 aa10.26□□□□□ -0.77
COL28A1-201ENST00000399429 TRIM49BA6NDI0 452 aa10.25□□□□□ -0.77
COL28A1-201ENST00000399429 CHRM1P11229 460 aaPredicted RBP10.25□□□□□ -0.77
COL28A1-201ENST00000399429 FDPSP14324 419 aaKnown RBP10.25□□□□□ -0.77
COL28A1-201ENST00000399429 PPP2R2AP63151 447 aa10.25□□□□□ -0.77
COL28A1-201ENST00000399429 CALCOCO2Q13137 446 aa10.25□□□□□ -0.77
COL28A1-201ENST00000399429 RNF168Q8IYW5 571 aaPredicted RBP10.25□□□□□ -0.77
COL28A1-201ENST00000399429 MB21D1Q8N884 522 aa10.25□□□□□ -0.77
COL28A1-201ENST00000399429 MIGA1Q8NAN2 632 aa10.25□□□□□ -0.77
COL28A1-201ENST00000399429 MIPOL1Q8TD10 442 aa10.25□□□□□ -0.77
COL28A1-201ENST00000399429 LRRC59Q96AG4 307 aaKnown RBP10.25□□□□□ -0.77
COL28A1-201ENST00000399429 STAMBPL1Q96FJ0 436 aa10.25□□□□□ -0.77
COL28A1-201ENST00000399429 HOMER3Q9NSC5 361 aa10.25□□□□□ -0.77
COL28A1-201ENST00000399429 FBXO3Q9UK99 471 aa10.25□□□□□ -0.77
COL28A1-201ENST00000399429 ZAP70P43403 619 aa10.25□□□□□ -0.77
COL28A1-201ENST00000399429 ERVK-24P63145 666 aa10.25□□□□□ -0.77
COL28A1-201ENST00000399429 TSGA10IPQ3SY00 556 aa10.25□□□□□ -0.77
COL28A1-201ENST00000399429 ESCO1Q5FWF5 840 aa10.25□□□□□ -0.77
COL28A1-201ENST00000399429 ESR2Q92731 530 aa10.25□□□□□ -0.77
COL28A1-201ENST00000399429 HOOK2Q96ED9 719 aa10.25□□□□□ -0.77
COL28A1-201ENST00000399429 MS4A14Q96JA4 679 aa10.25□□□□□ -0.77
COL28A1-201ENST00000399429 PLCB1Q9NQ66 1216 aa10.25□□□□□ -0.77
COL28A1-201ENST00000399429 SCOCQ9UIL1 159 aa10.25□□□□□ -0.77
COL28A1-201ENST00000399429 SNUPNO95149 360 aaKnown RBP10.25□□□□□ -0.77
COL28A1-201ENST00000399429 TATP17735 454 aaPredicted RBP10.25□□□□□ -0.77
COL28A1-201ENST00000399429 KIF11P52732 1056 aa10.25□□□□□ -0.77
COL28A1-201ENST00000399429 ZBED6P86452 979 aa10.25□□□□□ -0.77
COL28A1-201ENST00000399429 ZMYM1Q5SVZ6 1142 aa10.25□□□□□ -0.77
COL28A1-201ENST00000399429 DDX23Q9BUQ8 820 aaKnown RBP10.25□□□□□ -0.77
COL28A1-201ENST00000399429 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.25□□□□□ -0.77
COL28A1-201ENST00000399429 hCG_2014768A0A024R1R8 64 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 CCDC169A6NNP5 214 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 TRIM37O94972 964 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 PTPREP23469 700 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 SFMBT2Q5VUG0 894 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 LONP2Q86WA8 852 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 EGFL6Q8IUX8 553 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 ABTB1Q969K4 478 aaPredicted RBP10.24□□□□□ -0.77
COL28A1-201ENST00000399429 CNOT6LQ96LI5 555 aaKnown RBP10.24□□□□□ -0.77
COL28A1-201ENST00000399429 CCDC77Q9BR77 488 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 TEX13AQ9BXU3 409 aaPredicted RBP10.24□□□□□ -0.77
COL28A1-201ENST00000399429 VAT1LQ9HCJ6 419 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 SNX12Q9UMY4 172 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 PNPLA6Q8IY17 1366 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 M0R2C6 588 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 GTPBP6O43824 516 aaPredicted RBP10.24□□□□□ -0.77
COL28A1-201ENST00000399429 FSBPO95073 299 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 SCTRP47872 440 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 AARSP49588 968 aaKnown RBP eCLIP10.24□□□□□ -0.77
COL28A1-201ENST00000399429 KIF6Q6ZMV9 814 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 USP49Q70CQ1 688 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 TRAPPC11Q7Z392 1133 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 VPS52Q8N1B4 723 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 HDAC7Q8WUI4 952 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 OSBP2Q969R2 916 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 CHMP6Q96FZ7 201 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 IQSEC3Q9UPP2 1182 aaPredicted RBP10.24□□□□□ -0.77
COL28A1-201ENST00000399429 DUSP10Q9Y6W6 482 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 KDRP35968 1356 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 GSCP56915 257 aaPredicted RBP10.24□□□□□ -0.77
COL28A1-201ENST00000399429 SLC8A3P57103 927 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 NUGGCQ68CJ6 796 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 DYMQ7RTS9 669 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 FUKQ8N0W3 1084 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 KIF2BQ8N4N8 673 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 PROCA1Q8NCQ7 364 aaPredicted RBP10.24□□□□□ -0.77
COL28A1-201ENST00000399429 DDX27Q96GQ7 796 aaKnown RBP10.24□□□□□ -0.77
COL28A1-201ENST00000399429 LBHD1Q9BQE6 289 aaPredicted RBP10.24□□□□□ -0.77
COL28A1-201ENST00000399429 PACSIN2Q9UNF0 486 aaPredicted RBP10.24□□□□□ -0.77
COL28A1-201ENST00000399429 SRPRBQ9Y5M8 271 aaKnown RBP10.24□□□□□ -0.77
COL28A1-201ENST00000399429 RASSF10A6NK89 507 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 TRAF1Q13077 416 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 MLXIPLQ9NP71 852 aa10.24□□□□□ -0.77
COL28A1-201ENST00000399429 RWDD2AQ9UIY3 292 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms