RNA–Protein interactions for RNA: ENST00000394892.2

ATG4A-205, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 935 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-205ENST00000394892 SLC4A3P48751 1232 aa10.48□□□□□ -0.73
ATG4A-205ENST00000394892 ATN1P54259 1190 aaPredicted RBP10.48□□□□□ -0.73
ATG4A-205ENST00000394892 KCTD2Q14681 263 aa10.48□□□□□ -0.73
ATG4A-205ENST00000394892 LRRC41Q15345 812 aa10.48□□□□□ -0.73
ATG4A-205ENST00000394892 MUM1L1Q5H9M0 696 aa10.48□□□□□ -0.73
ATG4A-205ENST00000394892 RRP12Q5JTH9 1297 aaKnown RBP10.48□□□□□ -0.73
ATG4A-205ENST00000394892 AKNAD1Q5T1N1 836 aa10.48□□□□□ -0.73
ATG4A-205ENST00000394892 MAMDC4Q6UXC1 1216 aa10.48□□□□□ -0.73
ATG4A-205ENST00000394892 PURBQ96QR8 312 aaKnown RBP10.48□□□□□ -0.73
ATG4A-205ENST00000394892 SENP6Q9GZR1 1112 aaPredicted RBP10.48□□□□□ -0.73
ATG4A-205ENST00000394892 PRR12Q9ULL5 1215 aa10.48□□□□□ -0.73
ATG4A-205ENST00000394892 MTMR7Q9Y216 660 aa10.48□□□□□ -0.73
ATG4A-205ENST00000394892 TAF6LQ9Y6J9 622 aa10.48□□□□□ -0.73
ATG4A-205ENST00000394892 MYADML2A6NDP7 307 aa10.47□□□□□ -0.73
ATG4A-205ENST00000394892 DNM1LO00429 736 aa10.47□□□□□ -0.73
ATG4A-205ENST00000394892 ADAMTS4O75173 837 aa10.47□□□□□ -0.73
ATG4A-205ENST00000394892 PGK1P00558 417 aa10.47□□□□□ -0.73
ATG4A-205ENST00000394892 SNHG28P0DPA3 235 aa10.47□□□□□ -0.73
ATG4A-205ENST00000394892 STAT2P52630 851 aa10.47□□□□□ -0.73
ATG4A-205ENST00000394892 OAZ1P54368 228 aa10.47□□□□□ -0.73
ATG4A-205ENST00000394892 MDM2Q00987 491 aaPredicted RBP10.47□□□□□ -0.73
ATG4A-205ENST00000394892 TMEM63BQ5T3F8 832 aa10.47□□□□□ -0.73
ATG4A-205ENST00000394892 TTC22Q5TAA0 569 aa10.47□□□□□ -0.73
ATG4A-205ENST00000394892 BTNL9Q6UXG8 535 aa10.47□□□□□ -0.73
ATG4A-205ENST00000394892 SKAP1Q86WV1 359 aa10.47□□□□□ -0.73
ATG4A-205ENST00000394892 FAM133AQ8N9E0 248 aa10.47□□□□□ -0.73
ATG4A-205ENST00000394892 ZKSCAN3Q9BRR0 538 aa10.47□□□□□ -0.73
ATG4A-205ENST00000394892 A1CFQ9NQ94 594 aaKnown RBP10.47□□□□□ -0.73
ATG4A-205ENST00000394892 HOMER2Q9NSB8 354 aa10.47□□□□□ -0.73
ATG4A-205ENST00000394892 CTAGE5O15320 804 aa10.46□□□□□ -0.73
ATG4A-205ENST00000394892 PDHBP11177 359 aa10.46□□□□□ -0.73
ATG4A-205ENST00000394892 TOP1P11387 765 aaKnown RBP10.46□□□□□ -0.73
ATG4A-205ENST00000394892 COPB2P35606 906 aa10.46□□□□□ -0.73
ATG4A-205ENST00000394892 ADCYAP1R1P41586 468 aa10.46□□□□□ -0.73
ATG4A-205ENST00000394892 PTH1RQ03431 593 aa10.46□□□□□ -0.73
ATG4A-205ENST00000394892 SNX17Q15036 470 aa10.46□□□□□ -0.73
ATG4A-205ENST00000394892 FAM109BQ6ICB4 259 aaPredicted RBP10.46□□□□□ -0.73
ATG4A-205ENST00000394892 CCSAPQ6IQ19 270 aaPredicted RBP10.46□□□□□ -0.73
ATG4A-205ENST00000394892 CCDC174Q6PII3 467 aa10.46□□□□□ -0.73
ATG4A-205ENST00000394892 FAM160B2Q86V87 743 aa10.46□□□□□ -0.73
ATG4A-205ENST00000394892 CHST13Q8NET6 341 aa10.46□□□□□ -0.73
ATG4A-205ENST00000394892 CHURC1Q8WUH1 139 aa10.46□□□□□ -0.73
ATG4A-205ENST00000394892 FERMT2Q96AC1 680 aa10.46□□□□□ -0.73
ATG4A-205ENST00000394892 RANBP17Q9H2T7 1088 aaKnown RBP10.46□□□□□ -0.73
ATG4A-205ENST00000394892 CPVLQ9H3G5 476 aa10.46□□□□□ -0.73
ATG4A-205ENST00000394892 GPCPD1Q9NPB8 672 aa10.46□□□□□ -0.73
ATG4A-205ENST00000394892 TOMM22Q9NS69 142 aa10.46□□□□□ -0.73
ATG4A-205ENST00000394892 RNF146Q9NTX7 359 aa10.46□□□□□ -0.73
ATG4A-205ENST00000394892 SLC5A4Q9NY91 659 aa10.46□□□□□ -0.73
ATG4A-205ENST00000394892 NRBP1Q9UHY1 535 aa10.46□□□□□ -0.73
ATG4A-205ENST00000394892 FRMPD2Q68DX3 1309 aaPredicted RBP10.46□□□□□ -0.73
ATG4A-205ENST00000394892 DNAH12Q6ZR08 3092 aa10.46□□□□□ -0.74
ATG4A-205ENST00000394892 SYNGAP1Q96PV0 1343 aa10.45□□□□□ -0.74
ATG4A-205ENST00000394892 ITGB8P26012 769 aa10.45□□□□□ -0.74
ATG4A-205ENST00000394892 CHMLP26374 656 aa10.45□□□□□ -0.74
ATG4A-205ENST00000394892 RTP1P59025 263 aa10.45□□□□□ -0.74
ATG4A-205ENST00000394892 COL9A3Q14050 684 aaPredicted RBP10.45□□□□□ -0.74
ATG4A-205ENST00000394892 ZNF697Q5TEC3 545 aa10.45□□□□□ -0.74
ATG4A-205ENST00000394892 SLC39A5Q6ZMH5 540 aa10.45□□□□□ -0.74
ATG4A-205ENST00000394892 MFSD6Q6ZSS7 791 aa10.45□□□□□ -0.74
ATG4A-205ENST00000394892 SH3RF1Q7Z6J0 888 aa10.45□□□□□ -0.74
ATG4A-205ENST00000394892 ZNF467Q7Z7K2 595 aaPredicted RBP10.45□□□□□ -0.74
ATG4A-205ENST00000394892 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.45□□□□□ -0.74
ATG4A-205ENST00000394892 ARRDC4Q8NCT1 418 aa10.45□□□□□ -0.74
ATG4A-205ENST00000394892 KLHDC9Q8NEP7 349 aa10.45□□□□□ -0.74
ATG4A-205ENST00000394892 DCAF4Q8WV16 495 aa10.45□□□□□ -0.74
ATG4A-205ENST00000394892 CLEC4DQ8WXI8 215 aa10.45□□□□□ -0.74
ATG4A-205ENST00000394892 ANKS1AQ92625 1134 aa10.45□□□□□ -0.74
ATG4A-205ENST00000394892 DDX11Q96FC9 970 aa10.45□□□□□ -0.74
ATG4A-205ENST00000394892 TRERF1Q96PN7 1200 aa10.45□□□□□ -0.74
ATG4A-205ENST00000394892 DSCC1Q9BVC3 393 aa10.45□□□□□ -0.74
ATG4A-205ENST00000394892 XPNPEP3Q9NQH7 507 aa10.45□□□□□ -0.74
ATG4A-205ENST00000394892 DIAPH3Q9NSV4 1193 aa10.45□□□□□ -0.74
ATG4A-205ENST00000394892 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.45□□□□□ -0.74
ATG4A-205ENST00000394892 PHF24Q9UPV7 400 aa10.45□□□□□ -0.74
ATG4A-205ENST00000394892 COL11A1P12107 1806 aaPredicted RBP10.44□□□□□ -0.74
ATG4A-205ENST00000394892 SYNRGQ9UMZ2 1314 aa10.44□□□□□ -0.74
ATG4A-205ENST00000394892 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.44□□□□□ -0.74
ATG4A-205ENST00000394892 TRIM43BA6NCK2 446 aa10.44□□□□□ -0.74
ATG4A-205ENST00000394892 B4E1Z4 1266 aa10.44□□□□□ -0.74
ATG4A-205ENST00000394892 NFIBO00712 420 aa10.44□□□□□ -0.74
ATG4A-205ENST00000394892 KDM4AO75164 1064 aa10.44□□□□□ -0.74
ATG4A-205ENST00000394892 GOLGA8HP0CJ92 632 aa10.44□□□□□ -0.74
ATG4A-205ENST00000394892 FDX1P10109 184 aa10.44□□□□□ -0.74
ATG4A-205ENST00000394892 ALAS1P13196 640 aa10.44□□□□□ -0.74
ATG4A-205ENST00000394892 ZNF543Q08ER8 600 aa10.44□□□□□ -0.74
ATG4A-205ENST00000394892 ACVR2BQ13705 512 aa10.44□□□□□ -0.74
ATG4A-205ENST00000394892 CCDC96Q2M329 555 aa10.44□□□□□ -0.74
ATG4A-205ENST00000394892 SLC35G1Q2M3R5 365 aa10.44□□□□□ -0.74
ATG4A-205ENST00000394892 TRIM60Q495X7 471 aa10.44□□□□□ -0.74
ATG4A-205ENST00000394892 SYDE2Q5VT97 1194 aa10.44□□□□□ -0.74
ATG4A-205ENST00000394892 ARMCX2Q7L311 632 aa10.44□□□□□ -0.74
ATG4A-205ENST00000394892 CCDC144CPQ8IYA2 1237 aa10.44□□□□□ -0.74
ATG4A-205ENST00000394892 ANKRD35Q8N283 1001 aa10.44□□□□□ -0.74
ATG4A-205ENST00000394892 MSL3Q8N5Y2 521 aaKnown RBP10.44□□□□□ -0.74
ATG4A-205ENST00000394892 TRIM43Q96BQ3 446 aaPredicted RBP10.44□□□□□ -0.74
ATG4A-205ENST00000394892 ACAD9Q9H845 621 aa10.44□□□□□ -0.74
ATG4A-205ENST00000394892 CYP39A1Q9NYL5 469 aa10.44□□□□□ -0.74
ATG4A-205ENST00000394892 ZSWIM5Q9P217 1185 aa10.44□□□□□ -0.74
ATG4A-205ENST00000394892 FBXO40Q9UH90 709 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms