RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 KIF22Q14807 665 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 NRBF2Q96F24 287 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 EEF2KMTQ96G04 330 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 ERBB4Q15303 1308 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 PRDM1O75626 825 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 DPCR1Q3MIW9 517 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 ZNF711Q9Y462 761 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 PPME1Q9Y570 386 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 HMGB1P1B2RPK0 211 aaPredicted RBP12.94□□□□□ -0.34
SYNPO-202ENST00000394243 ZNF804AQ7Z570 1209 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 NME8Q8N427 588 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 RNF123Q5XPI4 1314 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 RAPGEF3O95398 923 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 PLCG2P16885 1265 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 CASP2P42575 452 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 KRT81Q14533 505 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 SEPT2Q15019 361 aa12.94□□□□□ -0.34
SYNPO-202ENST00000394243 CAPRIN2Q6IMN6 1127 aaKnown RBP12.94□□□□□ -0.34
SYNPO-202ENST00000394243 B4DLN1 442 aa12.93□□□□□ -0.34
SYNPO-202ENST00000394243 GPC4O75487 556 aa12.93□□□□□ -0.34
SYNPO-202ENST00000394243 RPN1P04843 607 aaKnown RBP12.93□□□□□ -0.34
SYNPO-202ENST00000394243 YWHAGP61981 247 aaKnown RBP eCLIP12.93□□□□□ -0.34
SYNPO-202ENST00000394243 NBPF9Q3BBW0 867 aa12.93□□□□□ -0.34
SYNPO-202ENST00000394243 NOSTRINQ8IVI9 506 aa12.93□□□□□ -0.34
SYNPO-202ENST00000394243 DCLK2Q8N568 766 aa12.93□□□□□ -0.34
SYNPO-202ENST00000394243 EFHD1Q9BUP0 239 aa12.93□□□□□ -0.34
SYNPO-202ENST00000394243 PALMDQ9NP74 551 aa12.93□□□□□ -0.34
SYNPO-202ENST00000394243 MAD1L1Q9Y6D9 718 aa12.93□□□□□ -0.34
SYNPO-202ENST00000394243 ARHGEF11O15085 1522 aa12.93□□□□□ -0.34
SYNPO-202ENST00000394243 GNGT2O14610 69 aa12.93□□□□□ -0.34
SYNPO-202ENST00000394243 MAPK13O15264 365 aa12.93□□□□□ -0.34
SYNPO-202ENST00000394243 CYP2J2P51589 502 aa12.93□□□□□ -0.34
SYNPO-202ENST00000394243 BFSP1Q12934 665 aa12.93□□□□□ -0.34
SYNPO-202ENST00000394243 OTUD6AQ7L8S5 288 aa12.93□□□□□ -0.34
SYNPO-202ENST00000394243 PRPF31Q8WWY3 499 aaKnown RBP12.93□□□□□ -0.34
SYNPO-202ENST00000394243 ESYT2A0FGR8 921 aa12.93□□□□□ -0.34
SYNPO-202ENST00000394243 WDR91A4D1P6 747 aa12.93□□□□□ -0.34
SYNPO-202ENST00000394243 DDX39AO00148 427 aaKnown RBP12.93□□□□□ -0.34
SYNPO-202ENST00000394243 PIK3C2GO75747 1445 aa12.93□□□□□ -0.34
SYNPO-202ENST00000394243 LMNAP02545 664 aaKnown RBP12.93□□□□□ -0.34
SYNPO-202ENST00000394243 LDHBP07195 334 aaKnown RBP12.93□□□□□ -0.34
SYNPO-202ENST00000394243 AKAP4Q5JQC9 854 aa12.93□□□□□ -0.34
SYNPO-202ENST00000394243 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.93□□□□□ -0.34
SYNPO-202ENST00000394243 SNX1Q13596 522 aa12.93□□□□□ -0.34
SYNPO-202ENST00000394243 CYP4F22Q6NT55 531 aa12.93□□□□□ -0.34
SYNPO-202ENST00000394243 KBTBD3Q8NAB2 608 aa12.93□□□□□ -0.34
SYNPO-202ENST00000394243 C14orf93Q9H972 538 aaKnown RBP12.93□□□□□ -0.34
SYNPO-202ENST00000394243 IBTKQ9P2D0 1353 aaPredicted RBP12.93□□□□□ -0.34
SYNPO-202ENST00000394243 MOCS3O95396 460 aa12.92□□□□□ -0.34
SYNPO-202ENST00000394243 EIF6P56537 245 aaKnown RBP12.92□□□□□ -0.34
SYNPO-202ENST00000394243 SEPT8Q92599 483 aa12.92□□□□□ -0.34
SYNPO-202ENST00000394243 NCAPGQ9BPX3 1015 aa12.92□□□□□ -0.34
SYNPO-202ENST00000394243 MAN1A2O60476 641 aa12.92□□□□□ -0.34
SYNPO-202ENST00000394243 PTH1RQ03431 593 aa12.92□□□□□ -0.34
SYNPO-202ENST00000394243 PACSIN2Q9UNF0 486 aaPredicted RBP12.92□□□□□ -0.34
SYNPO-202ENST00000394243 ORC6Q9Y5N6 252 aa12.92□□□□□ -0.34
SYNPO-202ENST00000394243 EXOC5O00471 708 aa12.92□□□□□ -0.34
SYNPO-202ENST00000394243 IRS4O14654 1257 aaPredicted RBP12.92□□□□□ -0.34
SYNPO-202ENST00000394243 HDLBPQ00341 1268 aaKnown RBP12.92□□□□□ -0.34
SYNPO-202ENST00000394243 NUGGCQ68CJ6 796 aa12.92□□□□□ -0.34
SYNPO-202ENST00000394243 HDAC11Q96DB2 347 aa12.92□□□□□ -0.34
SYNPO-202ENST00000394243 ZNF274Q96GC6 653 aaPredicted RBP12.92□□□□□ -0.34
SYNPO-202ENST00000394243 CCDC68Q9H2F9 335 aa12.92□□□□□ -0.34
SYNPO-202ENST00000394243 STK24Q9Y6E0 443 aa12.92□□□□□ -0.34
SYNPO-202ENST00000394243 PARP9Q8IXQ6 854 aa12.92□□□□□ -0.34
SYNPO-202ENST00000394243 OSCARQ8IYS5 282 aa12.92□□□□□ -0.34
SYNPO-202ENST00000394243 CMTR1Q8N1G2 835 aaKnown RBP12.92□□□□□ -0.34
SYNPO-202ENST00000394243 ZCCHC17Q9NP64 241 aaKnown RBP12.92□□□□□ -0.34
SYNPO-202ENST00000394243 SCHIP1Q9P0W5 487 aaPredicted RBP12.92□□□□□ -0.34
SYNPO-202ENST00000394243 ARMCX3Q9UH62 379 aaPredicted RBP12.92□□□□□ -0.34
SYNPO-202ENST00000394243 RGS12O14924 1447 aa12.92□□□□□ -0.34
SYNPO-202ENST00000394243 ADCY7P51828 1080 aa12.92□□□□□ -0.34
SYNPO-202ENST00000394243 MESDQ14696 234 aa12.92□□□□□ -0.34
SYNPO-202ENST00000394243 TRIM42Q8IWZ5 723 aa12.92□□□□□ -0.34
SYNPO-202ENST00000394243 ZSWIM6Q9HCJ5 1215 aa12.92□□□□□ -0.34
SYNPO-202ENST00000394243 LMNB2Q03252 620 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 THOC1Q96FV9 657 aaKnown RBP12.91□□□□□ -0.34
SYNPO-202ENST00000394243 NLRP3Q96P20 1036 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 KRT19P08727 400 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 GARSP41250 739 aaKnown RBP12.91□□□□□ -0.34
SYNPO-202ENST00000394243 TMEM259Q4ZIN3 620 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 HIPK4Q8NE63 616 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 CEP19Q96LK0 163 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 TUBGCP2Q9BSJ2 902 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 SLC39A2Q9NP94 309 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 SMYD2Q9NRG4 433 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 KRT82Q9NSB4 513 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 PCDHA5Q9Y5H7 936 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 GOLGA8QA0A0J9YX86 632 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 GOLGA8OA6NCC3 632 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 GOLGA8NF8WBI6 632 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 GTPBP6O43824 516 aaPredicted RBP12.91□□□□□ -0.34
SYNPO-202ENST00000394243 CHGBP05060 677 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 TNNI1P19237 187 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 KMT5BQ4FZB7 885 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 SCYL2Q6P3W7 929 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 TRMT10CQ7L0Y3 403 aaKnown RBP12.91□□□□□ -0.34
SYNPO-202ENST00000394243 USP6NLQ92738 828 aa12.91□□□□□ -0.34
SYNPO-202ENST00000394243 CNOT6LQ96LI5 555 aaKnown RBP12.91□□□□□ -0.34
SYNPO-202ENST00000394243 NIP7Q9Y221 180 aaKnown RBP eCLIP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms