RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 ABCB6Q9NP58 842 aa23.17■■□□□ 1.3
CLK3-202ENST00000395066 MAD2L2Q9UI95 211 aa23.17■■□□□ 1.3
CLK3-202ENST00000395066 ERLIN1O75477 346 aa23.17■■□□□ 1.3
CLK3-202ENST00000395066 SPAG1Q07617 926 aa23.17■■□□□ 1.3
CLK3-202ENST00000395066 RMND1Q9NWS8 449 aa23.17■■□□□ 1.3
CLK3-202ENST00000395066 SAP30BPQ9UHR5 308 aaKnown RBP23.17■■□□□ 1.3
CLK3-202ENST00000395066 STX8Q9UNK0 236 aa23.17■■□□□ 1.3
CLK3-202ENST00000395066 RREB1Q92766 1687 aa23.17■■□□□ 1.3
CLK3-202ENST00000395066 VGLL3A8MV65 326 aa23.16■■□□□ 1.3
CLK3-202ENST00000395066 VSNL1P62760 191 aa23.16■■□□□ 1.3
CLK3-202ENST00000395066 ARL6IP4Q66PJ3 421 aaKnown RBP23.16■■□□□ 1.3
CLK3-202ENST00000395066 TRIM47Q96LD4 638 aa23.16■■□□□ 1.3
CLK3-202ENST00000395066 KIAA1551Q9HCM1 1747 aa23.16■■□□□ 1.3
CLK3-202ENST00000395066 LAMB1P07942 1786 aa23.16■■□□□ 1.3
CLK3-202ENST00000395066 KLRC4O43908 158 aa23.16■■□□□ 1.3
CLK3-202ENST00000395066 N4BP1O75113 896 aaKnown RBP23.16■■□□□ 1.3
CLK3-202ENST00000395066 NDUFA10O95299 355 aa23.16■■□□□ 1.3
CLK3-202ENST00000395066 CALML3P27482 149 aa23.16■■□□□ 1.3
CLK3-202ENST00000395066 TUBB4BP68371 445 aa23.16■■□□□ 1.3
CLK3-202ENST00000395066 MB21D1Q8N884 522 aa23.16■■□□□ 1.3
CLK3-202ENST00000395066 MKNK2Q9HBH9 465 aa23.16■■□□□ 1.3
CLK3-202ENST00000395066 VPS18Q9P253 973 aa23.16■■□□□ 1.3
CLK3-202ENST00000395066 EPN1Q9Y6I3 576 aaPredicted RBP23.16■■□□□ 1.3
CLK3-202ENST00000395066 B4DLN1 442 aa23.15■■□□□ 1.3
CLK3-202ENST00000395066 UBA7P41226 1012 aa23.15■■□□□ 1.3
CLK3-202ENST00000395066 SBK1Q52WX2 424 aa23.15■■□□□ 1.3
CLK3-202ENST00000395066 NBPF5PQ86XG9 351 aaPredicted RBP23.15■■□□□ 1.3
CLK3-202ENST00000395066 GPIHBP1Q8IV16 184 aa23.15■■□□□ 1.3
CLK3-202ENST00000395066 HPS3Q969F9 1004 aa23.15■■□□□ 1.3
CLK3-202ENST00000395066 NLRP3Q96P20 1036 aa23.15■■□□□ 1.3
CLK3-202ENST00000395066 L1RE1Q9UN81 338 aa23.15■■□□□ 1.3
CLK3-202ENST00000395066 M0R2N6 131 aa23.14■■□□□ 1.3
CLK3-202ENST00000395066 EIF3JO75822 258 aaKnown RBP23.14■■□□□ 1.3
CLK3-202ENST00000395066 C12orf60Q5U649 245 aa23.14■■□□□ 1.3
CLK3-202ENST00000395066 AGPAT5Q9NUQ2 364 aa23.14■■□□□ 1.3
CLK3-202ENST00000395066 SRGAP2O75044 1071 aa23.14■■□□□ 1.29
CLK3-202ENST00000395066 ACTN2P35609 894 aa23.14■■□□□ 1.29
CLK3-202ENST00000395066 WDR59Q6PJI9 974 aa23.14■■□□□ 1.29
CLK3-202ENST00000395066 MSL3Q8N5Y2 521 aaKnown RBP23.14■■□□□ 1.29
CLK3-202ENST00000395066 COL22A1Q8NFW1 1626 aaPredicted RBP23.14■■□□□ 1.29
CLK3-202ENST00000395066 H7C1D1 291 aa23.13■■□□□ 1.29
CLK3-202ENST00000395066 TGFBRAP1Q8WUH2 860 aa23.13■■□□□ 1.29
CLK3-202ENST00000395066 CTAGE15A4D2H0 777 aa23.13■■□□□ 1.29
CLK3-202ENST00000395066 CTAGE8P0CG41 777 aa23.13■■□□□ 1.29
CLK3-202ENST00000395066 TSPY3P0CV98 308 aa23.13■■□□□ 1.29
CLK3-202ENST00000395066 TSPY8P0CW00 308 aa23.13■■□□□ 1.29
CLK3-202ENST00000395066 CTAGE6Q86UF2 777 aa23.13■■□□□ 1.29
CLK3-202ENST00000395066 AMIGO3Q86WK7 504 aa23.13■■□□□ 1.29
CLK3-202ENST00000395066 CTAGE4Q8IX94 777 aa23.13■■□□□ 1.29
CLK3-202ENST00000395066 MYO6Q9UM54 1294 aa23.13■■□□□ 1.29
CLK3-202ENST00000395066 LGALS16A8MUM7 142 aa23.12■■□□□ 1.29
CLK3-202ENST00000395066 HERVK_113P62684 666 aa23.12■■□□□ 1.29
CLK3-202ENST00000395066 AMPD2Q01433 879 aa23.12■■□□□ 1.29
CLK3-202ENST00000395066 PYM1Q9BRP8 204 aaKnown RBP23.12■■□□□ 1.29
CLK3-202ENST00000395066 TRIM34Q9BYJ4 488 aa23.12■■□□□ 1.29
CLK3-202ENST00000395066 LUC7L2Q9Y383 392 aaKnown RBP23.12■■□□□ 1.29
CLK3-202ENST00000395066 PLCG1P19174 1290 aa23.12■■□□□ 1.29
CLK3-202ENST00000395066 GRM4Q14833 912 aa23.12■■□□□ 1.29
CLK3-202ENST00000395066 CCDC178Q5BJE1 867 aa23.12■■□□□ 1.29
CLK3-202ENST00000395066 MAPKAPK5Q8IW41 473 aa23.12■■□□□ 1.29
CLK3-202ENST00000395066 OR8K1Q8NGG5 319 aa23.12■■□□□ 1.29
CLK3-202ENST00000395066 ZNF507Q8TCN5 953 aa23.12■■□□□ 1.29
CLK3-202ENST00000395066 CDCA7Q9BWT1 371 aaPredicted RBP23.12■■□□□ 1.29
CLK3-202ENST00000395066 MKRN1Q9UHC7 482 aaKnown RBP23.12■■□□□ 1.29
CLK3-202ENST00000395066 STXBP3O00186 592 aa23.12■■□□□ 1.29
CLK3-202ENST00000395066 FCER1AP12319 257 aa23.12■■□□□ 1.29
CLK3-202ENST00000395066 TRIM14Q14142 442 aa23.12■■□□□ 1.29
CLK3-202ENST00000395066 SETDB2Q96T68 719 aa23.12■■□□□ 1.29
CLK3-202ENST00000395066 ATP1A1P05023 1023 aaKnown RBP23.11■■□□□ 1.29
CLK3-202ENST00000395066 TXNRD1Q16881 649 aa23.11■■□□□ 1.29
CLK3-202ENST00000395066 LETM2Q2VYF4 491 aa23.11■■□□□ 1.29
CLK3-202ENST00000395066 CAPZA3Q96KX2 299 aa23.11■■□□□ 1.29
CLK3-202ENST00000395066 TMEM47Q9BQJ4 181 aa23.11■■□□□ 1.29
CLK3-202ENST00000395066 LCMT1Q9UIC8 334 aa23.11■■□□□ 1.29
CLK3-202ENST00000395066 RCCD1A6NED2 376 aa23.11■■□□□ 1.29
CLK3-202ENST00000395066 WHAMMP3Q1A5X7 153 aa23.11■■□□□ 1.29
CLK3-202ENST00000395066 SLC10A5Q5PT55 438 aa23.11■■□□□ 1.29
CLK3-202ENST00000395066 TTI2Q6NXR4 508 aa23.11■■□□□ 1.29
CLK3-202ENST00000395066 LEKR1Q6ZMV7 388 aa23.11■■□□□ 1.29
CLK3-202ENST00000395066 DGKHQ86XP1 1220 aa23.11■■□□□ 1.29
CLK3-202ENST00000395066 DUSP9Q99956 384 aaKnown RBP23.11■■□□□ 1.29
CLK3-202ENST00000395066 VAT1LQ9HCJ6 419 aa23.11■■□□□ 1.29
CLK3-202ENST00000395066 MYO1CO00159 1063 aa23.1■■□□□ 1.29
CLK3-202ENST00000395066 STK4Q13043 487 aa23.1■■□□□ 1.29
CLK3-202ENST00000395066 CSGALNACT2Q8N6G5 542 aa23.1■■□□□ 1.29
CLK3-202ENST00000395066 RASSF4Q9H2L5 321 aa23.1■■□□□ 1.29
CLK3-202ENST00000395066 KBTBD4Q9NVX7 518 aa23.1■■□□□ 1.29
CLK3-202ENST00000395066 DUSP10Q9Y6W6 482 aa23.1■■□□□ 1.29
CLK3-202ENST00000395066 ROBO1Q9Y6N7 1651 aa23.1■■□□□ 1.29
CLK3-202ENST00000395066 RASSF10A6NK89 507 aa23.1■■□□□ 1.29
CLK3-202ENST00000395066 PSMA7O14818 248 aa23.1■■□□□ 1.29
CLK3-202ENST00000395066 PIP4K2BP78356 416 aa23.1■■□□□ 1.29
CLK3-202ENST00000395066 CCDC122Q5T0U0 273 aa23.1■■□□□ 1.29
CLK3-202ENST00000395066 GBP3Q9H0R5 595 aa23.1■■□□□ 1.29
CLK3-202ENST00000395066 ANKIB1Q9P2G1 1089 aa23.1■■□□□ 1.29
CLK3-202ENST00000395066 PDS5AQ29RF7 1337 aaKnown RBP23.09■■□□□ 1.29
CLK3-202ENST00000395066 CCNT1O60563 726 aaKnown RBP23.09■■□□□ 1.29
CLK3-202ENST00000395066 PHACTR2O75167 634 aa23.09■■□□□ 1.29
CLK3-202ENST00000395066 LDHBP07195 334 aaKnown RBP23.09■■□□□ 1.29
CLK3-202ENST00000395066 ERCC3P19447 782 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms