RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 FAM83AQ86UY5 434 aa9.29□□□□□ -0.92
PTPRD-204ENST00000397606 IL25Q9H293 177 aa9.29□□□□□ -0.92
PTPRD-204ENST00000397606 RGPD2P0DJD1 1756 aa9.29□□□□□ -0.92
PTPRD-204ENST00000397606 TCRBV5S4A2TA0A5A2 114 aa9.29□□□□□ -0.92
PTPRD-204ENST00000397606 CMA1P23946 247 aa9.29□□□□□ -0.92
PTPRD-204ENST00000397606 TECP42680 631 aa9.29□□□□□ -0.92
PTPRD-204ENST00000397606 MKRN3Q13064 507 aaKnown RBP9.29□□□□□ -0.92
PTPRD-204ENST00000397606 OTUD6AQ7L8S5 288 aa9.29□□□□□ -0.92
PTPRD-204ENST00000397606 VPS36Q86VN1 386 aa9.29□□□□□ -0.92
PTPRD-204ENST00000397606 IFT74Q96LB3 600 aa9.29□□□□□ -0.92
PTPRD-204ENST00000397606 EHD4Q9H223 541 aa9.29□□□□□ -0.92
PTPRD-204ENST00000397606 PPP2R3BQ9Y5P8 575 aa9.29□□□□□ -0.92
PTPRD-204ENST00000397606 RPL13P26373 211 aaKnown RBP9.29□□□□□ -0.92
PTPRD-204ENST00000397606 NFIAQ12857 509 aa9.29□□□□□ -0.92
PTPRD-204ENST00000397606 NR5A1Q13285 461 aa9.29□□□□□ -0.92
PTPRD-204ENST00000397606 ZFYVE27Q5T4F4 411 aa9.29□□□□□ -0.92
PTPRD-204ENST00000397606 FAM177A1Q8N128 213 aaPredicted RBP9.29□□□□□ -0.92
PTPRD-204ENST00000397606 RASGRP4Q8TDF6 673 aa9.29□□□□□ -0.92
PTPRD-204ENST00000397606 UPF1Q92900 1129 aaKnown RBP eCLIP9.29□□□□□ -0.92
PTPRD-204ENST00000397606 GLG1Q92896 1179 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 USP17L15C9J2P7 530 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 USP17L13C9JLJ4 530 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 USP17L11C9JVI0 530 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 USP17L18D6R9N7 530 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 USP17L22D6RA61 530 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 USP17L17D6RBQ6 530 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 USP17L19D6RCP7 530 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 USP17L20D6RJB6 530 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 PPP6R2O75170 966 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 EPHX2P34913 555 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 USP17L24Q0WX57 530 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 ZNF280CQ8ND82 737 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 AIFM3Q96NN9 605 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 SPZ1Q9BXG8 430 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 LMBRD1Q9NUN5 540 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 SEPT11Q9NVA2 429 aaKnown RBP9.28□□□□□ -0.92
PTPRD-204ENST00000397606 ABCB11O95342 1321 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 WDR46O15213 610 aaKnown RBP9.28□□□□□ -0.92
PTPRD-204ENST00000397606 CDC27P30260 824 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 TPH2Q8IWU9 490 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 AK8Q96MA6 479 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 WDR11Q9BZH6 1224 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 VIL1P09327 827 aaKnown RBP9.28□□□□□ -0.92
PTPRD-204ENST00000397606 ZNF543Q08ER8 600 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 APBB1IPQ7Z5R6 666 aaPredicted RBP9.28□□□□□ -0.92
PTPRD-204ENST00000397606 ADGRA1Q86SQ6 560 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 ANKRD13AQ8IZ07 590 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 AOPEPQ8N6M6 819 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 MAP3K14Q99558 947 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 GPBP1L1Q9HC44 474 aaPredicted RBP9.28□□□□□ -0.92
PTPRD-204ENST00000397606 NOD1Q9Y239 953 aa9.28□□□□□ -0.92
PTPRD-204ENST00000397606 A0A1W2PQ27 194 aa9.27□□□□□ -0.92
PTPRD-204ENST00000397606 A0A1W2PQ64 194 aa9.27□□□□□ -0.92
PTPRD-204ENST00000397606 A0A1W2PQD8 194 aa9.27□□□□□ -0.92
PTPRD-204ENST00000397606 COPB2P35606 906 aa9.27□□□□□ -0.92
PTPRD-204ENST00000397606 HMGCS2P54868 508 aa9.27□□□□□ -0.92
PTPRD-204ENST00000397606 POSTNQ15063 836 aa9.27□□□□□ -0.92
PTPRD-204ENST00000397606 RNF207Q6ZRF8 634 aa9.27□□□□□ -0.92
PTPRD-204ENST00000397606 NUP88Q99567 741 aaPredicted RBP9.27□□□□□ -0.92
PTPRD-204ENST00000397606 VCPKMTQ9H867 229 aa9.27□□□□□ -0.92
PTPRD-204ENST00000397606 PCDHA7Q9UN72 937 aa9.27□□□□□ -0.92
PTPRD-204ENST00000397606 CLIC4Q9Y696 253 aa9.27□□□□□ -0.92
PTPRD-204ENST00000397606 DDNO94850 711 aaPredicted RBP9.27□□□□□ -0.93
PTPRD-204ENST00000397606 NDUFB10O96000 172 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 PFKFB1P16118 471 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 DNM2P50570 870 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 GSDMDP57764 484 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 LRCH2Q5VUJ6 765 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 FKBP1CQ5VVH2 108 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 ADGRF4Q8IZF3 695 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 UIMC1Q96RL1 719 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 KIF2CQ99661 725 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 ANO3Q9BYT9 981 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 ELP3Q9H9T3 547 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 BARHL2Q9NY43 387 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 VEGFAP15692 232 aaPredicted RBP9.27□□□□□ -0.93
PTPRD-204ENST00000397606 CCND2P30279 289 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 UBASH3AP57075 661 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 PDE4CQ08493 712 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 MTMR2Q13614 643 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 QRICH1Q2TAL8 776 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 SPDYE2Q495Y8 402 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 HERC4Q5GLZ8 1057 aaPredicted RBP9.27□□□□□ -0.93
PTPRD-204ENST00000397606 MLKLQ8NB16 471 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 KCNB2Q92953 911 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 ZNF577Q9BSK1 485 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 CPVLQ9H3G5 476 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 GADD45BO75293 160 aaPredicted RBP9.27□□□□□ -0.93
PTPRD-204ENST00000397606 ANTXR2P58335 489 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 NBPF9Q3BBW0 867 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 SNRNP48Q6IEG0 339 aaKnown RBP9.27□□□□□ -0.93
PTPRD-204ENST00000397606 IDI2Q9BXS1 227 aa9.27□□□□□ -0.93
PTPRD-204ENST00000397606 CCDC169A6NNP5 214 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 DESP17661 470 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 RESTQ13127 1097 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 RPAP3Q9H6T3 665 aaPredicted RBP9.26□□□□□ -0.93
PTPRD-204ENST00000397606 EXOC7Q9UPT5 735 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 MRVI1Q9Y6F6 885 aa9.26□□□□□ -0.93
PTPRD-204ENST00000397606 WTIPA6NIX2 430 aaPredicted RBP9.26□□□□□ -0.93
PTPRD-204ENST00000397606 MYL5Q02045 173 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms