RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 MAPK4P31152 587 aa8.17□□□□□ -1.1
LIMA1-202ENST00000394943 TTLL12Q14166 644 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-202ENST00000394943 ME3Q16798 604 aa8.17□□□□□ -1.1
LIMA1-202ENST00000394943 CCDC84Q86UT8 332 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-202ENST00000394943 TRMT44Q8IYL2 757 aaKnown RBP8.17□□□□□ -1.1
LIMA1-202ENST00000394943 LRRC47Q8N1G4 583 aaKnown RBP8.17□□□□□ -1.1
LIMA1-202ENST00000394943 STAG2Q8N3U4 1231 aa8.17□□□□□ -1.1
LIMA1-202ENST00000394943 SLC15A5A6NIM6 579 aa8.17□□□□□ -1.1
LIMA1-202ENST00000394943 MPHOSPH10O00566 681 aaKnown RBP8.17□□□□□ -1.1
LIMA1-202ENST00000394943 ZNF792Q3KQV3 632 aa8.17□□□□□ -1.1
LIMA1-202ENST00000394943 GALNT17Q6IS24 598 aa8.17□□□□□ -1.1
LIMA1-202ENST00000394943 ZNF408Q9H9D4 720 aa8.17□□□□□ -1.1
LIMA1-202ENST00000394943 UPF2Q9HAU5 1272 aaKnown RBP8.17□□□□□ -1.1
LIMA1-202ENST00000394943 SLC12A7Q9Y666 1083 aa8.17□□□□□ -1.1
LIMA1-202ENST00000394943 SLC1A4P43007 532 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 DGKZQ13574 1117 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 NSUN7Q8NE18 718 aaKnown RBP8.16□□□□□ -1.1
LIMA1-202ENST00000394943 TNFRSF25Q93038 417 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 MBOAT7Q96N66 472 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 SPATC1LQ9H0A9 340 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 FBXO40Q9UH90 709 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 SMCHD1A6NHR9 2005 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 CCDC69A6NI79 296 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 FDPSP14324 419 aaKnown RBP8.16□□□□□ -1.1
LIMA1-202ENST00000394943 CAP1Q01518 475 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 KATNBL1Q9H079 304 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 ZMYND12Q9H0C1 365 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 GLT8D2Q9H1C3 349 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 BARHL2Q9NY43 387 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 KLF18A0A0U1RQI7 1052 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 KLRF2D3W0D1 207 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 CD2BP2O95400 341 aaKnown RBP8.16□□□□□ -1.1
LIMA1-202ENST00000394943 LACTBP83111 547 aaPredicted RBP8.16□□□□□ -1.1
LIMA1-202ENST00000394943 SLC4A8Q2Y0W8 1093 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 PXYLP1Q8TE99 480 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 BRF1Q92994 677 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 ZKSCAN3Q9BRR0 538 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 TEX13BQ9BXU2 312 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 R3HDMLQ9H3Y0 253 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 PFASO15067 1338 aa8.16□□□□□ -1.1
LIMA1-202ENST00000394943 GPR25O00155 361 aa8.15□□□□□ -1.1
LIMA1-202ENST00000394943 STXBP3O00186 592 aa8.15□□□□□ -1.1
LIMA1-202ENST00000394943 LARGE1O95461 756 aa8.15□□□□□ -1.1
LIMA1-202ENST00000394943 PTPREP23469 700 aa8.15□□□□□ -1.1
LIMA1-202ENST00000394943 APOBRQ0VD83 1088 aa8.15□□□□□ -1.1
LIMA1-202ENST00000394943 PRKG1Q13976 671 aa8.15□□□□□ -1.1
LIMA1-202ENST00000394943 RTN1Q16799 776 aa8.15□□□□□ -1.1
LIMA1-202ENST00000394943 MAP3K21Q5TCX8 1036 aa8.15□□□□□ -1.1
LIMA1-202ENST00000394943 TTBK2Q6IQ55 1244 aa8.15□□□□□ -1.1
LIMA1-202ENST00000394943 GPRC5AQ8NFJ5 357 aa8.15□□□□□ -1.1
LIMA1-202ENST00000394943 ATG4CQ96DT6 458 aa8.15□□□□□ -1.1
LIMA1-202ENST00000394943 MYH7BA7E2Y1 1941 aa8.15□□□□□ -1.1
LIMA1-202ENST00000394943 CPA1P15085 419 aa8.15□□□□□ -1.1
LIMA1-202ENST00000394943 PKN2Q16513 984 aaKnown RBP8.15□□□□□ -1.1
LIMA1-202ENST00000394943 Q3C1V9 767 aa8.15□□□□□ -1.1
LIMA1-202ENST00000394943 XRRA1Q6P2D8 792 aa8.15□□□□□ -1.1
LIMA1-202ENST00000394943 FAM133AQ8N9E0 248 aa8.15□□□□□ -1.1
LIMA1-202ENST00000394943 MOV10L1Q9BXT6 1211 aaKnown RBP8.15□□□□□ -1.1
LIMA1-202ENST00000394943 SYNGAP1Q96PV0 1343 aa8.15□□□□□ -1.1
LIMA1-202ENST00000394943 WDR81Q562E7 1941 aa8.15□□□□□ -1.11
LIMA1-202ENST00000394943 TMEM232C9JQI7 657 aa8.15□□□□□ -1.11
LIMA1-202ENST00000394943 PLEKHA8P1O95397 391 aa8.15□□□□□ -1.11
LIMA1-202ENST00000394943 METAP2P50579 478 aaKnown RBP eCLIP8.15□□□□□ -1.11
LIMA1-202ENST00000394943 RRP12Q5JTH9 1297 aaKnown RBP8.15□□□□□ -1.11
LIMA1-202ENST00000394943 GADL1Q6ZQY3 521 aa8.15□□□□□ -1.11
LIMA1-202ENST00000394943 RASGRP2Q7LDG7 609 aa8.15□□□□□ -1.11
LIMA1-202ENST00000394943 DNERQ8NFT8 737 aa8.15□□□□□ -1.11
LIMA1-202ENST00000394943 SOCS4Q8WXH5 440 aa8.15□□□□□ -1.11
LIMA1-202ENST00000394943 ERO1AQ96HE7 468 aa8.15□□□□□ -1.11
LIMA1-202ENST00000394943 PHF20Q9BVI0 1012 aa8.15□□□□□ -1.11
LIMA1-202ENST00000394943 STX8Q9UNK0 236 aa8.15□□□□□ -1.11
LIMA1-202ENST00000394943 ST18O60284 1047 aa8.14□□□□□ -1.11
LIMA1-202ENST00000394943 ZBED4O75132 1171 aa8.14□□□□□ -1.11
LIMA1-202ENST00000394943 CDKL5O76039 1030 aa8.14□□□□□ -1.11
LIMA1-202ENST00000394943 CYP3A4P08684 503 aa8.14□□□□□ -1.11
LIMA1-202ENST00000394943 CTCFLQ8NI51 663 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-202ENST00000394943 RIC8AQ9NPQ8 531 aa8.14□□□□□ -1.11
LIMA1-202ENST00000394943 DHX16O60231 1041 aaKnown RBP8.14□□□□□ -1.11
LIMA1-202ENST00000394943 DEXIO95424 95 aa8.14□□□□□ -1.11
LIMA1-202ENST00000394943 ORC2Q13416 577 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-202ENST00000394943 CDC37Q16543 378 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-202ENST00000394943 QRICH1Q2TAL8 776 aa8.14□□□□□ -1.11
LIMA1-202ENST00000394943 MOXD1Q6UVY6 613 aa8.14□□□□□ -1.11
LIMA1-202ENST00000394943 CHST3Q7LGC8 479 aa8.14□□□□□ -1.11
LIMA1-202ENST00000394943 ASTN1O14525 1302 aa8.14□□□□□ -1.11
LIMA1-202ENST00000394943 EDIL3O43854 480 aa8.14□□□□□ -1.11
LIMA1-202ENST00000394943 NIPA1Q7RTP0 329 aa8.14□□□□□ -1.11
LIMA1-202ENST00000394943 NUP88Q99567 741 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-202ENST00000394943 FBXO28Q9NVF7 368 aa8.14□□□□□ -1.11
LIMA1-202ENST00000394943 GOLGA8AA7E2F4 631 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 GOLGA8BA8MQT2 603 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 MEIS2O14770 477 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 FKTNO75072 461 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 STAM2O75886 525 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 CTCFP49711 727 aaPredicted RBP8.13□□□□□ -1.11
LIMA1-202ENST00000394943 NEK4P51957 841 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 CCNA1P78396 465 aa8.13□□□□□ -1.11
LIMA1-202ENST00000394943 HMGN5P82970 282 aaKnown RBP8.13□□□□□ -1.11
LIMA1-202ENST00000394943 TAF1CQ15572 869 aaPredicted RBP8.13□□□□□ -1.11
LIMA1-202ENST00000394943 KCTD1Q719H9 257 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms