RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 SIRT2Q8IXJ6 389 aa10.52□□□□□ -0.73
CAPN3-208ENST00000397204 MSL3Q8N5Y2 521 aaKnown RBP10.52□□□□□ -0.73
CAPN3-208ENST00000397204 TRIM43Q96BQ3 446 aaPredicted RBP10.52□□□□□ -0.73
CAPN3-208ENST00000397204 KCTD12Q96CX2 325 aaKnown RBP10.52□□□□□ -0.73
CAPN3-208ENST00000397204 FAM161BQ96MY7 647 aa10.52□□□□□ -0.73
CAPN3-208ENST00000397204 MMP19Q99542 508 aa10.52□□□□□ -0.73
CAPN3-208ENST00000397204 HAUS7Q99871 368 aa10.52□□□□□ -0.73
CAPN3-208ENST00000397204 TSEN34Q9BSV6 310 aaKnown RBP10.52□□□□□ -0.73
CAPN3-208ENST00000397204 COL25A1Q9BXS0 654 aaPredicted RBP10.52□□□□□ -0.73
CAPN3-208ENST00000397204 BOLA2Q9H3K6 86 aa10.52□□□□□ -0.73
CAPN3-208ENST00000397204 CHMP4BQ9H444 224 aaKnown RBP10.52□□□□□ -0.73
CAPN3-208ENST00000397204 GOPCQ9HD26 462 aa10.52□□□□□ -0.73
CAPN3-208ENST00000397204 XPNPEP3Q9NQH7 507 aa10.52□□□□□ -0.73
CAPN3-208ENST00000397204 PRDM5Q9NQX1 630 aaPredicted RBP10.52□□□□□ -0.73
CAPN3-208ENST00000397204 PDLIM7Q9NR12 457 aa10.52□□□□□ -0.73
CAPN3-208ENST00000397204 ZBTB40Q9NUA8 1239 aa10.52□□□□□ -0.73
CAPN3-208ENST00000397204 DDX19BQ9UMR2 479 aa10.52□□□□□ -0.73
CAPN3-208ENST00000397204 FAM47AQ5JRC9 791 aa10.51□□□□□ -0.73
CAPN3-208ENST00000397204 CTR9Q6PD62 1173 aa10.51□□□□□ -0.73
CAPN3-208ENST00000397204 SH3RF1Q7Z6J0 888 aa10.51□□□□□ -0.73
CAPN3-208ENST00000397204 CLEC10AQ8IUN9 316 aa10.51□□□□□ -0.73
CAPN3-208ENST00000397204 TOX2Q96NM4 488 aa10.51□□□□□ -0.73
CAPN3-208ENST00000397204 CDX2Q99626 313 aaPredicted RBP10.51□□□□□ -0.73
CAPN3-208ENST00000397204 PPP1R9AQ9ULJ8 1098 aa10.51□□□□□ -0.73
CAPN3-208ENST00000397204 SLC4A4Q9Y6R1 1079 aa10.51□□□□□ -0.73
CAPN3-208ENST00000397204 CDH23Q9H251 3354 aa10.51□□□□□ -0.73
CAPN3-208ENST00000397204 CYP2D7A0A087X1C5 515 aa10.5□□□□□ -0.73
CAPN3-208ENST00000397204 KIAA0355O15063 1070 aa10.5□□□□□ -0.73
CAPN3-208ENST00000397204 PGK1P00558 417 aa10.5□□□□□ -0.73
CAPN3-208ENST00000397204 PGK2P07205 417 aa10.5□□□□□ -0.73
CAPN3-208ENST00000397204 ZNF865P0CJ78 1059 aaPredicted RBP10.5□□□□□ -0.73
CAPN3-208ENST00000397204 PRSS12P56730 875 aa10.5□□□□□ -0.73
CAPN3-208ENST00000397204 FBXO28Q9NVF7 368 aa10.5□□□□□ -0.73
CAPN3-208ENST00000397204 ZNF214Q9UL59 606 aaPredicted RBP10.5□□□□□ -0.73
CAPN3-208ENST00000397204 CNPY2Q9Y2B0 182 aa10.5□□□□□ -0.73
CAPN3-208ENST00000397204 TMEM265A0A087WTH1 108 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 GOLGA8CPA6NN73 597 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 DCDC2CA8MYV0 355 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 SMIM22K7EJ46 135 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 CLTBP09497 229 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 AKR1A1P14550 325 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 RAG1P15918 1043 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 TAL1P17542 331 aaPredicted RBP10.49□□□□□ -0.73
CAPN3-208ENST00000397204 SLFNL1Q499Z3 407 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 SBK1Q52WX2 424 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 FAM83BQ5T0W9 1011 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 GIMAP6Q6P9H5 292 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 MAMDC4Q6UXC1 1216 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 ANKRD33Q7Z3H0 272 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 PRPF38AQ8NAV1 312 aaKnown RBP10.49□□□□□ -0.73
CAPN3-208ENST00000397204 REPS2Q8NFH8 660 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 MAFAQ8NHW3 353 aaPredicted RBP10.49□□□□□ -0.73
CAPN3-208ENST00000397204 NUP133Q8WUM0 1156 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 DDX11Q96FC9 970 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 SLF1Q9BQI6 1058 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.49□□□□□ -0.73
CAPN3-208ENST00000397204 TEX13BQ9BXU2 312 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 BCL11AQ9H165 835 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 MKNK2Q9HBH9 465 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 NPDC1Q9NQX5 325 aaPredicted RBP10.49□□□□□ -0.73
CAPN3-208ENST00000397204 TMEM39AQ9NV64 488 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 NYAP2Q9P242 653 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 SEPT9Q9UHD8 586 aaPredicted RBP10.49□□□□□ -0.73
CAPN3-208ENST00000397204 FAM184BQ9ULE4 1060 aa10.49□□□□□ -0.73
CAPN3-208ENST00000397204 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.48□□□□□ -0.73
CAPN3-208ENST00000397204 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.48□□□□□ -0.73
CAPN3-208ENST00000397204 A0A1W2PQ45 241 aaPredicted RBP10.48□□□□□ -0.73
CAPN3-208ENST00000397204 A0A1W2PQY0 241 aa10.48□□□□□ -0.73
CAPN3-208ENST00000397204 MOXD2PA6NHM9 499 aa10.48□□□□□ -0.73
CAPN3-208ENST00000397204 F5H6K3 240 aa10.48□□□□□ -0.73
CAPN3-208ENST00000397204 ATP2A1O14983 1001 aa10.48□□□□□ -0.73
CAPN3-208ENST00000397204 RAD21O60216 631 aa10.48□□□□□ -0.73
CAPN3-208ENST00000397204 ZBED4O75132 1171 aa10.48□□□□□ -0.73
CAPN3-208ENST00000397204 ADAMTS4O75173 837 aa10.48□□□□□ -0.73
CAPN3-208ENST00000397204 ITGB8P26012 769 aa10.48□□□□□ -0.73
CAPN3-208ENST00000397204 ACLYP53396 1101 aa10.48□□□□□ -0.73
CAPN3-208ENST00000397204 KLRC3Q07444 240 aa10.48□□□□□ -0.73
CAPN3-208ENST00000397204 KLHDC9Q8NEP7 349 aa10.48□□□□□ -0.73
CAPN3-208ENST00000397204 STRBPQ96SI9 672 aaKnown RBP10.48□□□□□ -0.73
CAPN3-208ENST00000397204 PUS7LQ9H0K6 701 aaKnown RBP10.48□□□□□ -0.73
CAPN3-208ENST00000397204 TTYH1Q9H313 450 aaPredicted RBP10.48□□□□□ -0.73
CAPN3-208ENST00000397204 ARPP21Q9UBL0 812 aaPredicted RBP10.48□□□□□ -0.73
CAPN3-208ENST00000397204 ZNF236Q9UL36 1845 aa10.48□□□□□ -0.73
CAPN3-208ENST00000397204 ZBED9Q6R2W3 1325 aa10.48□□□□□ -0.73
CAPN3-208ENST00000397204 SYNGAP1Q96PV0 1343 aa10.48□□□□□ -0.73
CAPN3-208ENST00000397204 SMCHD1A6NHR9 2005 aa10.48□□□□□ -0.73
CAPN3-208ENST00000397204 RLFQ13129 1914 aa10.47□□□□□ -0.73
CAPN3-208ENST00000397204 DNAJC25-GNG10A0A024R161 153 aa10.47□□□□□ -0.73
CAPN3-208ENST00000397204 PQBP1O60828 265 aaKnown RBP10.47□□□□□ -0.73
CAPN3-208ENST00000397204 DUSP11O75319 330 aaKnown RBP10.47□□□□□ -0.73
CAPN3-208ENST00000397204 SNAI1O95863 264 aaPredicted RBP10.47□□□□□ -0.73
CAPN3-208ENST00000397204 RASA1P20936 1047 aa10.47□□□□□ -0.73
CAPN3-208ENST00000397204 FPGSQ05932 587 aa10.47□□□□□ -0.73
CAPN3-208ENST00000397204 FAAP100Q0VG06 881 aa10.47□□□□□ -0.73
CAPN3-208ENST00000397204 KCNA10Q16322 511 aa10.47□□□□□ -0.73
CAPN3-208ENST00000397204 SNRNP48Q6IEG0 339 aaKnown RBP10.47□□□□□ -0.73
CAPN3-208ENST00000397204 CCSAPQ6IQ19 270 aaPredicted RBP10.47□□□□□ -0.73
CAPN3-208ENST00000397204 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.47□□□□□ -0.73
CAPN3-208ENST00000397204 PCSK9Q8NBP7 692 aaKnown RBP10.47□□□□□ -0.73
CAPN3-208ENST00000397204 MYLIPQ8WY64 445 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms