RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 ARHGAP6O43182 974 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 FOSP01100 380 aaPredicted RBP7.88□□□□□ -1.15
UPF2-203ENST00000397053 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.88□□□□□ -1.15
UPF2-203ENST00000397053 FAM196AQ6ZSG2 479 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 TSPYL6Q8N831 410 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 C7orf31Q8N865 590 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 RNF139Q8WU17 664 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 LRRC4Q9HBW1 653 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 ABCF3Q9NUQ8 709 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 HECW1Q76N89 1606 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 KLRF2D3W0D1 207 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 PPP1R12AO14974 1030 aaPredicted RBP7.88□□□□□ -1.15
UPF2-203ENST00000397053 VAMP4O75379 141 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 TRIM37O94972 964 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 SRGAP2BP0DMP2 458 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 RPS6KB1P23443 525 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 PDE6CP51160 858 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 EVCP57679 992 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 PAK2Q13177 524 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 LONRF2Q1L5Z9 754 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 CFAP221Q4G0U5 840 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 RNF219Q5W0B1 726 aaPredicted RBP7.88□□□□□ -1.15
UPF2-203ENST00000397053 RINT1Q6NUQ1 792 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 SLFN12Q8IYM2 578 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 ZNF496Q96IT1 587 aaPredicted RBP7.88□□□□□ -1.15
UPF2-203ENST00000397053 CCDC17Q96LX7 622 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 IFT122Q9HBG6 1241 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 SMYD2Q9NRG4 433 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 OLA1Q9NTK5 396 aaKnown RBP7.88□□□□□ -1.15
UPF2-203ENST00000397053 PCDHB15Q9Y5E8 787 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 FRMPD2Q68DX3 1309 aaPredicted RBP7.88□□□□□ -1.15
UPF2-203ENST00000397053 ARHGEF10O15013 1369 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 ZNF233A6NK53 670 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 RNF40O75150 1001 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 ZNF853P0CG23 659 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 ANXA13P27216 316 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 NSFP46459 744 aaKnown RBP7.88□□□□□ -1.15
UPF2-203ENST00000397053 PDE1BQ01064 536 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 BFSP1Q12934 665 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 GCKRQ14397 625 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 TBCCQ15814 346 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 TSNAXIP1Q2TAA8 658 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 CC2D2BQ6DHV5 1058 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 PNMA1Q8ND90 353 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 LLPHQ9BRT6 129 aaKnown RBP7.88□□□□□ -1.15
UPF2-203ENST00000397053 SFMBT1Q9UHJ3 866 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 KDRP35968 1356 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 PLB1Q6P1J6 1458 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 ARHGAP42A6NI28 874 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 NEMP1O14524 444 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 HOXB7P09629 217 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 STX2P32856 288 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 ADCY8P40145 1251 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 GYG1P46976 350 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 CYP4A11Q02928 519 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 RAB44Q7Z6P3 723 aaPredicted RBP7.88□□□□□ -1.15
UPF2-203ENST00000397053 PNMA8AQ86V59 439 aaPredicted RBP7.88□□□□□ -1.15
UPF2-203ENST00000397053 SPICE1Q8N0Z3 855 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 TAB3Q8N5C8 712 aaPredicted RBP7.88□□□□□ -1.15
UPF2-203ENST00000397053 C2orf69Q8N8R5 385 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 CABS1Q96KC9 395 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 RAB17Q9H0T7 212 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 EFCC1Q9HA90 598 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 SEPT9Q9UHD8 586 aaPredicted RBP7.88□□□□□ -1.15
UPF2-203ENST00000397053 TSKSQ9UJT2 592 aa7.88□□□□□ -1.15
UPF2-203ENST00000397053 GARSP41250 739 aaKnown RBP7.87□□□□□ -1.15
UPF2-203ENST00000397053 CASP2P42575 452 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 BTDP43251 543 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 IL1RL1Q01638 556 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 PPARAQ07869 468 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 POSTNQ15063 836 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 EEPD1Q7L9B9 569 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 CCNYQ8ND76 341 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 INTS4Q96HW7 963 aaKnown RBP7.87□□□□□ -1.15
UPF2-203ENST00000397053 AMNQ9BXJ7 453 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 ZNF215Q9UL58 517 aaPredicted RBP7.87□□□□□ -1.15
UPF2-203ENST00000397053 ZNF148Q9UQR1 794 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 WDR17Q8IZU2 1322 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 FBXW4P57775 412 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 PPARDQ03181 441 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 PTK2Q05397 1052 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 ASPHQ12797 758 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 DENND2CQ68D51 928 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 TTBK2Q6IQ55 1244 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 CAPN12Q6ZSI9 719 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 B4GALNT4Q76KP1 1039 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 ZNF654Q8IZM8 581 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 NDUFAF2Q8N183 169 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 ANKRD42Q8N9B4 389 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.87□□□□□ -1.15
UPF2-203ENST00000397053 NELFBQ8WX92 580 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 MTRQ99707 1265 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 PIDD1Q9HB75 910 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 NPATQ14207 1427 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 PPFIA4O75335 1185 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 BPIFB4P59827 614 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 ODR4Q5SWX8 454 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 CDHR1Q96JP9 859 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 PKNOX2Q96KN3 472 aa7.87□□□□□ -1.15
UPF2-203ENST00000397053 IFIH1Q9BYX4 1025 aaKnown RBP7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms